Experiment: Galactan from Potato 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS11060 and HMPREF1058_RS11055 are separated by 170 nucleotides HMPREF1058_RS11055 and HMPREF1058_RS11050 are separated by 36 nucleotides HMPREF1058_RS11050 and HMPREF1058_RS11045 are separated by 96 nucleotides
HMPREF1058_RS11060: HMPREF1058_RS11060 - D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase, at 488,629 to 490,029
_RS11060
HMPREF1058_RS11055: HMPREF1058_RS11055 - 5-dehydro-4-deoxy-D-glucuronate isomerase, at 490,200 to 491,042
_RS11055
HMPREF1058_RS11050: HMPREF1058_RS11050 - gluconate 5-dehydrogenase, at 491,079 to 491,882
_RS11050
HMPREF1058_RS11045: HMPREF1058_RS11045 - DUF4861 domain-containing protein, at 491,979 to 493,151
_RS11045
Position (kb) 490
491
492 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 489.213 kb on + strand, within HMPREF1058_RS11060 at 489.369 kb on - strand, within HMPREF1058_RS11060 at 489.371 kb on - strand, within HMPREF1058_RS11060 at 489.373 kb on - strand, within HMPREF1058_RS11060 at 489.479 kb on + strand, within HMPREF1058_RS11060 at 489.480 kb on - strand, within HMPREF1058_RS11060 at 489.480 kb on - strand, within HMPREF1058_RS11060 at 489.483 kb on + strand, within HMPREF1058_RS11060 at 489.491 kb on - strand, within HMPREF1058_RS11060 at 489.493 kb on - strand, within HMPREF1058_RS11060 at 489.547 kb on - strand, within HMPREF1058_RS11060 at 489.645 kb on + strand, within HMPREF1058_RS11060 at 489.680 kb on - strand, within HMPREF1058_RS11060 at 489.681 kb on + strand, within HMPREF1058_RS11060 at 489.681 kb on + strand, within HMPREF1058_RS11060 at 489.681 kb on + strand, within HMPREF1058_RS11060 at 489.682 kb on - strand, within HMPREF1058_RS11060 at 489.682 kb on - strand, within HMPREF1058_RS11060 at 489.714 kb on + strand, within HMPREF1058_RS11060 at 489.715 kb on - strand, within HMPREF1058_RS11060 at 489.715 kb on - strand, within HMPREF1058_RS11060 at 489.791 kb on - strand, within HMPREF1058_RS11060 at 489.914 kb on - strand at 489.917 kb on + strand at 489.918 kb on - strand at 490.019 kb on + strand at 490.020 kb on - strand at 490.058 kb on - strand at 490.061 kb on - strand at 490.061 kb on - strand at 490.080 kb on + strand at 490.102 kb on - strand at 490.191 kb on + strand at 490.192 kb on - strand at 490.271 kb on - strand at 490.326 kb on + strand, within HMPREF1058_RS11055 at 490.326 kb on + strand, within HMPREF1058_RS11055 at 490.327 kb on - strand, within HMPREF1058_RS11055 at 490.335 kb on + strand, within HMPREF1058_RS11055 at 490.335 kb on + strand, within HMPREF1058_RS11055 at 490.505 kb on + strand, within HMPREF1058_RS11055 at 490.506 kb on - strand, within HMPREF1058_RS11055 at 490.506 kb on - strand, within HMPREF1058_RS11055 at 490.590 kb on - strand, within HMPREF1058_RS11055 at 490.717 kb on + strand, within HMPREF1058_RS11055 at 490.891 kb on + strand, within HMPREF1058_RS11055 at 490.892 kb on - strand, within HMPREF1058_RS11055 at 490.935 kb on - strand, within HMPREF1058_RS11055 at 490.940 kb on + strand, within HMPREF1058_RS11055 at 490.963 kb on - strand at 491.047 kb on + strand at 491.049 kb on + strand at 491.049 kb on + strand at 491.050 kb on - strand at 491.069 kb on + strand at 491.071 kb on + strand at 491.071 kb on + strand at 491.071 kb on + strand at 491.071 kb on + strand at 491.071 kb on + strand at 491.072 kb on - strand at 491.072 kb on - strand at 491.072 kb on - strand at 491.075 kb on + strand at 491.111 kb on + strand at 491.117 kb on - strand at 491.125 kb on + strand at 491.241 kb on + strand, within HMPREF1058_RS11050 at 491.242 kb on - strand, within HMPREF1058_RS11050 at 491.271 kb on + strand, within HMPREF1058_RS11050 at 491.272 kb on - strand, within HMPREF1058_RS11050 at 491.272 kb on - strand, within HMPREF1058_RS11050 at 491.275 kb on + strand, within HMPREF1058_RS11050 at 491.276 kb on - strand, within HMPREF1058_RS11050 at 491.276 kb on - strand, within HMPREF1058_RS11050 at 491.322 kb on - strand, within