Experiment: Galactan from Potato 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS10820 and HMPREF1058_RS10815 are separated by 164 nucleotides HMPREF1058_RS10815 and HMPREF1058_RS10810 are separated by 6 nucleotides
HMPREF1058_RS10820: HMPREF1058_RS10820 - 4-phosphoerythronate dehydrogenase PdxB, at 554,275 to 555,300
_RS10820
HMPREF1058_RS10815: HMPREF1058_RS10815 - DUF4249 domain-containing protein, at 555,465 to 556,430
_RS10815
HMPREF1058_RS10810: HMPREF1058_RS10810 - TonB-dependent receptor, at 556,437 to 559,091
_RS10810
Position (kb) 555
556
557 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 554.490 kb on + strand, within HMPREF1058_RS10820 at 554.490 kb on + strand, within HMPREF1058_RS10820 at 554.490 kb on + strand, within HMPREF1058_RS10820 at 554.503 kb on + strand, within HMPREF1058_RS10820 at 554.570 kb on - strand, within HMPREF1058_RS10820 at 554.586 kb on - strand, within HMPREF1058_RS10820 at 554.589 kb on - strand, within HMPREF1058_RS10820 at 554.782 kb on - strand, within HMPREF1058_RS10820 at 554.783 kb on + strand, within HMPREF1058_RS10820 at 554.784 kb on - strand, within HMPREF1058_RS10820 at 554.784 kb on - strand, within HMPREF1058_RS10820 at 554.784 kb on - strand, within HMPREF1058_RS10820 at 554.881 kb on - strand, within HMPREF1058_RS10820 at 554.906 kb on + strand, within HMPREF1058_RS10820 at 554.907 kb on - strand, within HMPREF1058_RS10820 at 554.907 kb on - strand, within HMPREF1058_RS10820 at 554.910 kb on - strand, within HMPREF1058_RS10820 at 554.970 kb on + strand, within HMPREF1058_RS10820 at 554.970 kb on + strand, within HMPREF1058_RS10820 at 555.036 kb on + strand, within HMPREF1058_RS10820 at 555.037 kb on - strand, within HMPREF1058_RS10820 at 555.037 kb on - strand, within HMPREF1058_RS10820 at 555.038 kb on + strand, within HMPREF1058_RS10820 at 555.047 kb on - strand, within HMPREF1058_RS10820 at 555.100 kb on - strand, within HMPREF1058_RS10820 at 555.112 kb on - strand, within HMPREF1058_RS10820 at 555.131 kb on + strand, within HMPREF1058_RS10820 at 555.152 kb on - strand, within HMPREF1058_RS10820 at 555.153 kb on + strand, within HMPREF1058_RS10820 at 555.154 kb on - strand, within HMPREF1058_RS10820 at 555.161 kb on - strand, within HMPREF1058_RS10820 at 555.196 kb on + strand, within HMPREF1058_RS10820 at 555.197 kb on - strand, within HMPREF1058_RS10820 at 555.197 kb on - strand, within HMPREF1058_RS10820 at 555.316 kb on + strand at 555.492 kb on + strand at 555.494 kb on + strand at 555.494 kb on + strand at 555.495 kb on - strand at 555.527 kb on + strand at 555.562 kb on - strand, within HMPREF1058_RS10815 at 555.665 kb on - strand, within HMPREF1058_RS10815 at 555.723 kb on + strand, within HMPREF1058_RS10815 at 555.724 kb on - strand, within HMPREF1058_RS10815 at 555.724 kb on - strand, within HMPREF1058_RS10815 at 555.728 kb on + strand, within HMPREF1058_RS10815 at 555.731 kb on - strand, within HMPREF1058_RS10815 at 555.801 kb on - strand, within HMPREF1058_RS10815 at 555.843 kb on + strand, within