Experiment: Galactan from Potato 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS10815 and HMPREF1058_RS10810 are separated by 6 nucleotides HMPREF1058_RS10810 and HMPREF1058_RS10805 overlap by 4 nucleotides HMPREF1058_RS10805 and HMPREF1058_RS10800 are separated by 69 nucleotides
HMPREF1058_RS10815: HMPREF1058_RS10815 - DUF4249 domain-containing protein, at 555,465 to 556,430
_RS10815
HMPREF1058_RS10810: HMPREF1058_RS10810 - TonB-dependent receptor, at 556,437 to 559,091
_RS10810
HMPREF1058_RS10805: HMPREF1058_RS10805 - FecR family protein, at 559,088 to 559,891
_RS10805
HMPREF1058_RS10800: HMPREF1058_RS10800 - RNA polymerase sigma-70 factor, at 559,961 to 560,470
_RS10800
Position (kb) 556
557
558
559
560 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 555.492 kb on + strand at 555.494 kb on + strand at 555.494 kb on + strand at 555.495 kb on - strand at 555.527 kb on + strand at 555.562 kb on - strand, within HMPREF1058_RS10815 at 555.665 kb on - strand, within HMPREF1058_RS10815 at 555.723 kb on + strand, within HMPREF1058_RS10815 at 555.724 kb on - strand, within HMPREF1058_RS10815 at 555.724 kb on - strand, within HMPREF1058_RS10815 at 555.728 kb on + strand, within HMPREF1058_RS10815 at 555.731 kb on - strand, within HMPREF1058_RS10815 at 555.801 kb on - strand, within HMPREF1058_RS10815 at 555.843 kb on + strand, within HMPREF1058_RS10815 at 555.844 kb on - strand, within HMPREF1058_RS10815 at 555.844 kb on - strand, within HMPREF1058_RS10815 at 555.845 kb on + strand, within HMPREF1058_RS10815 at 555.852 kb on + strand, within HMPREF1058_RS10815 at 555.852 kb on + strand, within HMPREF1058_RS10815 at 555.888 kb on + strand, within HMPREF1058_RS10815 at 555.911 kb on - strand, within HMPREF1058_RS10815 at 555.914 kb on - strand, within HMPREF1058_RS10815 at 555.953 kb on - strand, within HMPREF1058_RS10815 at 555.953 kb on - strand, within HMPREF1058_RS10815 at 555.967 kb on + strand, within HMPREF1058_RS10815 at 555.989 kb on - strand, within HMPREF1058_RS10815 at 556.008 kb on - strand, within HMPREF1058_RS10815 at 556.032 kb on - strand, within HMPREF1058_RS10815 at 556.035 kb on + strand, within HMPREF1058_RS10815 at 556.036 kb on - strand, within HMPREF1058_RS10815 at 556.047 kb on + strand, within HMPREF1058_RS10815 at 556.052 kb on + strand, within HMPREF1058_RS10815 at 556.052 kb on + strand, within HMPREF1058_RS10815 at 556.053 kb on - strand, within HMPREF1058_RS10815 at 556.140 kb on + strand, within HMPREF1058_RS10815 at 556.141 kb on - strand, within HMPREF1058_RS10815 at 556.141 kb on - strand, within HMPREF1058_RS10815 at 556.141 kb on - strand, within HMPREF1058_RS10815 at 556.141 kb on - strand, within HMPREF1058_RS10815 at 556.172 kb on + strand, within HMPREF1058_RS10815 at 556.173 kb on - strand, within HMPREF1058_RS10815 at 556.219 kb on + strand, within HMPREF1058_RS10815 at 556.220 kb on - strand, within HMPREF1058_RS10815 at 556.252 kb on + strand, within HMPREF1058_RS10815 at 556.320 kb on + strand, within HMPREF1058_RS10815 at 556.320 kb on + strand, within HMPREF1058_RS10815 at 556.320 kb on + strand at 556.321 kb on - strand, within HMPREF1058_RS10815 at 556.321 kb on - strand, within HMPREF1058_RS10815 at 556.330 kb on - strand, within HMPREF1058_RS10815 at 556.407 kb on + strand at 556.408 kb on - strand at 556.408 kb on - strand at 556.408 kb on - strand at 556.412 kb on + strand at 556.412 kb on + strand at 556.412 kb on + strand at 556.412 kb on + strand at 556.413 kb on + strand at 556.413 kb on - strand at 556.413 kb on - strand at 556.413 kb on - strand at 556.467 kb on + strand at 556.467 kb on + strand at 556.468 kb on - strand at 556.479 kb on + strand at 556.479 kb on + strand at 556.493 kb on - strand at 556.508 kb on + strand at 556.509 kb on - strand at 556.509 kb on - strand at 556.511 kb on - strand at 556.527 kb on + strand at 556.547 kb on - strand at 556.552 kb on + strand at 556.553 kb on - strand at 556.561 kb on + strand at 556.561 kb on + strand at 556.562 kb on - strand at 556.639 kb on + strand at 556.661 kb on + strand at 556.695 kb on + strand at 556.695 kb on + strand at 556.700 kb on - strand at 556.895 kb on + strand, within HMPREF1058_RS10810 at 556.929 kb on + strand, within HMPREF1058_RS10810 at 556.986 kb on + strand, within HMPREF1058_RS10810 at 556.987 kb on - strand, within HMPREF1058_RS10810 at 557.094 kb on - strand, within HMPREF1058_RS10810 at 557.094 kb on - strand, within HMPREF1058_RS10810 at 557.099 kb on - strand, within HMPREF1058_RS10810 at 557.152 kb on - strand, within HMPREF1058_RS10810 at 557.227 kb on + strand, within HMPREF1058_RS10810 at 557.248 kb on - strand, within HMPREF1058_RS10810 at 557.251 kb on + strand, within HMPREF1058_RS10810 at 557.269 kb on + strand, within HMPREF1058_RS10810 at 557.338 kb on + strand, within HMPREF1058_RS10810 at 557.339 kb on - strand, within HMPREF1058_RS10810 at 557.361 kb on + strand, within HMPREF1058_RS10810 at 557.361 kb on + strand, within HMPREF1058_RS10810 at 557.362 kb on - strand, within HMPREF1058_RS10810 at 557.423 kb on + strand, within HMPREF1058_RS10810 at 557.425 kb on + strand, within HMPREF1058_RS10810 at 557.425 kb on + strand, within HMPREF1058_RS10810 at 557.425 kb on + strand, within HMPREF1058_RS10810 at 557.425 kb on + strand, within HMPREF1058_RS10810 at 557.426 kb on - strand, within HMPREF1058_RS10810 at 557.426 kb on - strand, within HMPREF1058_RS10810 at 557.426 kb on - strand, within HMPREF1058_RS10810 at 557.427 kb on + strand, within HMPREF1058_RS10810 at 557.427 kb on + strand, within HMPREF1058_RS10810 at 557.538 kb on - strand, within HMPREF1058_RS10810 at 557.538 kb on - strand, within HMPREF1058_RS10810 at 557.647 kb on + strand, within HMPREF1058_RS10810 at 557.648 kb on - strand, within HMPREF1058_RS10810 at 557.648 kb on - strand, within HMPREF1058_RS10810 at 557.672 kb on - strand, within HMPREF1058_RS10810 at 558.328 kb on + strand, within HMPREF1058_RS10810 at 558.328 kb on + strand, within HMPREF1058_RS10810 at 558.449 kb on + strand, within HMPREF1058_RS10810 at 558.450 kb on - strand, within HMPREF1058_RS10810 at 558.488 kb on + strand, within HMPREF1058_RS10810 at 558.489 kb on - strand, within HMPREF1058_RS10810 at 558.491 kb on - strand, within HMPREF1058_RS10810 at 558.600 kb on + strand, within HMPREF1058_RS10810 at 558.604 kb on + strand, within HMPREF1058_RS10810 at 558.621 kb on + strand, within HMPREF1058_RS10810 at 558.621 kb on + strand, within HMPREF1058_RS10810 at 558.622 kb on - strand, within HMPREF1058_RS10810 at 558.700 kb on + strand, within HMPREF1058_RS10810 at 558.716 kb on + strand, within HMPREF1058_RS10810 at 558.759 kb on + strand, within HMPREF1058_RS10810 at 558.759 kb on + strand, within HMPREF1058_RS10810 at 558.794 kb on - strand, within HMPREF1058_RS10810 at 558.794 kb on - strand, within HMPREF1058_RS10810 at 558.877 kb on - strand at 558.878 kb on + strand at 558.879 kb on - strand at 558.928 kb on - strand at 558.987 kb on + strand at 558.987 kb on + strand at 558.988 kb on - strand at 558.988 kb on - strand at 559.031 kb on + strand at 559.115 kb on + strand at 559.116 kb on - strand at 559.116 kb on - strand at 559.128 kb on - strand at 559.139 kb on + strand at 559.183 kb on - strand, within HMPREF1058_RS10805 at 559.217 kb on - strand, within HMPREF1058_RS10805 at 559.217 kb on - strand, within HMPREF1058_RS10805 at 559.217 kb on - strand, within HMPREF1058_RS10805 at 559.218 kb on + strand, within HMPREF1058_RS10805 at 559.219 kb on - strand, within HMPREF1058_RS10805 at 559.219 kb on - strand, within HMPREF1058_RS10805 at 559.353 kb on + strand, within HMPREF1058_RS10805 at 559.353 kb on + strand, within HMPREF1058_RS10805 at 559.353 kb on + strand, within HMPREF1058_RS10805 at 559.354 kb on - strand, within HMPREF1058_RS10805 at 559.419 kb on - strand, within HMPREF1058_RS10805 at 559.472 kb on + strand, within HMPREF1058_RS10805 at 559.479 kb on - strand, within HMPREF1058_RS10805 at 559.581 kb on + strand, within HMPREF1058_RS10805 at 559.704 kb on + strand, within HMPREF1058_RS10805 at 559.705 kb on - strand, within HMPREF1058_RS10805 at 559.765 kb on + strand, within HMPREF1058_RS10805 at 559.766 kb on - strand, within HMPREF1058_RS10805 at 559.767 kb on + strand, within HMPREF1058_RS10805 at 559.767 kb on + strand, within HMPREF1058_RS10805 at 559.767 kb on + strand, within HMPREF1058_RS10805 at 559.767 kb on + strand, within HMPREF1058_RS10805 at 559.768 kb on - strand, within HMPREF1058_RS10805 at 559.770 kb on - strand, within HMPREF1058_RS10805 at 559.770 kb on - strand, within HMPREF1058_RS10805 at 559.773 kb on - strand, within HMPREF1058_RS10805 at 559.773 kb on - strand, within HMPREF1058_RS10805 at 559.778 kb on - strand at 559.778 kb on - strand, within HMPREF1058_RS10805 at 559.916 kb on - strand at 559.982 kb on + strand at 560.080 kb on - strand, within HMPREF1058_RS10800 at 560.083 kb on + strand, within HMPREF1058_RS10800 at 560.083 kb on + strand, within HMPREF1058_RS10800
