Experiment: Galactan from Potato 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS11840 and HMPREF1058_RS11835 are separated by 75 nucleotides HMPREF1058_RS11835 and HMPREF1058_RS11830 are separated by 130 nucleotides HMPREF1058_RS11830 and HMPREF1058_RS11825 are separated by 48 nucleotides
HMPREF1058_RS11840: HMPREF1058_RS11840 - hypothetical protein, at 268,795 to 272,100
_RS11840
HMPREF1058_RS11835: HMPREF1058_RS11835 - hypothetical protein, at 272,176 to 272,523
_RS11835
HMPREF1058_RS11830: HMPREF1058_RS11830 - hypothetical protein, at 272,654 to 275,269
_RS11830
HMPREF1058_RS11825: HMPREF1058_RS11825 - helix-turn-helix transcriptional regulator, at 275,318 to 275,809
_RS11825
Position (kb) 272
273
274
275
276 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 271.721 kb on - strand, within HMPREF1058_RS11840 at 271.733 kb on + strand, within HMPREF1058_RS11840 at 271.733 kb on + strand, within HMPREF1058_RS11840 at 271.734 kb on - strand, within HMPREF1058_RS11840 at 271.736 kb on - strand, within HMPREF1058_RS11840 at 271.736 kb on - strand, within HMPREF1058_RS11840 at 271.742 kb on - strand, within HMPREF1058_RS11840 at 271.745 kb on - strand, within HMPREF1058_RS11840 at 271.755 kb on + strand, within HMPREF1058_RS11840 at 271.819 kb on + strand at 271.819 kb on + strand at 271.820 kb on - strand at 271.820 kb on - strand at 271.911 kb on + strand at 271.958 kb on - strand at 272.004 kb on + strand at 272.036 kb on + strand at 272.083 kb on - strand at 272.098 kb on + strand at 272.112 kb on - strand at 272.115 kb on + strand at 272.190 kb on - strand at 272.191 kb on + strand at 272.192 kb on - strand at 272.207 kb on - strand at 272.276 kb on + strand, within HMPREF1058_RS11835 at 272.326 kb on - strand, within HMPREF1058_RS11835 at 272.341 kb on - strand, within HMPREF1058_RS11835 at 272.351 kb on + strand, within HMPREF1058_RS11835 at 272.356 kb on + strand, within HMPREF1058_RS11835 at 272.357 kb on - strand, within HMPREF1058_RS11835 at 272.357 kb on - strand, within HMPREF1058_RS11835 at 272.395 kb on - strand, within HMPREF1058_RS11835 at 272.402 kb on - strand, within HMPREF1058_RS11835 at 272.434 kb on + strand, within HMPREF1058_RS11835 at 272.437 kb on + strand, within HMPREF1058_RS11835 at 272.483 kb on + strand, within HMPREF1058_RS11835 at 272.484 kb on - strand, within HMPREF1058_RS11835 at 272.487 kb on + strand, within HMPREF1058_RS11835 at 272.488 kb on - strand, within HMPREF1058_RS11835 at 272.513 kb on - strand at 272.546 kb on - strand at 272.555 kb on + strand at 272.555 kb on + strand at 272.574 kb on + strand at 272.655 kb on + strand at 272.655 kb on + strand at 272.706 kb on + strand at 272.706 kb on + strand at 272.707 kb on - strand at 272.711 