Experiment: Galactan from Potato 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS11755 and HMPREF1058_RS11750 are separated by 39 nucleotides HMPREF1058_RS11750 and HMPREF1058_RS11745 are separated by 4 nucleotides HMPREF1058_RS11745 and HMPREF1058_RS11740 overlap by 1 nucleotides
HMPREF1058_RS11755: HMPREF1058_RS11755 - mannonate dehydratase, at 299,061 to 300,236
_RS11755
HMPREF1058_RS11750: HMPREF1058_RS11750 - SDR family oxidoreductase, at 300,276 to 301,088
_RS11750
HMPREF1058_RS11745: HMPREF1058_RS11745 - WbqC family protein, at 301,093 to 301,749
_RS11745
HMPREF1058_RS11740: HMPREF1058_RS11740 - signal peptidase I, at 301,749 to 302,612
_RS11740
Position (kb) 300
301
302 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 299.297 kb on - strand, within HMPREF1058_RS11755 at 299.445 kb on + strand, within HMPREF1058_RS11755 at 299.445 kb on + strand, within HMPREF1058_RS11755 at 299.508 kb on - strand, within HMPREF1058_RS11755 at 299.514 kb on - strand, within HMPREF1058_RS11755 at 299.545 kb on - strand, within HMPREF1058_RS11755 at 299.664 kb on - strand, within HMPREF1058_RS11755 at 299.664 kb on - strand, within HMPREF1058_RS11755 at 299.699 kb on + strand, within HMPREF1058_RS11755 at 299.699 kb on + strand, within HMPREF1058_RS11755 at 299.700 kb on - strand, within HMPREF1058_RS11755 at 299.876 kb on + strand, within HMPREF1058_RS11755 at 299.876 kb on + strand, within HMPREF1058_RS11755 at 299.876 kb on + strand, within HMPREF1058_RS11755 at 299.876 kb on + strand, within HMPREF1058_RS11755 at 299.876 kb on + strand, within HMPREF1058_RS11755 at 299.876 kb on + strand, within HMPREF1058_RS11755 at 299.877 kb on - strand, within HMPREF1058_RS11755 at 299.877 kb on - strand, within HMPREF1058_RS11755 at 299.907 kb on + strand, within HMPREF1058_RS11755 at 299.922 kb on - strand at 299.923 kb on + strand, within HMPREF1058_RS11755 at 299.935 kb on + strand, within HMPREF1058_RS11755 at 299.936 kb on - strand, within HMPREF1058_RS11755 at 299.975 kb on - strand, within HMPREF1058_RS11755 at 300.111 kb on + strand, within HMPREF1058_RS11755 at 300.111 kb on + strand, within HMPREF1058_RS11755 at 300.112 kb on - strand, within HMPREF1058_RS11755 at 300.135 kb on + strand at 300.135 kb on + strand at 300.135 kb on + strand at 300.135 kb on + strand at 300.136 kb on - strand at 300.136 kb on - strand at 300.136 kb on - strand at 300.259 kb on + strand at 300.306 kb on + strand at 300.306 kb on + strand at 300.306 kb on + strand at 300.356 kb on - strand at 300.356 kb on - strand at 300.437 kb on + strand, within HMPREF1058_RS11750 at 300.438 kb on - strand, within HMPREF1058_RS11750 at 300.439 kb on + strand, within HMPREF1058_RS11750 at 300.439 kb on + strand, within HMPREF1058_RS11750 at 300.439 kb on + strand, within HMPREF1058_RS11750 at 300.440 kb on - strand, within HMPREF1058_RS11750 at 300.443 kb on + strand, within HMPREF1058_RS11750 at 300.443 kb on + strand, within HMPREF1058_RS11750 at 300.443 kb on + strand, within HMPREF1058_RS11750 at 300.444 kb on - strand, within HMPREF1058_RS11750 at 300.444 kb on - strand, within HMPREF1058_RS11750 at 300.603 kb on + strand, within HMPREF1058_RS11750 at 300.633 kb on - strand, within HMPREF1058_RS11750 