Per-strain Table
Position Strand Gene LocusTag Fraction Galactan from Potato 2.5 mg/ml (C) remove 555,492 + -0.7 555,494 + -1.4 555,494 + -2.0 555,495 - +2.2 555,527 + +2.1 555,562 - HMPREF1058_RS10815 0.10 +2.9 555,665 - HMPREF1058_RS10815 0.21 +1.8 555,723 + HMPREF1058_RS10815 0.27 +0.1 555,724 - HMPREF1058_RS10815 0.27 +2.6 555,724 - HMPREF1058_RS10815 0.27 +2.2 555,728 + HMPREF1058_RS10815 0.27 -1.2 555,731 - HMPREF1058_RS10815 0.28 +2.4 555,801 - HMPREF1058_RS10815 0.35 +1.9 555,843 + HMPREF1058_RS10815 0.39 -0.4 555,844 - HMPREF1058_RS10815 0.39 +2.1 555,844 - HMPREF1058_RS10815 0.39 +2.9 555,845 + HMPREF1058_RS10815 0.39 -1.5 555,852 + HMPREF1058_RS10815 0.40 +0.3 555,852 + HMPREF1058_RS10815 0.40 -1.9 555,888 + HMPREF1058_RS10815 0.44 -0.6 555,911 - HMPREF1058_RS10815 0.46 +1.8 555,914 - HMPREF1058_RS10815 0.46 +1.8 555,953 - HMPREF1058_RS10815 0.51 +1.4 555,953 - HMPREF1058_RS10815 0.51 +2.2 555,967 + HMPREF1058_RS10815 0.52 -0.8 555,989 - HMPREF1058_RS10815 0.54 +1.6 556,008 - HMPREF1058_RS10815 0.56 +0.9 556,032 - HMPREF1058_RS10815 0.59 +0.9 556,035 + HMPREF1058_RS10815 0.59 -0.9 556,036 - HMPREF1058_RS10815 0.59 +0.9 556,047 + HMPREF1058_RS10815 0.60 -0.6 556,052 + HMPREF1058_RS10815 0.61 -0.2 556,052 + HMPREF1058_RS10815 0.61 -1.4 556,053 - HMPREF1058_RS10815 0.61 +1.4 556,140 + HMPREF1058_RS10815 0.70 -1.5 556,141 - HMPREF1058_RS10815 0.70 +0.9 556,141 - HMPREF1058_RS10815 0.70 +0.1 556,141 - HMPREF1058_RS10815 0.70 +0.1 556,141 - HMPREF1058_RS10815 0.70 +1.8 556,172 + HMPREF1058_RS10815 0.73 -0.7 556,173 - HMPREF1058_RS10815 0.73 +1.9 556,219 + HMPREF1058_RS10815 0.78 -0.5 556,220 - HMPREF1058_RS10815 0.78 +1.6 556,252 + HMPREF1058_RS10815 0.81 +1.9 556,320 + HMPREF1058_RS10815 0.89 +0.7 556,320 + HMPREF1058_RS10815 0.89 +0.1 556,320 + -0.8 556,321 - HMPREF1058_RS10815 0.89 +2.6 556,321 - HMPREF1058_RS10815 0.89 +1.3 556,330 - HMPREF1058_RS10815 0.90 +1.3 556,407 + +0.0 556,408 - +1.1 556,408 - +1.1 556,408 - +1.9 556,412 + -0.4 556,412 + -0.2 556,412 + -0.5 556,412 + -0.1 556,413 + -0.5 556,413 - +0.0 556,413 - +1.3 556,413 - +1.9 556,467 + -0.0 556,467 + -1.6 556,468 - +1.3 556,479 + -3.3 556,479 + -0.5 556,493 - +1.3 556,508 + -1.0 556,509 - +1.9 556,509 - +2.8 556,511 - +3.1 556,527 + +0.0 556,547 - +4.4 556,552 + -0.6 556,553 - +2.5 556,561 + -0.6 556,561 + -0.1 556,562 - +1.7 556,639 + -3.2 556,661 + -1.6 556,695 + -0.6 556,695 + -1.4 556,700 - +1.7 556,895 + HMPREF1058_RS10810 0.17 +0.2 556,929 + HMPREF1058_RS10810 0.19 -1.2 556,986 + HMPREF1058_RS10810 0.21 +0.3 556,987 - HMPREF1058_RS10810 0.21 +1.9 557,094 - HMPREF1058_RS10810 0.25 +0.8 557,094 - HMPREF1058_RS10810 0.25 +2.3 557,099 - HMPREF1058_RS10810 0.25 +2.1 557,152 - HMPREF1058_RS10810 0.27 +2.8 557,227 + HMPREF1058_RS10810 0.30 -1.4 557,248 - HMPREF1058_RS10810 0.31 +2.5 557,251 + HMPREF1058_RS10810 0.31 -1.6 557,269 + HMPREF1058_RS10810 0.31 -1.7 557,338 + HMPREF1058_RS10810 0.34 +0.0 557,339 - HMPREF1058_RS10810 0.34 +2.3 