kb on - strand at 272.740 kb on + strand at 272.743 kb on + strand at 272.743 kb on + strand at 272.761 kb on + strand at 272.810 kb on - strand at 272.819 kb on - strand at 272.868 kb on - strand at 272.880 kb on + strand at 272.881 kb on - strand at 272.884 kb on + strand at 272.884 kb on + strand at 272.884 kb on + strand at 272.884 kb on + strand at 272.885 kb on - strand at 272.886 kb on + strand at 272.887 kb on - strand at 272.887 kb on - strand at 272.887 kb on - strand at 272.887 kb on - strand at 272.921 kb on - strand, within HMPREF1058_RS11830 at 272.921 kb on - strand, within HMPREF1058_RS11830 at 272.938 kb on - strand, within HMPREF1058_RS11830 at 272.942 kb on - strand, within HMPREF1058_RS11830 at 273.007 kb on + strand, within HMPREF1058_RS11830 at 273.008 kb on - strand, within HMPREF1058_RS11830 at 273.067 kb on + strand, within HMPREF1058_RS11830 at 273.105 kb on + strand, within HMPREF1058_RS11830 at 273.105 kb on + strand, within HMPREF1058_RS11830 at 273.121 kb on - strand, within HMPREF1058_RS11830 at 273.125 kb on - strand, within HMPREF1058_RS11830 at 273.125 kb on - strand, within HMPREF1058_RS11830 at 273.166 kb on + strand, within HMPREF1058_RS11830 at 273.221 kb on + strand, within HMPREF1058_RS11830 at 273.223 kb on + strand, within HMPREF1058_RS11830 at 273.223 kb on + strand, within HMPREF1058_RS11830 at 273.239 kb on + strand, within HMPREF1058_RS11830 at 273.239 kb on + strand, within HMPREF1058_RS11830 at 273.239 kb on + strand, within HMPREF1058_RS11830 at 273.240 kb on - strand, within HMPREF1058_RS11830 at 273.241 kb on + strand, within HMPREF1058_RS11830 at 273.301 kb on + strand, within HMPREF1058_RS11830 at 273.302 kb on - strand, within HMPREF1058_RS11830 at 273.335 kb on + strand, within HMPREF1058_RS11830 at 273.336 kb on - strand, within HMPREF1058_RS11830 at 273.421 kb on + strand, within HMPREF1058_RS11830 at 273.422 kb on - strand, within HMPREF1058_RS11830 at 273.449 kb on - strand, within HMPREF1058_RS11830 at 273.452 kb on + strand, within HMPREF1058_RS11830 at 273.456 kb on + strand, within HMPREF1058_RS11830 at 273.457 kb on - strand, within HMPREF1058_RS11830 at 273.457 kb on - strand, within HMPREF1058_RS11830 at 273.457 kb on - strand, within HMPREF1058_RS11830 at 273.457 kb on - strand, within HMPREF1058_RS11830 at 273.491 kb on - strand, within HMPREF1058_RS11830 at 273.542 kb on - strand, within HMPREF1058_RS11830 at 273.544 kb on + strand, within HMPREF1058_RS11830 at 273.564 kb on - strand, within HMPREF1058_RS11830 at 273.666 kb on + strand, within HMPREF1058_RS11830 at 273.666 kb on + strand, within HMPREF1058_RS11830 at 273.670 kb on + strand, within HMPREF1058_RS11830 at 273.691 kb on + strand, within HMPREF1058_RS11830 