Experiment: Galactan from Potato 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS11975 and HMPREF1058_RS11970 are separated by 12 nucleotides HMPREF1058_RS11970 and HMPREF1058_RS11965 are separated by 56 nucleotides HMPREF1058_RS11965 and HMPREF1058_RS20655 are separated by 334 nucleotides HMPREF1058_RS20655 and HMPREF1058_RS11960 are separated by 113 nucleotides HMPREF1058_RS11960 and HMPREF1058_RS11955 are separated by 155 nucleotides
HMPREF1058_RS11975: HMPREF1058_RS11975 - outer membrane beta-barrel protein, at 233,476 to 234,123
_RS11975
HMPREF1058_RS11970: HMPREF1058_RS11970 - hypothetical protein, at 234,136 to 234,633
_RS11970
HMPREF1058_RS11965: HMPREF1058_RS11965 - glycoside hydrolase family 88 protein, at 234,690 to 235,988
_RS11965
HMPREF1058_RS20655: HMPREF1058_RS20655 - hypothetical protein, at 236,323 to 236,525
_RS20655
HMPREF1058_RS11960: HMPREF1058_RS11960 - tRNA-Ile, at 236,639 to 236,712
_RS11960
HMPREF1058_RS11955: HMPREF1058_RS11955 - calcium-translocating P-type ATPase, PMCA-type, at 236,868 to 239,498
_RS11955
Position (kb) 234
235
236 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 233.719 kb on + strand, within HMPREF1058_RS11975 at 233.858 kb on + strand, within HMPREF1058_RS11975 at 233.858 kb on + strand, within HMPREF1058_RS11975 at 233.862 kb on + strand, within HMPREF1058_RS11975 at 233.862 kb on + strand, within HMPREF1058_RS11975 at 233.880 kb on - strand, within HMPREF1058_RS11975 at 233.881 kb on + strand, within HMPREF1058_RS11975 at 233.882 kb on - strand, within HMPREF1058_RS11975 at 233.986 kb on + strand, within HMPREF1058_RS11975 at 233.986 kb on + strand, within HMPREF1058_RS11975 at 233.986 kb on + strand, within HMPREF1058_RS11975 at 233.989 kb on - strand, within HMPREF1058_RS11975 at 233.998 kb on + strand, within HMPREF1058_RS11975 at 234.010 kb on + strand, within HMPREF1058_RS11975 at 234.011 kb on - strand, within HMPREF1058_RS11975 at 234.044 kb on + strand, within HMPREF1058_RS11975 at 234.045 kb on - strand, within HMPREF1058_RS11975 at 234.109 kb on - strand at 234.109 kb on - strand at 234.142 kb on - strand at 234.145 kb on + strand at 234.151 kb on - strand at 234.153 kb on + strand at 234.281 kb on + strand, within HMPREF1058_RS11970 at 234.283 kb on + strand, within HMPREF1058_RS11970 at 234.283 kb on + strand, within HMPREF1058_RS11970 at 234.335 kb on - strand, within HMPREF1058_RS11970 at 234.366 kb on - strand, within HMPREF1058_RS11970 at 234.366 kb on - strand, within HMPREF1058_RS11970 at 234.367 kb on + strand, within HMPREF1058_RS11970 at 234.387 kb on + strand at 234.429 kb on + strand, within HMPREF1058_RS11970 at 234.440 kb on - strand, within HMPREF1058_RS11970 at 234.474 kb on + strand, within HMPREF1058_RS11970 at 234.475 kb on - strand, within HMPREF1058_RS11970 at 234.491 kb on + strand, within HMPREF1058_RS11970 at 234.507 kb on + strand, within HMPREF1058_RS11970 at 234.508 kb on - strand, within HMPREF1058_RS11970 at 234.544 kb on - strand, within HMPREF1058_RS11970 at 234.632 kb on - strand