Experiment: Galactan from Potato 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS11490 and HMPREF1058_RS11485 are separated by 119 nucleotides HMPREF1058_RS11485 and HMPREF1058_RS11480 overlap by 4 nucleotides HMPREF1058_RS11480 and HMPREF1058_RS11475 are separated by 0 nucleotides
HMPREF1058_RS11490: HMPREF1058_RS11490 - redox-regulated ATPase YchF, at 367,315 to 368,418
_RS11490
HMPREF1058_RS11485: HMPREF1058_RS11485 - ketopantoate reductase family protein, at 368,538 to 369,449
_RS11485
HMPREF1058_RS11480: HMPREF1058_RS11480 - prolipoprotein diacylglyceryl transferase, at 369,446 to 370,267
_RS11480
HMPREF1058_RS11475: HMPREF1058_RS11475 - chloramphenicol acetyltransferase, at 370,268 to 370,924
_RS11475
Position (kb) 368
369
370 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 367.623 kb on - strand, within HMPREF1058_RS11490 at 367.801 kb on + strand, within HMPREF1058_RS11490 at 367.802 kb on - strand, within HMPREF1058_RS11490 at 367.859 kb on + strand, within HMPREF1058_RS11490 at 367.930 kb on + strand, within HMPREF1058_RS11490 at 367.931 kb on - strand, within HMPREF1058_RS11490 at 367.934 kb on + strand, within HMPREF1058_RS11490 at 367.975 kb on + strand, within HMPREF1058_RS11490 at 367.976 kb on - strand, within HMPREF1058_RS11490 at 368.071 kb on + strand, within HMPREF1058_RS11490 at 368.288 kb on + strand, within HMPREF1058_RS11490 at 368.314 kb on + strand at 368.372 kb on - strand at 368.378 kb on + strand at 368.414 kb on + strand at 368.414 kb on + strand at 368.416 kb on + strand at 368.417 kb on - strand at 368.534 kb on + strand at 368.534 kb on + strand at 368.535 kb on - strand at 368.687 kb on - strand, within HMPREF1058_RS11485 at 368.708 kb on + strand, within HMPREF1058_RS11485 at 368.709 kb on - strand, within HMPREF1058_RS11485 at 368.710 kb on + strand, within HMPREF1058_RS11485 at 368.710 kb on + strand, within HMPREF1058_RS11485 at 368.711 kb on - strand, within HMPREF1058_RS11485 at 368.733 kb on + strand, within HMPREF1058_RS11485 at 368.733 kb on + strand, within HMPREF1058_RS11485 at 368.893 kb on + strand, within HMPREF1058_RS11485 at 368.969 kb on - strand, within HMPREF1058_RS11485 at 369.040 kb on + strand, within HMPREF1058_RS11485 at 369.041 kb on - strand, within HMPREF1058_RS11485 at 369.245 kb on + strand, within HMPREF1058_RS11485 at 369.445 kb on + strand at 369.445 kb on + strand at 369.567 kb on + strand, within HMPREF1058_RS11480 at 369.569 kb on + strand, within HMPREF1058_RS11480 at 369.570 kb on - strand, within HMPREF1058_RS11480 at 369.677 kb on + strand, within HMPREF1058_RS11480 at 369.678 kb on - strand, within HMPREF1058_RS11480 at 369.678 kb on - strand, within HMPREF1058_RS11480 at 369.708 kb on + strand, within HMPREF1058_RS11480 at 369.818 kb on + strand, within HMPREF1058_RS11480 at 369.852 kb on + strand, within HMPREF1058_RS11480 at 369.863 kb on - strand, within HMPREF1058_RS11480 at 369.863 kb on - strand, within HMPREF1058_RS11480 at 369.863 kb on - strand, within HMPREF1058_RS11480 at 369.864 kb on + strand, within HMPREF1058_RS11480 