HMPREF1058_RS11050 at 491.336 kb on - strand, within HMPREF1058_RS11050 at 491.519 kb on + strand, within HMPREF1058_RS11050 at 491.634 kb on - strand, within HMPREF1058_RS11050 at 491.634 kb on - strand, within HMPREF1058_RS11050 at 491.634 kb on - strand, within HMPREF1058_RS11050 at 491.652 kb on + strand, within HMPREF1058_RS11050 at 491.652 kb on + strand, within HMPREF1058_RS11050 at 491.653 kb on - strand, within HMPREF1058_RS11050 at 491.721 kb on - strand, within HMPREF1058_RS11050 at 491.788 kb on + strand, within HMPREF1058_RS11050 at 491.810 kb on + strand at 491.810 kb on + strand at 491.810 kb on + strand at 491.811 kb on - strand at 491.811 kb on - strand at 491.811 kb on - strand at 491.829 kb on - strand at 491.859 kb on + strand at 491.881 kb on - strand at 491.885 kb on - strand at 491.887 kb on + strand at 491.888 kb on - strand at 491.892 kb on - strand at 491.894 kb on - strand at 491.897 kb on + strand at 491.944 kb on - strand at 491.971 kb on + strand at 492.017 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Galactan from Potato 2.5 mg/ml (C) remove 489,213 + HMPREF1058_RS11060 0.42 +0.1 489,369 - HMPREF1058_RS11060 0.53 -0.7 489,371 - HMPREF1058_RS11060 0.53 -0.2 489,373 - HMPREF1058_RS11060 0.53 -0.4 489,479 + HMPREF1058_RS11060 0.61 +0.5 489,480 - HMPREF1058_RS11060 0.61 -0.5 489,480 - HMPREF1058_RS11060 0.61 -1.1 489,483 + HMPREF1058_RS11060 0.61 -0.6 489,491 - HMPREF1058_RS11060 0.62 -2.3 489,493 - HMPREF1058_RS11060 0.62 +2.0 489,547 - HMPREF1058_RS11060 0.66 -0.1 489,645 + HMPREF1058_RS11060 0.73 -1.0 489,680 - HMPREF1058_RS11060 0.75 -1.3 489,681 + HMPREF1058_RS11060 0.75 +1.2 489,681 + HMPREF1058_RS11060 0.75 -0.0 489,681 + HMPREF1058_RS11060 0.75 +0.9 489,682 - HMPREF1058_RS11060 0.75 -1.1 489,682 - HMPREF1058_RS11060 0.75 +0.4 489,714 + HMPREF1058_RS11060 0.77 +0.3 489,715 - HMPREF1058_RS11060 0.78 -0.1 489,715 - HMPREF1058_RS11060 0.78 -0.4 489,791 - HMPREF1058_RS11060 0.83 +1.6 489,914 - +0.0 489,917 + +0.5 489,918 - -0.1 490,019 + -0.6 490,020 - -0.0 490,058 - -1.3 490,061 - +0.4 490,061 - -1.8 490,080 + -0.9 490,102 - -1.7 490,191 + +0.0 490,192 - -0.5 490,271 - +0.2 490,326 + HMPREF1058_RS11055 0.15 -0.2 490,326 + HMPREF1058_RS11055 0.15 -0.5 490,327 - HMPREF1058_RS11055 0.15 -0.5 490,335 + HMPREF1058_RS11055 0.16 -0.2 490,335 + HMPREF1058_RS11055 0.16 -1.9 490,505 + HMPREF1058_RS11055 0.36 +1.0 490,506 - HMPREF1058_RS11055 0.36 +0.1 490,506 - HMPREF1058_RS11055 0.36 +0.3 490,590 - HMPREF1058_RS11055 0.46 -2.2 490,717 + HMPREF1058_RS11055 0.61 -1.4 490,891 + HMPREF1058_RS11055 0.82 -0.5 490,892 - HMPREF1058_RS11055 0.82 -0.8 490,935 - HMPREF1058_RS11055 0.87 -0.9 490,940 + HMPREF1058_RS11055 0.88 -0.1 490,963 - -1.9 491,047 + -0.9 491,049 + -0.2 491,049 + -1.1 491,050 - -0.7 491,069 + -1.5 491,071 + -0.6 491,071 + -0.9 491,071 + -0.5 491,071 + -2.6 491,071 + -1.4 491,072 - -1.4 491,072 - -0.0 491,072 - +0.2 491,075 + -0.6 491,111 + -0.6 491,117 - -0.3 491,125 + -0.7 491,241 + HMPREF1058_RS11050 0.20 +1.0 491,242 - HMPREF1058_RS11050 0.20 -1.7 491,271 + HMPREF1058_RS11050 0.24 -0.5 491,272 - HMPREF1058_RS11050 0.24 -2.2 491,272 - HMPREF1058_RS11050 0.24 -0.0 491,275 + HMPREF1058_RS11050 0.24 -0.4 491,276 - HMPREF1058_RS11050 0.25 -1.2 491,276 - HMPREF1058_RS11050 0.25 -0.2 491,322 - HMPREF1058_RS11050 0.30 -0.6 491,336 - HMPREF1058_RS11050 0.32 -0.9 491,519 + HMPREF1058_RS11050 0.55 -0.9 491,634 - HMPREF1058_RS11050 0.69 -0.5 491,634 - HMPREF1058_RS11050 0.69 -0.7 491,634 - HMPREF1058_RS11050 0.69 +0.1 491,652 + HMPREF1058_RS11050 0.71 -1.3 491,652 + HMPREF1058_RS11050 0.71 +0.8 491,653 - HMPREF1058_RS11050 0.71 -1.9 491,721 - HMPREF1058_RS11050 0.80 -2.0 491,788 + HMPREF1058_RS11050 0.88 -0.1 491,810 + -1.0 491,810 + -1.1 491,810 + -0.8 491,811 - -1.4 491,811 - -3.1 491,811 - -0.7 491,829 - -0.7 491,859 + -0.9 491,881 - +0.0 491,885 - -0.1 491,887 + +1.0 491,888 - -0.4 491,892 - -0.6 491,894 - -1.5 491,897 + -0.5 491,944 - -0.3 491,971 + +0.9 492,017 + +0.2
Or see this region's nucleotide sequence