Experiment: Galactan from Potato 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS11760 and HMPREF1058_RS11755 are separated by 203 nucleotides HMPREF1058_RS11755 and HMPREF1058_RS11750 are separated by 39 nucleotides HMPREF1058_RS11750 and HMPREF1058_RS11745 are separated by 4 nucleotides
HMPREF1058_RS11760: HMPREF1058_RS11760 - TonB-dependent receptor, at 295,603 to 298,857
_RS11760
HMPREF1058_RS11755: HMPREF1058_RS11755 - mannonate dehydratase, at 299,061 to 300,236
_RS11755
HMPREF1058_RS11750: HMPREF1058_RS11750 - SDR family oxidoreductase, at 300,276 to 301,088
_RS11750
HMPREF1058_RS11745: HMPREF1058_RS11745 - WbqC family protein, at 301,093 to 301,749
_RS11745
Position (kb) 299
300
301 Strain fitness (log2 ratio) -2
-1
0
1
2 at 298.081 kb on - strand, within HMPREF1058_RS11760 at 298.116 kb on + strand, within HMPREF1058_RS11760 at 298.117 kb on - strand, within HMPREF1058_RS11760 at 298.158 kb on + strand, within HMPREF1058_RS11760 at 298.159 kb on - strand, within HMPREF1058_RS11760 at 298.199 kb on + strand, within HMPREF1058_RS11760 at 298.289 kb on - strand, within HMPREF1058_RS11760 at 298.294 kb on + strand, within HMPREF1058_RS11760 at 298.295 kb on - strand, within HMPREF1058_RS11760 at 298.298 kb on + strand, within HMPREF1058_RS11760 at 298.298 kb on + strand, within HMPREF1058_RS11760 at 298.298 kb on + strand, within HMPREF1058_RS11760 at 298.299 kb on - strand, within HMPREF1058_RS11760 at 298.570 kb on - strand at 298.600 kb on - strand at 298.612 kb on - strand at 298.613 kb on + strand at 298.613 kb on + strand at 298.613 kb on + strand at 298.614 kb on - strand at 298.614 kb on - strand at 298.624 kb on + strand at 298.723 kb on + strand at 298.810 kb on - strand at 298.973 kb on + strand at 298.976 kb on + strand at 299.085 kb on + strand at 299.127 kb on - strand at 299.127 kb on - strand at 299.176 kb on - strand at 299.204 kb on + strand, within HMPREF1058_RS11755 at 299.211 kb on - strand, within HMPREF1058_RS11755 at 299.250 kb on - strand, within HMPREF1058_RS11755 at 299.250 kb on - strand, within HMPREF1058_RS11755 at 299.253 kb on + strand, within HMPREF1058_RS11755 at 299.260 kb on + strand, within HMPREF1058_RS11755 at 299.260 kb on + strand, within HMPREF1058_RS11755 at 299.260 kb on + strand, within HMPREF1058_RS11755 at 299.261 kb on - strand, within HMPREF1058_RS11755 at 299.297 kb on - strand, within HMPREF1058_RS11755 at 299.445 kb on + strand, within HMPREF1058_RS11755 at 299.445 kb on + strand, within HMPREF1058_RS11755 at 299.508 kb on - strand, within HMPREF1058_RS11755 at 299.514 kb on - strand, within HMPREF1058_RS11755 at 299.545 kb on - strand, within HMPREF1058_RS11755 at 299.664 kb on - strand, within HMPREF1058_RS11755 at 299.664 kb on - strand, within HMPREF1058_RS11755 at 299.699 kb on + strand, within HMPREF1058_RS11755 at 299.699 kb on + strand, within HMPREF1058_RS11755 at 299.700 kb on - strand, within HMPREF1058_RS11755 at 299.876 kb on + strand, within HMPREF1058_RS11755 at 299.876 kb on + strand, within HMPREF1058_RS11755 