at 369.865 kb on - strand, within HMPREF1058_RS11480 at 369.927 kb on + strand, within HMPREF1058_RS11480 at 369.931 kb on - strand, within HMPREF1058_RS11480 at 369.934 kb on + strand, within HMPREF1058_RS11480 at 369.934 kb on + strand, within HMPREF1058_RS11480 at 369.934 kb on + strand, within HMPREF1058_RS11480 at 369.979 kb on + strand, within HMPREF1058_RS11480 at 370.078 kb on - strand, within HMPREF1058_RS11480 at 370.178 kb on - strand, within HMPREF1058_RS11480 at 370.241 kb on + strand at 370.277 kb on - strand at 370.278 kb on + strand at 370.281 kb on + strand at 370.282 kb on - strand at 370.282 kb on - strand at 370.286 kb on - strand at 370.424 kb on + strand, within HMPREF1058_RS11475 at 370.431 kb on - strand, within HMPREF1058_RS11475
Per-strain Table
Position Strand Gene LocusTag Fraction Galactan from Potato 2.5 mg/ml (C) remove 367,623 - HMPREF1058_RS11490 0.28 -2.1 367,801 + HMPREF1058_RS11490 0.44 -3.4 367,802 - HMPREF1058_RS11490 0.44 -2.7 367,859 + HMPREF1058_RS11490 0.49 -0.6 367,930 + HMPREF1058_RS11490 0.56 -1.5 367,931 - HMPREF1058_RS11490 0.56 -1.0 367,934 + HMPREF1058_RS11490 0.56 -4.4 367,975 + HMPREF1058_RS11490 0.60 -3.6 367,976 - HMPREF1058_RS11490 0.60 -1.2 368,071 + HMPREF1058_RS11490 0.68 -2.1 368,288 + HMPREF1058_RS11490 0.88 -1.2 368,314 + -0.6 368,372 - -1.9 368,378 + -3.0 368,414 + +0.7 368,414 + +0.4 368,416 + +0.4 368,417 - -1.5 368,534 + -0.3 368,534 + +0.6 368,535 - -0.2 368,687 - HMPREF1058_RS11485 0.16 -1.6 368,708 + HMPREF1058_RS11485 0.19 -0.1 368,709 - HMPREF1058_RS11485 0.19 -0.1 368,710 + HMPREF1058_RS11485 0.19 +0.8 368,710 + HMPREF1058_RS11485 0.19 +1.7 368,711 - HMPREF1058_RS11485 0.19 +1.1 368,733 + HMPREF1058_RS11485 0.21 +0.7 368,733 + HMPREF1058_RS11485 0.21 +0.4 368,893 + HMPREF1058_RS11485 0.39 +0.7 368,969 - HMPREF1058_RS11485 0.47 -0.8 369,040 + HMPREF1058_RS11485 0.55 +0.9 369,041 - HMPREF1058_RS11485 0.55 -1.4 369,245 + HMPREF1058_RS11485 0.78 +0.5 369,445 + -0.1 369,445 + +0.8 369,567 + HMPREF1058_RS11480 0.15 +1.8 369,569 + HMPREF1058_RS11480 0.15 -0.9 369,570 - HMPREF1058_RS11480 0.15 -2.2 369,677 + HMPREF1058_RS11480 0.28 +2.2 369,678 - HMPREF1058_RS11480 0.28 +1.8 369,678 - HMPREF1058_RS11480 0.28 -0.5 369,708 + HMPREF1058_RS11480 0.32 +0.1 369,818 + HMPREF1058_RS11480 0.45 +1.5 369,852 + HMPREF1058_RS11480 0.49 +0.2 369,863 - HMPREF1058_RS11480 0.51 -0.9 369,863 - HMPREF1058_RS11480 0.51 -0.7 369,863 - HMPREF1058_RS11480 0.51 -0.0 369,864 + HMPREF1058_RS11480 0.51 +1.9 369,865 - HMPREF1058_RS11480 0.51 -1.0 369,927 + HMPREF1058_RS11480 0.59 +0.6 369,931 - HMPREF1058_RS11480 0.59 +0.3 369,934 + HMPREF1058_RS11480 0.59 +0.8 369,934 + HMPREF1058_RS11480 0.59 +0.3 369,934 + HMPREF1058_RS11480 0.59 +1.4 369,979 + HMPREF1058_RS11480 0.65 -0.1 370,078 - HMPREF1058_RS11480 0.77 -0.5 370,178 - HMPREF1058_RS11480 0.89 +0.9 370,241 + +1.7 370,277 - -0.9 370,278 + -0.8 370,281 + -0.1 370,282 - -0.3 370,282 - -0.6 370,286 - -0.6 370,424 + HMPREF1058_RS11475 0.24 -0.0 370,431 - HMPREF1058_RS11475 0.25 -0.4
Or see this region's nucleotide sequence