at 234.632 kb on - strand at 234.636 kb on + strand at 234.637 kb on - strand at 234.637 kb on - strand at 234.637 kb on - strand at 234.733 kb on + strand at 234.768 kb on + strand at 234.816 kb on - strand at 234.821 kb on - strand, within HMPREF1058_RS11965 at 234.842 kb on + strand, within HMPREF1058_RS11965 at 234.842 kb on + strand, within HMPREF1058_RS11965 at 234.843 kb on - strand, within HMPREF1058_RS11965 at 234.843 kb on - strand, within HMPREF1058_RS11965 at 234.921 kb on + strand, within HMPREF1058_RS11965 at 234.921 kb on + strand, within HMPREF1058_RS11965 at 234.922 kb on - strand, within HMPREF1058_RS11965 at 234.978 kb on + strand, within HMPREF1058_RS11965 at 234.986 kb on + strand, within HMPREF1058_RS11965 at 234.992 kb on + strand, within HMPREF1058_RS11965 at 234.999 kb on - strand, within HMPREF1058_RS11965 at 235.076 kb on + strand, within HMPREF1058_RS11965 at 235.118 kb on + strand, within HMPREF1058_RS11965 at 235.208 kb on + strand, within HMPREF1058_RS11965 at 235.223 kb on - strand, within HMPREF1058_RS11965 at 235.234 kb on + strand, within HMPREF1058_RS11965 at 235.268 kb on + strand, within HMPREF1058_RS11965 at 235.270 kb on + strand, within HMPREF1058_RS11965 at 235.320 kb on - strand, within HMPREF1058_RS11965 at 235.464 kb on - strand, within HMPREF1058_RS11965 at 235.555 kb on + strand, within HMPREF1058_RS11965 at 235.563 kb on - strand, within HMPREF1058_RS11965 at 235.613 kb on + strand, within HMPREF1058_RS11965 at 235.618 kb on + strand, within HMPREF1058_RS11965 at 235.619 kb on - strand, within HMPREF1058_RS11965 at 235.634 kb on - strand, within HMPREF1058_RS11965 at 235.681 kb on + strand, within HMPREF1058_RS11965 at 235.733 kb on + strand, within HMPREF1058_RS11965 at 235.768 kb on + strand, within HMPREF1058_RS11965 at 235.830 kb on - strand, within HMPREF1058_RS11965 at 235.840 kb on - strand, within HMPREF1058_RS11965 at 235.863 kb on - strand at 235.892 kb on + strand at 235.988 kb on + strand at 235.989 kb on - strand at 235.989 kb on - strand at 235.989 kb on - strand at 236.017 kb on + strand at 236.065 kb on + strand at 236.065 kb on + strand at 236.082 kb on - strand at 236.160 kb on + strand at 236.161 kb on - strand at 236.231 kb on + strand at 236.260 kb on + strand at 236.270 kb on + strand at 236.295 kb on + strand at 236.299 kb on - strand at 236.539 kb on - strand at 236.539 kb on - strand at 236.541 kb on - strand at 236.541 kb on - strand at 236.542 kb on + strand at 236.542 kb on + strand at 236.542 kb on + strand at 236.575 kb on + strand at 236.575 kb on + strand at 236.576 kb on - strand at 236.576 kb on - strand at 236.576 kb on - strand at 236.578 kb on - strand at 236.578 kb on - strand at 236.824 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Galactan from Potato 2.5 mg/ml (C) remove 233,719 + HMPREF1058_RS11975 0.38 +0.6 233,858 + HMPREF1058_RS11975 0.59 +1.4 233,858 + HMPREF1058_RS11975 0.59 -2.6 233,862 + HMPREF1058_RS11975 0.60 -1.4 233,862 + HMPREF1058_RS11975 0.60 -0.8 233,880 - HMPREF1058_RS11975 