at 273.827 kb on + strand, within HMPREF1058_RS11830 at 273.866 kb on - strand, within HMPREF1058_RS11830 at 273.878 kb on - strand, within HMPREF1058_RS11830 at 273.883 kb on + strand, within HMPREF1058_RS11830 at 273.884 kb on - strand, within HMPREF1058_RS11830 at 273.948 kb on + strand, within HMPREF1058_RS11830 at 273.948 kb on + strand, within HMPREF1058_RS11830 at 273.949 kb on - strand, within HMPREF1058_RS11830 at 273.949 kb on - strand, within HMPREF1058_RS11830 at 273.949 kb on - strand, within HMPREF1058_RS11830 at 273.954 kb on - strand, within HMPREF1058_RS11830 at 273.954 kb on - strand, within HMPREF1058_RS11830 at 273.986 kb on - strand, within HMPREF1058_RS11830 at 273.997 kb on + strand, within HMPREF1058_RS11830 at 274.038 kb on - strand, within HMPREF1058_RS11830 at 274.038 kb on - strand, within HMPREF1058_RS11830 at 274.046 kb on + strand, within HMPREF1058_RS11830 at 274.047 kb on - strand, within HMPREF1058_RS11830 at 274.050 kb on + strand, within HMPREF1058_RS11830 at 274.051 kb on - strand, within HMPREF1058_RS11830 at 274.054 kb on - strand, within HMPREF1058_RS11830 at 274.060 kb on - strand, within HMPREF1058_RS11830 at 274.094 kb on - strand, within HMPREF1058_RS11830 at 274.115 kb on + strand, within HMPREF1058_RS11830 at 274.125 kb on + strand, within HMPREF1058_RS11830 at 274.133 kb on - strand, within HMPREF1058_RS11830 at 274.149 kb on - strand, within HMPREF1058_RS11830 at 274.204 kb on + strand, within HMPREF1058_RS11830 at 274.205 kb on - strand at 274.257 kb on + strand, within HMPREF1058_RS11830 at 274.260 kb on - strand, within HMPREF1058_RS11830 at 274.282 kb on + strand, within HMPREF1058_RS11830 at 274.283 kb on - strand, within HMPREF1058_RS11830 at 274.283 kb on - strand, within HMPREF1058_RS11830 at 274.284 kb on + strand, within HMPREF1058_RS11830 at 274.284 kb on + strand, within HMPREF1058_RS11830 at 274.284 kb on + strand, within HMPREF1058_RS11830 at 274.285 kb on - strand, within HMPREF1058_RS11830 at 274.302 kb on + strand, within HMPREF1058_RS11830 at 274.303 kb on - strand, within HMPREF1058_RS11830 at 274.303 kb on - strand, within HMPREF1058_RS11830 at 274.303 kb on - strand, within HMPREF1058_RS11830 at 274.335 kb on + strand, within HMPREF1058_RS11830 at 274.336 kb on - strand, within HMPREF1058_RS11830 at 274.369 kb on + strand, within HMPREF1058_RS11830 at 274.369 kb on + strand, within HMPREF1058_RS11830 at 274.372 kb on - strand, within HMPREF1058_RS11830 at 274.490 kb on - strand, within HMPREF1058_RS11830 at 274.501 kb on + strand, within HMPREF1058_RS11830 at 274.519 kb on + strand, within HMPREF1058_RS11830 at 274.593 kb on + strand, within HMPREF1058_RS11830 at 274.594 kb on - strand, within HMPREF1058_RS11830 at 