557,361 + HMPREF1058_RS10810 0.35 -1.4 557,361 + HMPREF1058_RS10810 0.35 -1.0 557,362 - HMPREF1058_RS10810 0.35 +2.5 557,423 + HMPREF1058_RS10810 0.37 -0.3 557,425 + HMPREF1058_RS10810 0.37 -0.8 557,425 + HMPREF1058_RS10810 0.37 -0.5 557,425 + HMPREF1058_RS10810 0.37 -0.6 557,425 + HMPREF1058_RS10810 0.37 -0.9 557,426 - HMPREF1058_RS10810 0.37 +3.3 557,426 - HMPREF1058_RS10810 0.37 +2.2 557,426 - HMPREF1058_RS10810 0.37 +1.0 557,427 + HMPREF1058_RS10810 0.37 +1.1 557,427 + HMPREF1058_RS10810 0.37 -1.8 557,538 - HMPREF1058_RS10810 0.41 +3.0 557,538 - HMPREF1058_RS10810 0.41 +2.9 557,647 + HMPREF1058_RS10810 0.46 -1.1 557,648 - HMPREF1058_RS10810 0.46 +1.9 557,648 - HMPREF1058_RS10810 0.46 +1.7 557,672 - HMPREF1058_RS10810 0.47 +1.7 558,328 + HMPREF1058_RS10810 0.71 -0.4 558,328 + HMPREF1058_RS10810 0.71 +0.6 558,449 + HMPREF1058_RS10810 0.76 -0.8 558,450 - HMPREF1058_RS10810 0.76 +0.3 558,488 + HMPREF1058_RS10810 0.77 -0.0 558,489 - HMPREF1058_RS10810 0.77 -0.1 558,491 - HMPREF1058_RS10810 0.77 +2.0 558,600 + HMPREF1058_RS10810 0.81 +0.2 558,604 + HMPREF1058_RS10810 0.82 -0.3 558,621 + HMPREF1058_RS10810 0.82 +1.8 558,621 + HMPREF1058_RS10810 0.82 +1.3 558,622 - HMPREF1058_RS10810 0.82 +0.4 558,700 + HMPREF1058_RS10810 0.85 -0.3 558,716 + HMPREF1058_RS10810 0.86 +0.9 558,759 + HMPREF1058_RS10810 0.87 -0.0 558,759 + HMPREF1058_RS10810 0.87 -1.6 558,794 - HMPREF1058_RS10810 0.89 -0.2 558,794 - HMPREF1058_RS10810 0.89 -0.3 558,877 - -1.7 558,878 + -0.1 558,879 - -0.4 558,928 - +0.5 558,987 + -0.9 558,987 + +0.5 558,988 - +0.5 558,988 - -2.1 559,031 + -1.3 559,115 + -1.0 559,116 - +2.1 559,116 - +0.2 559,128 - +2.7 559,139 + -2.3 559,183 - HMPREF1058_RS10805 0.12 +2.6 559,217 - HMPREF1058_RS10805 0.16 +2.2 559,217 - HMPREF1058_RS10805 0.16 +1.6 559,217 - HMPREF1058_RS10805 0.16 +1.5 559,218 + HMPREF1058_RS10805 0.16 -0.8 559,219 - HMPREF1058_RS10805 0.16 +1.0 559,219 - HMPREF1058_RS10805 0.16 -0.6 559,353 + HMPREF1058_RS10805 0.33 +0.9 559,353 + HMPREF1058_RS10805 0.33 -1.1 559,353 + HMPREF1058_RS10805 0.33 -0.5 559,354 - HMPREF1058_RS10805 0.33 +1.0 559,419 - HMPREF1058_RS10805 0.41 +0.8 559,472 + HMPREF1058_RS10805 0.48 +0.7 559,479 - HMPREF1058_RS10805 0.49 +0.9 559,581 + HMPREF1058_RS10805 0.61 +0.2 559,704 + HMPREF1058_RS10805 0.77 -0.5 559,705 - HMPREF1058_RS10805 0.77 +0.5 559,765 + HMPREF1058_RS10805 0.84 +0.0 559,766 - HMPREF1058_RS10805 0.84 +2.2 559,767 + HMPREF1058_RS10805 0.84 -1.1 559,767 + HMPREF1058_RS10805 0.84 -0.1 559,767 + HMPREF1058_RS10805 0.84 -1.9 559,767 + HMPREF1058_RS10805 0.84 -1.0 559,768 - HMPREF1058_RS10805 0.85 +0.3 559,770 - HMPREF1058_RS10805 0.85 +2.2 559,770 - HMPREF1058_RS10805 0.85 +1.0 559,773 - HMPREF1058_RS10805 0.85 +1.1 559,773 - HMPREF1058_RS10805 0.85 +1.5 559,778 - +0.4 559,778 - HMPREF1058_RS10805 0.86 +1.1 559,916 - +2.8 559,982 + -0.4 560,080 - HMPREF1058_RS10800 0.23 +0.1 560,083 + HMPREF1058_RS10800 0.24 +0.4 560,083 + HMPREF1058_RS10800 0.24 +0.6
Or see this region's nucleotide sequence