at 300.785 kb on + strand, within HMPREF1058_RS11750 at 300.798 kb on - strand, within HMPREF1058_RS11750 at 300.828 kb on + strand, within HMPREF1058_RS11750 at 300.838 kb on + strand, within HMPREF1058_RS11750 at 300.838 kb on + strand, within HMPREF1058_RS11750 at 300.874 kb on - strand, within HMPREF1058_RS11750 at 300.875 kb on + strand, within HMPREF1058_RS11750 at 300.875 kb on + strand, within HMPREF1058_RS11750 at 300.875 kb on + strand, within HMPREF1058_RS11750 at 300.976 kb on - strand, within HMPREF1058_RS11750 at 301.083 kb on - strand at 301.091 kb on + strand at 301.092 kb on - strand at 301.109 kb on - strand at 301.158 kb on + strand at 301.158 kb on + strand at 301.224 kb on - strand, within HMPREF1058_RS11745 at 301.278 kb on + strand, within HMPREF1058_RS11745 at 301.322 kb on + strand, within HMPREF1058_RS11745 at 301.322 kb on + strand, within HMPREF1058_RS11745 at 301.323 kb on - strand, within HMPREF1058_RS11745 at 301.373 kb on - strand, within HMPREF1058_RS11745 at 301.392 kb on + strand, within HMPREF1058_RS11745 at 301.412 kb on + strand, within HMPREF1058_RS11745 at 301.448 kb on + strand, within HMPREF1058_RS11745 at 301.448 kb on + strand, within HMPREF1058_RS11745 at 301.473 kb on + strand, within HMPREF1058_RS11745 at 301.474 kb on - strand, within HMPREF1058_RS11745 at 301.502 kb on - strand, within HMPREF1058_RS11745 at 301.504 kb on - strand, within HMPREF1058_RS11745 at 301.656 kb on - strand, within HMPREF1058_RS11745 at 301.667 kb on + strand, within HMPREF1058_RS11745 at 301.696 kb on - strand at 301.701 kb on - strand at 301.733 kb on + strand at 301.735 kb on + strand at 301.902 kb on - strand, within HMPREF1058_RS11740 at 301.908 kb on - strand, within HMPREF1058_RS11740 at 301.917 kb on + strand, within HMPREF1058_RS11740 at 301.918 kb on - strand, within HMPREF1058_RS11740 at 301.937 kb on - strand, within HMPREF1058_RS11740 at 301.937 kb on - strand, within HMPREF1058_RS11740 at 301.986 kb on - strand, within HMPREF1058_RS11740 at 301.986 kb on - strand, within HMPREF1058_RS11740 at 301.989 kb on - strand, within HMPREF1058_RS11740 at 301.989 kb on - strand, within HMPREF1058_RS11740 at 302.018 kb on - strand, within HMPREF1058_RS11740 at 302.019 kb on + strand, within HMPREF1058_RS11740 at 302.019 kb on + strand, within HMPREF1058_RS11740 at 302.020 kb on - strand, within HMPREF1058_RS11740 at 302.020 kb on - strand, within HMPREF1058_RS11740 at 302.071 kb on - strand, within HMPREF1058_RS11740 at 302.073 kb on - strand, within HMPREF1058_RS11740 at 302.073 kb on - strand, within HMPREF1058_RS11740 at 302.079 kb on - strand, within HMPREF1058_RS11740
Per-strain Table
Position Strand Gene LocusTag Fraction Galactan from Potato 2.5 mg/ml (C) remove 299,297 - HMPREF1058_RS11755 0.20 -0.1 299,445 + HMPREF1058_RS11755 0.33 -0.2 299,445 + HMPREF1058_RS11755 0.33 -0.9 299,508 - HMPREF1058_RS11755 0.38 +0.6 299,514 - HMPREF1058_RS11755 0.39 +0.2 299,545 - HMPREF1058_RS11755 0.41 -0.2 299,664 - HMPREF1058_RS11755 0.51 +0.4 299,664 - HMPREF1058_RS11755 0.51 +0.7 299,699 + HMPREF1058_RS11755 0.54 -0.4 299,699 + HMPREF1058_RS11755 0.54 -1.0 299,700 - HMPREF1058_RS11755 0.54 +1.4 299,876 + HMPREF1058_RS11755 0.69 -1.4 299,876 + HMPREF1058_RS11755 0.69 -0.7 299,876 + HMPREF1058_RS11755 0.69 -1.8 299,876 + HMPREF1058_RS11755 0.69 -0.1 299,876 + HMPREF1058_RS11755 0.69 -1.0 299,876 + HMPREF1058_RS11755 0.69 -0.1 299,877 - HMPREF1058_RS11755 0.69 -0.7 299,877 - HMPREF1058_RS11755 0.69 -1.7 299,907 + HMPREF1058_RS11755 0.72 -0.2 299,922 - +1.2 299,923 + HMPREF1058_RS11755 0.73 +0.4 299,935 + HMPREF1058_RS11755 0.74 -0.4 299,936 - HMPREF1058_RS11755 0.74 -1.5 299,975 - HMPREF1058_RS11755 0.78 +1.4 300,111 + HMPREF1058_RS11755 0.89 -0.7 300,111 + HMPREF1058_RS11755 0.89 -0.5 300,112 - HMPREF1058_RS11755 0.89 -0.4 300,135 + +0.5 300,135 + +2.7 300,135 + -0.5 300,135 + -1.9 300,136 - -0.2 300,136 - -0.6 300,136 - +0.4 300,259 + -0.2 300,306 + -1.5 300,306 + -1.5 300,306 + +0.6 300,356 - -0.9 300,356 - -0.1 300,437 + HMPREF1058_RS11750 0.20 -0.1 300,438 - HMPREF1058_RS11750 0.20 -1.0 300,439 + HMPREF1058_RS11750 0.20 +1.4 300,439 + HMPREF1058_RS11750 0.20 -0.3 300,439 + HMPREF1058_RS11750 0.20 -0.3 300,440 - HMPREF1058_RS11750 0.20 -2.5 300,443 + HMPREF1058_RS11750 0.21 +0.4 300,443 + HMPREF1058_RS11750 0.21 +0.1 300,443 + HMPREF1058_RS11750 0.21 -0.1 300,444 - HMPREF1058_RS11750 0.21 +0.0 300,444 - HMPREF1058_RS11750 0.21 -0.9 300,603 + HMPREF1058_RS11750 0.40 +0.6 300,633 - HMPREF1058_RS11750 0.44 -1.0 300,785 + HMPREF1058_RS11750 0.63 +0.3 300,798 - HMPREF1058_RS11750 0.64 +0.2 300,828 + HMPREF1058_RS11750 0.68 -1.1 300,838 + HMPREF1058_RS11750 0.69 -0.6 300,838 + HMPREF1058_RS11750 0.69 +0.6 300,874 - HMPREF1058_RS11750 0.74 +0.1 300,875 + HMPREF1058_RS11750 0.74 -1.5 300,875 + HMPREF1058_RS11750 0.74 -1.0 300,875 + HMPREF1058_RS11750 0.74 -0.3 300,976 - HMPREF1058_RS11750 0.86 +1.2 301,083 - +2.6 301,091 + -1.0 301,092 - -0.4 301,109 - -0.6 301,158 + -0.2 301,158 + -0.2 301,224 - HMPREF1058_RS11745 0.20 -0.7 301,278 + HMPREF1058_RS11745 0.28 -0.5 301,322 + HMPREF1058_RS11745 0.35 +0.6 301,322 + HMPREF1058_RS11745 0.35 +0.6 301,323 - HMPREF1058_RS11745 0.35 -0.0 301,373 - HMPREF1058_RS11745 0.43 -2.7 301,392 + HMPREF1058_RS11745 0.46 -1.8 301,412 + HMPREF1058_RS11745 0.49 +4.8 301,448 + HMPREF1058_RS11745 0.54 -0.0 301,448 + HMPREF1058_RS11745 0.54 -0.3 301,473 + HMPREF1058_RS11745 0.58 -0.8 301,474 - HMPREF1058_RS11745 0.58 -0.2 301,502 - HMPREF1058_RS11745 0.62 +0.4 301,504 - HMPREF1058_RS11745 0.63 -3.4 301,656 - HMPREF1058_RS11745 0.86 -0.4 301,667 + HMPREF1058_RS11745 0.87 -1.7 301,696 - -1.0 301,701 - -0.6 301,733 + +0.2 301,735 + -2.5 301,902 - HMPREF1058_RS11740 0.18 -0.4 301,908 - HMPREF1058_RS11740 0.18 -2.6 301,917 + HMPREF1058_RS11740 0.19 -2.0 301,918 - HMPREF1058_RS11740 0.20 -1.0 301,937 - HMPREF1058_RS11740 0.22 -0.8 301,937 - HMPREF1058_RS11740 0.22 +0.6 301,986 - HMPREF1058_RS11740 0.27 -1.6 301,986 - HMPREF1058_RS11740 0.27 -0.9 301,989 - HMPREF1058_RS11740 0.28 -0.8 301,989 - HMPREF1058_RS11740 0.28 -0.1 302,018 - HMPREF1058_RS11740 0.31 -0.5 302,019 + HMPREF1058_RS11740 0.31 -1.2 302,019 + HMPREF1058_RS11740 0.31 -0.6 302,020 - HMPREF1058_RS11740 0.31 -0.3 302,020 - HMPREF1058_RS11740 0.31 +0.8 302,071 - HMPREF1058_RS11740 0.37 +0.6 302,073 - HMPREF1058_RS11740 0.38 -3.2 302,073 - HMPREF1058_RS11740 0.38 -0.2 302,079 - HMPREF1058_RS11740 0.38 -2.1
Or see this region's nucleotide sequence