274.598 kb on + strand, within HMPREF1058_RS11830 at 274.598 kb on + strand, within HMPREF1058_RS11830 at 274.599 kb on - strand, within HMPREF1058_RS11830 at 274.609 kb on + strand, within HMPREF1058_RS11830 at 274.610 kb on - strand, within HMPREF1058_RS11830 at 274.679 kb on + strand, within HMPREF1058_RS11830 at 274.693 kb on + strand, within HMPREF1058_RS11830 at 274.694 kb on - strand, within HMPREF1058_RS11830 at 274.746 kb on - strand, within HMPREF1058_RS11830 at 274.782 kb on + strand, within HMPREF1058_RS11830 at 274.783 kb on - strand, within HMPREF1058_RS11830 at 274.783 kb on - strand, within HMPREF1058_RS11830 at 274.783 kb on - strand, within HMPREF1058_RS11830 at 274.783 kb on - strand, within HMPREF1058_RS11830 at 274.836 kb on + strand, within HMPREF1058_RS11830 at 274.963 kb on + strand, within HMPREF1058_RS11830 at 275.034 kb on + strand at 275.035 kb on - strand at 275.035 kb on - strand at 275.075 kb on + strand at 275.075 kb on + strand at 275.111 kb on + strand at 275.168 kb on - strand at 275.188 kb on - strand at 275.188 kb on - strand at 275.589 kb on - strand, within HMPREF1058_RS11825 at 275.646 kb on - strand, within HMPREF1058_RS11825 at 275.666 kb on - strand, within HMPREF1058_RS11825 at 275.668 kb on - strand, within HMPREF1058_RS11825 at 275.767 kb on + strand at 275.768 kb on - strand at 275.798 kb on + strand at 275.809 kb on + strand at 275.809 kb on + strand at 275.814 kb on + strand at 275.831 kb on - strand at 275.902 kb on - strand at 276.008 kb on - strand at 276.020 kb on - strand at 276.047 kb on + strand at 276.055 kb on + strand at 276.075 kb on - strand at 276.081 kb on + strand at 276.082 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Galactan from Potato 2.5 mg/ml (C) remove 271,721 - HMPREF1058_RS11840 0.89 -0.5 271,733 + HMPREF1058_RS11840 0.89 +0.5 271,733 + HMPREF1058_RS11840 0.89 +1.8 271,734 - HMPREF1058_RS11840 0.89 +2.2 271,736 - HMPREF1058_RS11840 0.89 +2.6 271,736 - HMPREF1058_RS11840 0.89 +0.3 271,742 - HMPREF1058_RS11840 0.89 -0.7 271,745 - HMPREF1058_RS11840 0.89 +0.1 271,755 + HMPREF1058_RS11840 0.90 +0.3 271,819 + +1.7 271,819 + +0.3 271,820 - +0.6 271,820 - +2.8 271,911 + +0.1 271,958 - +0.2 272,004 + +0.3 272,036 + +1.0 272,083 - -0.3 272,098 + +0.3 272,112 - +0.1 272,115 + +1.7 272,190 - -1.0 272,191 + +0.1 272,192 - -0.4 272,207 - -0.7 272,276 + HMPREF1058_RS11835 0.29 -0.4 272,326 - HMPREF1058_RS11835 0.43 -0.6 272,341 - HMPREF1058_RS11835 0.47 -0.2 272,351 + HMPREF1058_RS11835 0.50 +0.8 272,356 + HMPREF1058_RS11835 0.52 -0.3 272,357 - HMPREF1058_RS11835 0.52 +0.1 272,357 - HMPREF1058_RS11835 0.52 -0.3 272,395 - HMPREF1058_RS11835 0.63 +0.2 272,402 - HMPREF1058_RS11835 0.65 +0.2 272,434 + HMPREF1058_RS11835 0.74 -0.3 272,437 + HMPREF1058_RS11835 0.75 -0.6 272,483 + HMPREF1058_RS11835 0.88 +0.5 272,484 - HMPREF1058_RS11835 0.89 -0.6 272,487 + HMPREF1058_RS11835 0.89 +0.1 272,488 - HMPREF1058_RS11835 0.90 -0.6 272,513 - -2.8 272,546 - -0.7 272,555 + +0.1 272,555 + +1.0 272,574 + +1.4 272,655 + +2.0 272,655 + +1.2 272,706 + +0.9 272,706 + +1.0 272,707 - +0.5 272,711 - +0.2 272,740 + -0.0 272,743 + -0.1 272,743 + -0.4 272,761 + +0.5 272,810 - +0.2 272,819 - +1.1 272,868 - +0.3 272,880 + -1.2 272,881 - +1.3 272,884 + +0.1 272,884 + +1.5 272,884 + -0.4 272,884 + +0.5 272,885 - +0.3 272,886 + +1.4 272,887 - +0.1 272,887 - +1.3 272,887 - +0.5 272,887 - -0.1 272,921 - HMPREF1058_RS11830 0.10 -0.3 272,921 - HMPREF1058_RS11830 0.10 -1.0 272,938 - HMPREF1058_RS11830 0.11 +0.4 272,942 - HMPREF1058_RS11830 0.11 +1.2 273,007 + HMPREF1058_RS11830 0.13 -2.1 273,008 - HMPREF1058_RS11830 0.14 +1.0 273,067 + HMPREF1058_RS11830 0.16 +1.5 273,105 + HMPREF1058_RS11830 0.17 -0.3 273,105 + HMPREF1058_RS11830 0.17 +0.6 273,121 - HMPREF1058_RS11830 0.18 +0.5 273,125 - HMPREF1058_RS11830 0.18 +2.3 273,125 - HMPREF1058_RS11830 0.18 +0.8 273,166 + HMPREF1058_RS11830 0.20 +0.9 273,221 + HMPREF1058_RS11830 0.22 +1.7 273,223 + HMPREF1058_RS11830 0.22 -0.2 273,223 + HMPREF1058_RS11830 0.22 +1.4 273,239 + HMPREF1058_RS11830 0.22 -2.1 273,239 + HMPREF1058_RS11830 0.22 +0.4 273,239 + HMPREF1058_RS11830 0.22 +2.3 273,240 - HMPREF1058_RS11830 0.22 +0.5 273,241 + HMPREF1058_RS11830 0.22 +1.3 273,301 + HMPREF1058_RS11830 0.25 +2.0 273,302 - HMPREF1058_RS11830 0.25 -0.4 273,335 + HMPREF1058_RS11830 0.26 +0.5 273,336 - HMPREF1058_RS11830 0.26 +0.6 273,421 + HMPREF1058_RS11830 0.29 +0.1 273,422 - HMPREF1058_RS11830 0.29 -1.4 273,449 - HMPREF1058_RS11830 0.30 +1.4 273,452 + HMPREF1058_RS11830 0.31 +3.3 273,456 + HMPREF1058_RS11830 0.31 +1.2 273,457 - HMPREF1058_RS11830 0.31 +0.4 273,457 - HMPREF1058_RS11830 0.31 -0.2 273,457 - HMPREF1058_RS11830 0.31 -0.4 273,457 - HMPREF1058_RS11830 0.31 -1.4 273,491 - HMPREF1058_RS11830 0.32 +0.3 273,542 - HMPREF1058_RS11830 0.34 +0.2 273,544 + HMPREF1058_RS11830 0.34 -0.7 273,564 - HMPREF1058_RS11830 0.35 +0.5 273,666 + HMPREF1058_RS11830 0.39 +0.2 273,666 + HMPREF1058_RS11830 0.39 +0.4 273,670 + HMPREF1058_RS11830 0.39 +0.0 273,691 + HMPREF1058_RS11830 0.40 +0.3 273,827 + HMPREF1058_RS11830 0.45 +0.5 273,866 - HMPREF1058_RS11830 0.46 +0.8 273,878 - HMPREF1058_RS11830 0.47 +0.6 273,883 + HMPREF1058_RS11830 0.47 +0.6 273,884 - HMPREF1058_RS11830 0.47 +1.8 273,948 + HMPREF1058_RS11830 0.49 -0.8 273,948 + HMPREF1058_RS11830 0.49 +0.3 273,949 - HMPREF1058_RS11830 0.50 +1.1 273,949 - HMPREF1058_RS11830 0.50 +1.2 273,949 - HMPREF1058_RS11830 0.50 +0.7 273,954 - HMPREF1058_RS11830 0.50 +1.8 273,954 - HMPREF1058_RS11830 