HMPREF1058_RS10815 at 555.844 kb on - strand, within HMPREF1058_RS10815 at 555.844 kb on - strand, within HMPREF1058_RS10815 at 555.845 kb on + strand, within HMPREF1058_RS10815 at 555.852 kb on + strand, within HMPREF1058_RS10815 at 555.852 kb on + strand, within HMPREF1058_RS10815 at 555.888 kb on + strand, within HMPREF1058_RS10815 at 555.911 kb on - strand, within HMPREF1058_RS10815 at 555.914 kb on - strand, within HMPREF1058_RS10815 at 555.953 kb on - strand, within HMPREF1058_RS10815 at 555.953 kb on - strand, within HMPREF1058_RS10815 at 555.967 kb on + strand, within HMPREF1058_RS10815 at 555.989 kb on - strand, within HMPREF1058_RS10815 at 556.008 kb on - strand, within HMPREF1058_RS10815 at 556.032 kb on - strand, within HMPREF1058_RS10815 at 556.035 kb on + strand, within HMPREF1058_RS10815 at 556.036 kb on - strand, within HMPREF1058_RS10815 at 556.047 kb on + strand, within HMPREF1058_RS10815 at 556.052 kb on + strand, within HMPREF1058_RS10815 at 556.052 kb on + strand, within HMPREF1058_RS10815 at 556.053 kb on - strand, within HMPREF1058_RS10815 at 556.140 kb on + strand, within HMPREF1058_RS10815 at 556.141 kb on - strand, within HMPREF1058_RS10815 at 556.141 kb on - strand, within HMPREF1058_RS10815 at 556.141 kb on - strand, within HMPREF1058_RS10815 at 556.141 kb on - strand, within HMPREF1058_RS10815 at 556.172 kb on + strand, within HMPREF1058_RS10815 at 556.173 kb on - strand, within HMPREF1058_RS10815 at 556.219 kb on + strand, within HMPREF1058_RS10815 at 556.220 kb on - strand, within HMPREF1058_RS10815 at 556.252 kb on + strand, within HMPREF1058_RS10815 at 556.320 kb on + strand, within HMPREF1058_RS10815 at 556.320 kb on + strand, within HMPREF1058_RS10815 at 556.320 kb on + strand at 556.321 kb on - strand, within HMPREF1058_RS10815 at 556.321 kb on - strand, within HMPREF1058_RS10815 at 556.330 kb on - strand, within HMPREF1058_RS10815 at 556.407 kb on + strand at 556.408 kb on - strand at 556.408 kb on - strand at 556.408 kb on - strand at 556.412 kb on + strand at 556.412 kb on + strand at 556.412 kb on + strand at 556.412 kb on + strand at 556.413 kb on + strand at 556.413 kb on - strand at 556.413 kb on - strand at 556.413 kb on - strand at 556.467 kb on + strand at 556.467 kb on + strand at 556.468 kb on - strand at 556.479 kb on + strand at 556.479 kb on + strand at 556.493 kb on - strand at 556.508 kb on + strand at 556.509 kb on - strand at 556.509 kb on - strand at 556.511 kb on - strand at 556.527 kb on + strand at 556.547 kb on - strand at 556.552 kb on + strand at 556.553 kb on - strand at 556.561 kb on + strand at 556.561 kb on + strand at 556.562 kb on - strand at 556.639 kb on + strand at 556.661 kb on + strand at 556.695 kb on + strand at 556.695 kb on + strand at 556.700 kb on - strand at 556.895 kb on + strand, within HMPREF1058_RS10810 at 556.929 kb on + strand, within HMPREF1058_RS10810 at 556.986 kb on + strand, within HMPREF1058_RS10810 at 556.987 kb on - strand, within HMPREF1058_RS10810 at 557.094 kb on - strand, within HMPREF1058_RS10810 at 557.094 kb on - strand, within HMPREF1058_RS10810 at 557.099 kb on - strand, within HMPREF1058_RS10810 at 557.152 kb on - strand, within HMPREF1058_RS10810 at 557.227 kb on + strand, within HMPREF1058_RS10810 at 557.248 kb on - strand, within HMPREF1058_RS10810 at 557.251 kb on + strand, within HMPREF1058_RS10810 at 557.269 kb on + strand, within HMPREF1058_RS10810 at 557.338 kb on + strand, within HMPREF1058_RS10810 at 557.339 kb on - strand, within HMPREF1058_RS10810 at 557.361 kb on + strand, within HMPREF1058_RS10810 at 557.361 kb on + strand, within HMPREF1058_RS10810 at 557.362 kb on - strand, within HMPREF1058_RS10810 at 557.423 kb on + strand, within HMPREF1058_RS10810 at 557.425 kb on + strand, within HMPREF1058_RS10810 at 557.425 kb on + strand, within HMPREF1058_RS10810 at 557.425 kb on + strand, within HMPREF1058_RS10810 at 557.425 kb on + strand, within HMPREF1058_RS10810 at 557.426 kb on - strand, within HMPREF1058_RS10810 at 557.426 kb on - strand, within HMPREF1058_RS10810 at 557.426 kb on - strand, within HMPREF1058_RS10810 at 557.427 kb on + strand, within HMPREF1058_RS10810 at 557.427 kb on + strand, within HMPREF1058_RS10810
Per-strain Table
Position Strand Gene LocusTag Fraction Galactan from Potato 2.5 mg/ml (C) remove 554,490 + HMPREF1058_RS10820 0.21 -2.6 554,490 + HMPREF1058_RS10820 0.21 -3.1 554,490 + HMPREF1058_RS10820 0.21 -2.6 554,503 + HMPREF1058_RS10820 0.22 -1.6 554,570 - HMPREF1058_RS10820 0.29 -2.4 554,586 - HMPREF1058_RS10820 0.30 -2.1 554,589 - HMPREF1058_RS10820 0.31 -3.4 554,782 - HMPREF1058_RS10820 0.49 +0.1 554,783 + HMPREF1058_RS10820 0.50 -0.5 554,784 - HMPREF1058_RS10820 0.50 -3.0 554,784 - HMPREF1058_RS10820 0.50 -1.5 554,784 - HMPREF1058_RS10820 0.50 -1.9 554,881 - HMPREF1058_RS10820 0.59 -1.7 554,906 + HMPREF1058_RS10820 0.62 -2.1 554,907 - HMPREF1058_RS10820 0.62 +1.2 554,907 - HMPREF1058_RS10820 0.62 -1.0 554,910 - HMPREF1058_RS10820 0.62 -2.4 554,970 + HMPREF1058_RS10820 0.68 -1.7 554,970 + HMPREF1058_RS10820 0.68 -1.5 555,036 + HMPREF1058_RS10820 0.74 -2.0 555,037 - HMPREF1058_RS10820 0.74 -2.1 555,037 - HMPREF1058_RS10820 0.74 -1.2 555,038 + HMPREF1058_RS10820 0.74 -1.4 555,047 - HMPREF1058_RS10820 0.75 -0.1 555,100 - HMPREF1058_RS10820 0.80 -2.2 555,112 - HMPREF1058_RS10820 0.82 -1.9 555,131 + HMPREF1058_RS10820 0.83 -1.9 555,152 - HMPREF1058_RS10820 0.85 -1.6 555,153 + HMPREF1058_RS10820 0.86 -1.5 555,154 - HMPREF1058_RS10820 0.86 -2.1 555,161 - HMPREF1058_RS10820 0.86 -0.0 555,196 + HMPREF1058_RS10820 0.90 -2.1 555,197 - HMPREF1058_RS10820 0.90 -1.8 555,197 - HMPREF1058_RS10820 0.90 -1.0 555,316 + -1.6 555,492 + -0.7 555,494 + -1.4 555,494 + -2.0 555,495 - +2.2 555,527 + +2.1 555,562 - HMPREF1058_RS10815 0.10 +2.9 555,665 - HMPREF1058_RS10815 0.21 +1.8 555,723 + HMPREF1058_RS10815 0.27 +0.1 555,724 - HMPREF1058_RS10815 0.27 +2.6 555,724 - HMPREF1058_RS10815 0.27 +2.2 555,728 + HMPREF1058_RS10815 0.27 -1.2 555,731 - HMPREF1058_RS10815 0.28 +2.4 555,801 - HMPREF1058_RS10815 0.35 +1.9 