0.62 -0.7 233,881 + HMPREF1058_RS11975 0.62 -0.4 233,882 - HMPREF1058_RS11975 0.63 -0.4 233,986 + HMPREF1058_RS11975 0.79 -0.9 233,986 + HMPREF1058_RS11975 0.79 -0.2 233,986 + HMPREF1058_RS11975 0.79 -1.4 233,989 - HMPREF1058_RS11975 0.79 +0.8 233,998 + HMPREF1058_RS11975 0.81 +0.5 234,010 + HMPREF1058_RS11975 0.82 -1.1 234,011 - HMPREF1058_RS11975 0.83 -0.7 234,044 + HMPREF1058_RS11975 0.88 -1.7 234,045 - HMPREF1058_RS11975 0.88 +1.1 234,109 - -0.6 234,109 - -2.9 234,142 - -0.1 234,145 + -0.4 234,151 - +0.2 234,153 + -1.1 234,281 + HMPREF1058_RS11970 0.29 -0.1 234,283 + HMPREF1058_RS11970 0.30 -0.1 234,283 + HMPREF1058_RS11970 0.30 -0.8 234,335 - HMPREF1058_RS11970 0.40 -0.4 234,366 - HMPREF1058_RS11970 0.46 -3.3 234,366 - HMPREF1058_RS11970 0.46 +0.6 234,367 + HMPREF1058_RS11970 0.46 -0.5 234,387 + -1.2 234,429 + HMPREF1058_RS11970 0.59 -0.5 234,440 - HMPREF1058_RS11970 0.61 +0.0 234,474 + HMPREF1058_RS11970 0.68 -0.4 234,475 - HMPREF1058_RS11970 0.68 -0.0 234,491 + HMPREF1058_RS11970 0.71 -0.6 234,507 + HMPREF1058_RS11970 0.74 -0.3 234,508 - HMPREF1058_RS11970 0.75 +0.2 234,544 - HMPREF1058_RS11970 0.82 -0.8 234,632 - -1.2 234,632 - -0.3 234,636 + -0.1 234,637 - -1.6 234,637 - +1.2 234,637 - +0.3 234,733 + +0.3 234,768 + -1.0 234,816 - +0.6 234,821 - HMPREF1058_RS11965 0.10 -0.3 234,842 + HMPREF1058_RS11965 0.12 +0.5 234,842 + HMPREF1058_RS11965 0.12 +1.5 234,843 - HMPREF1058_RS11965 0.12 +0.4 234,843 - HMPREF1058_RS11965 0.12 -0.8 234,921 + HMPREF1058_RS11965 0.18 -0.2 234,921 + HMPREF1058_RS11965 0.18 -0.2 234,922 - HMPREF1058_RS11965 0.18 +0.0 234,978 + HMPREF1058_RS11965 0.22 -0.0 234,986 + HMPREF1058_RS11965 0.23 -0.5 234,992 + HMPREF1058_RS11965 0.23 -0.6 234,999 - HMPREF1058_RS11965 0.24 +0.5 235,076 + HMPREF1058_RS11965 0.30 -1.3 235,118 + HMPREF1058_RS11965 0.33 -0.2 235,208 + HMPREF1058_RS11965 0.40 -0.4 235,223 - HMPREF1058_RS11965 0.41 -1.9 235,234 + HMPREF1058_RS11965 0.42 -0.1 235,268 + HMPREF1058_RS11965 0.44 -1.4 235,270 + HMPREF1058_RS11965 0.45 -0.9 235,320 - HMPREF1058_RS11965 0.48 -0.6 235,464 - HMPREF1058_RS11965 0.60 +1.2 235,555 + HMPREF1058_RS11965 0.67 -0.2 235,563 - HMPREF1058_RS11965 0.67 -0.3 235,613 + HMPREF1058_RS11965 0.71 -1.6 235,618 + HMPREF1058_RS11965 0.71 -1.5 235,619 - HMPREF1058_RS11965 0.72 +0.1 235,634 - HMPREF1058_RS11965 0.73 +0.2 235,681 + HMPREF1058_RS11965 0.76 +1.7 235,733 + HMPREF1058_RS11965 0.80 +0.3 235,768 + HMPREF1058_RS11965 0.83 +0.7 235,830 - HMPREF1058_RS11965 0.88 -0.2 235,840 - HMPREF1058_RS11965 0.89 -0.2 235,863 - -0.9 235,892 + -0.6 235,988 + -0.5 235,989 - +0.8 235,989 - -0.4 235,989 - -0.7 236,017 + -2.3 236,065 + -0.9 236,065 + -0.8 236,082 - -1.1 236,160 + -1.9 236,161 - -1.2 236,231 + +2.1 236,260 + -1.3 236,270 + -0.2 236,295 + -0.3 236,299 - -0.5 236,539 - -0.2 236,539 - -0.0 236,541 - -0.1 236,541 - -0.8 236,542 + -0.4 236,542 + -2.3 236,542 + +2.0 236,575 + -1.9 236,575 + +0.6 236,576 - -1.4 236,576 - -0.9 236,576 - -1.9 236,578 - -1.0 236,578 - +0.8 236,824 + -0.9
Or see this region's nucleotide sequence