0.50 +1.7 273,986 - HMPREF1058_RS11830 0.51 +1.0 273,997 + HMPREF1058_RS11830 0.51 +0.3 274,038 - HMPREF1058_RS11830 0.53 +0.7 274,038 - HMPREF1058_RS11830 0.53 +0.0 274,046 + HMPREF1058_RS11830 0.53 -1.7 274,047 - HMPREF1058_RS11830 0.53 +1.8 274,050 + HMPREF1058_RS11830 0.53 +0.4 274,051 - HMPREF1058_RS11830 0.53 +0.4 274,054 - HMPREF1058_RS11830 0.54 +1.2 274,060 - HMPREF1058_RS11830 0.54 -0.0 274,094 - HMPREF1058_RS11830 0.55 +1.2 274,115 + HMPREF1058_RS11830 0.56 +1.9 274,125 + HMPREF1058_RS11830 0.56 +0.9 274,133 - HMPREF1058_RS11830 0.57 -0.3 274,149 - HMPREF1058_RS11830 0.57 +0.8 274,204 + HMPREF1058_RS11830 0.59 +1.5 274,205 - -1.6 274,257 + HMPREF1058_RS11830 0.61 +0.1 274,260 - HMPREF1058_RS11830 0.61 +2.1 274,282 + HMPREF1058_RS11830 0.62 -1.0 274,283 - HMPREF1058_RS11830 0.62 +2.2 274,283 - HMPREF1058_RS11830 0.62 +2.4 274,284 + HMPREF1058_RS11830 0.62 +1.1 274,284 + HMPREF1058_RS11830 0.62 +1.7 274,284 + HMPREF1058_RS11830 0.62 +1.7 274,285 - HMPREF1058_RS11830 0.62 +0.7 274,302 + HMPREF1058_RS11830 0.63 +0.6 274,303 - HMPREF1058_RS11830 0.63 +1.4 274,303 - HMPREF1058_RS11830 0.63 +1.5 274,303 - HMPREF1058_RS11830 0.63 -0.8 274,335 + HMPREF1058_RS11830 0.64 -0.2 274,336 - HMPREF1058_RS11830 0.64 +1.6 274,369 + HMPREF1058_RS11830 0.66 +0.8 274,369 + HMPREF1058_RS11830 0.66 +1.3 274,372 - HMPREF1058_RS11830 0.66 +0.2 274,490 - HMPREF1058_RS11830 0.70 +1.2 274,501 + HMPREF1058_RS11830 0.71 +0.8 274,519 + HMPREF1058_RS11830 0.71 +0.3 274,593 + HMPREF1058_RS11830 0.74 +0.5 274,594 - HMPREF1058_RS11830 0.74 -0.2 274,598 + HMPREF1058_RS11830 0.74 +0.8 274,598 + HMPREF1058_RS11830 0.74 +0.6 274,599 - HMPREF1058_RS11830 0.74 +0.8 274,609 + HMPREF1058_RS11830 0.75 +1.2 274,610 - HMPREF1058_RS11830 0.75 +1.4 274,679 + HMPREF1058_RS11830 0.77 -0.2 274,693 + HMPREF1058_RS11830 0.78 -0.1 274,694 - HMPREF1058_RS11830 0.78 +2.2 274,746 - HMPREF1058_RS11830 0.80 +0.3 274,782 + HMPREF1058_RS11830 0.81 -0.7 274,783 - HMPREF1058_RS11830 0.81 +0.5 274,783 - HMPREF1058_RS11830 0.81 +1.5 274,783 - HMPREF1058_RS11830 0.81 +1.8 274,783 - HMPREF1058_RS11830 0.81 +1.3 274,836 + HMPREF1058_RS11830 0.83 +2.6 274,963 + HMPREF1058_RS11830 0.88 +0.4 275,034 + +1.9 275,035 - +1.1 275,035 - +0.7 275,075 + +1.1 275,075 + +1.2 275,111 + +0.1 275,168 - +0.4 275,188 - +1.7 275,188 - +1.1 275,589 - HMPREF1058_RS11825 0.55 +2.1 275,646 - HMPREF1058_RS11825 0.67 +2.3 275,666 - HMPREF1058_RS11825 0.71 +1.3 275,668 - HMPREF1058_RS11825 0.71 +1.4 275,767 + +2.9 275,768 - -1.7 275,798 + +2.8 275,809 + +1.0 275,809 + +2.9 275,814 + +2.6 275,831 - +2.5 275,902 - +1.3 276,008 - +1.0 276,020 - +1.3 276,047 + -3.1 276,055 + -1.6 276,075 - -0.6 276,081 + -2.5 276,082 - -1.6
Or see this region's nucleotide sequence