555,843 + HMPREF1058_RS10815 0.39 -0.4 555,844 - HMPREF1058_RS10815 0.39 +2.1 555,844 - HMPREF1058_RS10815 0.39 +2.9 555,845 + HMPREF1058_RS10815 0.39 -1.5 555,852 + HMPREF1058_RS10815 0.40 +0.3 555,852 + HMPREF1058_RS10815 0.40 -1.9 555,888 + HMPREF1058_RS10815 0.44 -0.6 555,911 - HMPREF1058_RS10815 0.46 +1.8 555,914 - HMPREF1058_RS10815 0.46 +1.8 555,953 - HMPREF1058_RS10815 0.51 +1.4 555,953 - HMPREF1058_RS10815 0.51 +2.2 555,967 + HMPREF1058_RS10815 0.52 -0.8 555,989 - HMPREF1058_RS10815 0.54 +1.6 556,008 - HMPREF1058_RS10815 0.56 +0.9 556,032 - HMPREF1058_RS10815 0.59 +0.9 556,035 + HMPREF1058_RS10815 0.59 -0.9 556,036 - HMPREF1058_RS10815 0.59 +0.9 556,047 + HMPREF1058_RS10815 0.60 -0.6 556,052 + HMPREF1058_RS10815 0.61 -0.2 556,052 + HMPREF1058_RS10815 0.61 -1.4 556,053 - HMPREF1058_RS10815 0.61 +1.4 556,140 + HMPREF1058_RS10815 0.70 -1.5 556,141 - HMPREF1058_RS10815 0.70 +0.9 556,141 - HMPREF1058_RS10815 0.70 +0.1 556,141 - HMPREF1058_RS10815 0.70 +0.1 556,141 - HMPREF1058_RS10815 0.70 +1.8 556,172 + HMPREF1058_RS10815 0.73 -0.7 556,173 - HMPREF1058_RS10815 0.73 +1.9 556,219 + HMPREF1058_RS10815 0.78 -0.5 556,220 - HMPREF1058_RS10815 0.78 +1.6 556,252 + HMPREF1058_RS10815 0.81 +1.9 556,320 + HMPREF1058_RS10815 0.89 +0.7 556,320 + HMPREF1058_RS10815 0.89 +0.1 556,320 + -0.8 556,321 - HMPREF1058_RS10815 0.89 +2.6 556,321 - HMPREF1058_RS10815 0.89 +1.3 556,330 - HMPREF1058_RS10815 0.90 +1.3 556,407 + +0.0 556,408 - +1.1 556,408 - +1.1 556,408 - +1.9 556,412 + -0.4 556,412 + -0.2 556,412 + -0.5 556,412 + -0.1 556,413 + -0.5 556,413 - +0.0 556,413 - +1.3 556,413 - +1.9 556,467 + -0.0 556,467 + -1.6 556,468 - +1.3 556,479 + -3.3 556,479 + -0.5 556,493 - +1.3 556,508 + -1.0 556,509 - +1.9 556,509 - +2.8 556,511 - +3.1 556,527 + +0.0 556,547 - +4.4 556,552 + -0.6 556,553 - +2.5 556,561 + -0.6 556,561 + -0.1 556,562 - +1.7 556,639 + -3.2 556,661 + -1.6 556,695 + -0.6 556,695 + -1.4 556,700 - +1.7 556,895 + HMPREF1058_RS10810 0.17 +0.2 556,929 + HMPREF1058_RS10810 0.19 -1.2 556,986 + HMPREF1058_RS10810 0.21 +0.3 556,987 - HMPREF1058_RS10810 0.21 +1.9 557,094 - HMPREF1058_RS10810 0.25 +0.8 557,094 - HMPREF1058_RS10810 0.25 +2.3 557,099 - HMPREF1058_RS10810 0.25 +2.1 557,152 - HMPREF1058_RS10810 0.27 +2.8 557,227 + HMPREF1058_RS10810 0.30 -1.4 557,248 - HMPREF1058_RS10810 0.31 +2.5 557,251 + HMPREF1058_RS10810 0.31 -1.6 557,269 + HMPREF1058_RS10810 0.31 -1.7 557,338 + HMPREF1058_RS10810 0.34 +0.0 557,339 - HMPREF1058_RS10810 0.34 +2.3 557,361 + HMPREF1058_RS10810 0.35 -1.4 557,361 + HMPREF1058_RS10810 0.35 -1.0 557,362 - HMPREF1058_RS10810 0.35 +2.5 557,423 + HMPREF1058_RS10810 0.37 -0.3 557,425 + HMPREF1058_RS10810 0.37 -0.8 557,425 + HMPREF1058_RS10810 0.37 -0.5 557,425 + HMPREF1058_RS10810 0.37 -0.6 557,425 + HMPREF1058_RS10810 0.37 -0.9 557,426 - HMPREF1058_RS10810 0.37 +3.3 557,426 - HMPREF1058_RS10810 0.37 +2.2 557,426 - HMPREF1058_RS10810 0.37 +1.0 557,427 + HMPREF1058_RS10810 0.37 +1.1 557,427 + HMPREF1058_RS10810 0.37 -1.8
Or see this region's nucleotide sequence