at 299.876 kb on + strand, within HMPREF1058_RS11755 at 299.876 kb on + strand, within HMPREF1058_RS11755 at 299.876 kb on + strand, within HMPREF1058_RS11755 at 299.876 kb on + strand, within HMPREF1058_RS11755 at 299.877 kb on - strand, within HMPREF1058_RS11755 at 299.877 kb on - strand, within HMPREF1058_RS11755 at 299.907 kb on + strand, within HMPREF1058_RS11755 at 299.922 kb on - strand at 299.923 kb on + strand, within HMPREF1058_RS11755 at 299.935 kb on + strand, within HMPREF1058_RS11755 at 299.936 kb on - strand, within HMPREF1058_RS11755 at 299.975 kb on - strand, within HMPREF1058_RS11755 at 300.111 kb on + strand, within HMPREF1058_RS11755 at 300.111 kb on + strand, within HMPREF1058_RS11755 at 300.112 kb on - strand, within HMPREF1058_RS11755 at 300.135 kb on + strand at 300.135 kb on + strand at 300.135 kb on + strand at 300.135 kb on + strand at 300.136 kb on - strand at 300.136 kb on - strand at 300.136 kb on - strand at 300.259 kb on + strand at 300.306 kb on + strand at 300.306 kb on + strand at 300.306 kb on + strand at 300.356 kb on - strand at 300.356 kb on - strand at 300.437 kb on + strand, within HMPREF1058_RS11750 at 300.438 kb on - strand, within HMPREF1058_RS11750 at 300.439 kb on + strand, within HMPREF1058_RS11750 at 300.439 kb on + strand, within HMPREF1058_RS11750 at 300.439 kb on + strand, within HMPREF1058_RS11750 at 300.440 kb on - strand, within HMPREF1058_RS11750 at 300.443 kb on + strand, within HMPREF1058_RS11750 at 300.443 kb on + strand, within HMPREF1058_RS11750 at 300.443 kb on + strand, within HMPREF1058_RS11750 at 300.444 kb on - strand, within HMPREF1058_RS11750 at 300.444 kb on - strand, within HMPREF1058_RS11750 at 300.603 kb on + strand, within HMPREF1058_RS11750 at 300.633 kb on - strand, within HMPREF1058_RS11750 at 300.785 kb on + strand, within HMPREF1058_RS11750 at 300.798 kb on - strand, within HMPREF1058_RS11750 at 300.828 kb on + strand, within HMPREF1058_RS11750 at 300.838 kb on + strand, within HMPREF1058_RS11750 at 300.838 kb on + strand, within HMPREF1058_RS11750 at 300.874 kb on - strand, within HMPREF1058_RS11750 at 300.875 kb on + strand, within HMPREF1058_RS11750 at 300.875 kb on + strand, within HMPREF1058_RS11750 at 300.875 kb on + strand, within HMPREF1058_RS11750 at 300.976 kb on - strand, within HMPREF1058_RS11750 at 301.083 kb on - strand at 301.091 kb on + strand at 301.092 kb on - strand at 301.109 kb on - strand at 301.158 kb on + strand at 301.158 kb on + strand at 301.224 kb on - strand, within HMPREF1058_RS11745
Per-strain Table
Position Strand Gene LocusTag Fraction Galactan from Potato 2.5 mg/ml (C) remove 298,081 - HMPREF1058_RS11760 0.76 -1.1 298,116 + HMPREF1058_RS11760 0.77 +0.2 298,117 - HMPREF1058_RS11760 0.77 +1.5 298,158 + HMPREF1058_RS11760 0.78 -0.4 298,159 - HMPREF1058_RS11760 0.79 -0.7 298,199 + HMPREF1058_RS11760 0.80 -1.0 298,289 - HMPREF1058_RS11760 0.83 +0.2 298,294 + HMPREF1058_RS11760 0.83 -0.8 298,295 - HMPREF1058_RS11760 0.83 -0.4 298,298 + HMPREF1058_RS11760 0.83 -0.0 298,298 + HMPREF1058_RS11760 0.83 +0.8 298,298 + HMPREF1058_RS11760 0.83 +0.9 298,299 - HMPREF1058_RS11760 0.83 +0.2 298,570 - +0.9 298,600 - -2.6 298,612 - -2.2 298,613 + -0.3 298,613 + -0.4 298,613 + +0.6 298,614 - -1.0 298,614 - -2.0 298,624 + +1.3 298,723 + -1.0 298,810 - -1.9 298,973 + +0.8 298,976 + -0.7 299,085 + -1.0 299,127 - +0.1 299,127 - -0.1 299,176 - -1.2 299,204 + HMPREF1058_RS11755 0.12 -1.1 299,211 - HMPREF1058_RS11755 0.13 -0.5 299,250 - HMPREF1058_RS11755 0.16 +0.4 299,250 - HMPREF1058_RS11755 0.16 -2.7 299,253 + HMPREF1058_RS11755 0.16 -0.4 299,260 + HMPREF1058_RS11755 0.17 +0.8 299,260 + HMPREF1058_RS11755 0.17 -0.7 299,260 + HMPREF1058_RS11755 0.17 -0.5 299,261 - HMPREF1058_RS11755 0.17 -0.6 299,297 - HMPREF1058_RS11755 0.20 -0.1 299,445 + HMPREF1058_RS11755 0.33 -0.2 299,445 + HMPREF1058_RS11755 0.33 -0.9 299,508 - HMPREF1058_RS11755 0.38 +0.6 299,514 - HMPREF1058_RS11755 0.39 +0.2 299,545 - HMPREF1058_RS11755 0.41 -0.2 299,664 - HMPREF1058_RS11755 0.51 +0.4 299,664 - HMPREF1058_RS11755 0.51 +0.7 299,699 + HMPREF1058_RS11755 0.54 -0.4 299,699 + HMPREF1058_RS11755 0.54 -1.0 299,700 - HMPREF1058_RS11755 0.54 +1.4 299,876 + HMPREF1058_RS11755 0.69 -1.4 299,876 + HMPREF1058_RS11755 0.69 -0.7 299,876 + HMPREF1058_RS11755 0.69 -1.8 299,876 + HMPREF1058_RS11755 0.69 -0.1 299,876 + HMPREF1058_RS11755 0.69 -1.0 299,876 + HMPREF1058_RS11755 0.69 -0.1 299,877 - HMPREF1058_RS11755 0.69 -0.7 299,877 - HMPREF1058_RS11755 0.69 -1.7 299,907 + HMPREF1058_RS11755 0.72 -0.2 299,922 - +1.2 299,923 + HMPREF1058_RS11755 0.73 +0.4 299,935 + HMPREF1058_RS11755 0.74 -0.4 299,936 - HMPREF1058_RS11755 0.74 -1.5 299,975 - HMPREF1058_RS11755 0.78 +1.4 300,111 + HMPREF1058_RS11755 0.89 -0.7 300,111 + HMPREF1058_RS11755 0.89 -0.5 300,112 - HMPREF1058_RS11755 0.89 -0.4 300,135 + +0.5 300,135 + +2.7 300,135 + -0.5 300,135 + -1.9 300,136 - -0.2 300,136 - -0.6 300,136 - +0.4 300,259 + -0.2 300,306 + -1.5 300,306 + -1.5 300,306 + +0.6 300,356 - -0.9 300,356 - -0.1 300,437 + HMPREF1058_RS11750 0.20 -0.1 300,438 - HMPREF1058_RS11750 0.20 -1.0 300,439 + HMPREF1058_RS11750 0.20 +1.4 300,439 + HMPREF1058_RS11750 0.20 -0.3 300,439 + HMPREF1058_RS11750 0.20 -0.3 300,440 - HMPREF1058_RS11750 0.20 -2.5 300,443 + HMPREF1058_RS11750 0.21 +0.4 300,443 + HMPREF1058_RS11750 0.21 +0.1 300,443 + HMPREF1058_RS11750 0.21 -0.1 300,444 - HMPREF1058_RS11750 0.21 +0.0 300,444 - HMPREF1058_RS11750 0.21 -0.9 300,603 + HMPREF1058_RS11750 0.40 +0.6 300,633 - HMPREF1058_RS11750 0.44 -1.0 300,785 + HMPREF1058_RS11750 0.63 +0.3 300,798 - HMPREF1058_RS11750 0.64 +0.2 300,828 + HMPREF1058_RS11750 0.68 -1.1 300,838 + HMPREF1058_RS11750 0.69 -0.6 300,838 + HMPREF1058_RS11750 0.69 +0.6 300,874 - HMPREF1058_RS11750 0.74 +0.1 300,875 + HMPREF1058_RS11750 0.74 -1.5 300,875 + HMPREF1058_RS11750 0.74 -1.0 300,875 + HMPREF1058_RS11750 0.74 -0.3 300,976 - HMPREF1058_RS11750 0.86 +1.2 301,083 - +2.6 301,091 + -1.0 301,092 - -0.4 301,109 - -0.6 301,158 + -0.2 301,158 + -0.2 301,224 - HMPREF1058_RS11745 0.20 -0.7
Or see this region's nucleotide sequence