Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS10805

Experiment: Galactan from Potato 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS10810 and HMPREF1058_RS10805 overlap by 4 nucleotidesHMPREF1058_RS10805 and HMPREF1058_RS10800 are separated by 69 nucleotidesHMPREF1058_RS10800 and HMPREF1058_RS10795 are separated by 245 nucleotides HMPREF1058_RS10810: HMPREF1058_RS10810 - TonB-dependent receptor, at 556,437 to 559,091 _RS10810 HMPREF1058_RS10805: HMPREF1058_RS10805 - FecR family protein, at 559,088 to 559,891 _RS10805 HMPREF1058_RS10800: HMPREF1058_RS10800 - RNA polymerase sigma-70 factor, at 559,961 to 560,470 _RS10800 HMPREF1058_RS10795: HMPREF1058_RS10795 - SusD/RagB family nutrient-binding outer membrane lipoprotein, at 560,716 to 562,419 _RS10795 Position (kb) 559 560Strain fitness (log2 ratio) -2 -1 0 1 2 3at 558.328 kb on + strand, within HMPREF1058_RS10810at 558.328 kb on + strand, within HMPREF1058_RS10810at 558.449 kb on + strand, within HMPREF1058_RS10810at 558.450 kb on - strand, within HMPREF1058_RS10810at 558.488 kb on + strand, within HMPREF1058_RS10810at 558.489 kb on - strand, within HMPREF1058_RS10810at 558.491 kb on - strand, within HMPREF1058_RS10810at 558.600 kb on + strand, within HMPREF1058_RS10810at 558.604 kb on + strand, within HMPREF1058_RS10810at 558.621 kb on + strand, within HMPREF1058_RS10810at 558.621 kb on + strand, within HMPREF1058_RS10810at 558.622 kb on - strand, within HMPREF1058_RS10810at 558.700 kb on + strand, within HMPREF1058_RS10810at 558.716 kb on + strand, within HMPREF1058_RS10810at 558.759 kb on + strand, within HMPREF1058_RS10810at 558.759 kb on + strand, within HMPREF1058_RS10810at 558.794 kb on - strand, within HMPREF1058_RS10810at 558.794 kb on - strand, within HMPREF1058_RS10810at 558.877 kb on - strandat 558.878 kb on + strandat 558.879 kb on - strandat 558.928 kb on - strandat 558.987 kb on + strandat 558.987 kb on + strandat 558.988 kb on - strandat 558.988 kb on - strandat 559.031 kb on + strandat 559.115 kb on + strandat 559.116 kb on - strandat 559.116 kb on - strandat 559.128 kb on - strandat 559.139 kb on + strandat 559.183 kb on - strand, within HMPREF1058_RS10805at 559.217 kb on - strand, within HMPREF1058_RS10805at 559.217 kb on - strand, within HMPREF1058_RS10805at 559.217 kb on - strand, within HMPREF1058_RS10805at 559.218 kb on + strand, within HMPREF1058_RS10805at 559.219 kb on - strand, within HMPREF1058_RS10805at 559.219 kb on - strand, within HMPREF1058_RS10805at 559.353 kb on + strand, within HMPREF1058_RS10805at 559.353 kb on + strand, within HMPREF1058_RS10805at 559.353 kb on + strand, within HMPREF1058_RS10805at 559.354 kb on - strand, within HMPREF1058_RS10805at 559.419 kb on - strand, within HMPREF1058_RS10805at 559.472 kb on + strand, within HMPREF1058_RS10805at 559.479 kb on - strand, within HMPREF1058_RS10805at 559.581 kb on + strand, within HMPREF1058_RS10805at 559.704 kb on + strand, within HMPREF1058_RS10805at 559.705 kb on - strand, within HMPREF1058_RS10805at 559.765 kb on + strand, within HMPREF1058_RS10805at 559.766 kb on - strand, within HMPREF1058_RS10805at 559.767 kb on + strand, within HMPREF1058_RS10805at 559.767 kb on + strand, within HMPREF1058_RS10805at 559.767 kb on + strand, within HMPREF1058_RS10805at 559.767 kb on + strand, within HMPREF1058_RS10805at 559.768 kb on - strand, within HMPREF1058_RS10805at 559.770 kb on - strand, within HMPREF1058_RS10805at 559.770 kb on - strand, within HMPREF1058_RS10805at 559.773 kb on - strand, within HMPREF1058_RS10805at 559.773 kb on - strand, within HMPREF1058_RS10805at 559.778 kb on - strandat 559.778 kb on - strand, within HMPREF1058_RS10805at 559.916 kb on - strandat 559.982 kb on + strandat 560.080 kb on - strand, within HMPREF1058_RS10800at 560.083 kb on + strand, within HMPREF1058_RS10800at 560.083 kb on + strand, within HMPREF1058_RS10800at 560.276 kb on + strand, within HMPREF1058_RS10800at 560.277 kb on - strand, within HMPREF1058_RS10800at 560.290 kb on + strand, within HMPREF1058_RS10800at 560.291 kb on - strand, within HMPREF1058_RS10800at 560.311 kb on + strand, within HMPREF1058_RS10800at 560.312 kb on - strand, within HMPREF1058_RS10800at 560.393 kb on - strand, within HMPREF1058_RS10800at 560.406 kb on + strand, within HMPREF1058_RS10800at 560.407 kb on - strand, within HMPREF1058_RS10800at 560.407 kb on - strand, within HMPREF1058_RS10800at 560.462 kb on + strandat 560.463 kb on - strandat 560.664 kb on - strandat 560.674 kb on + strandat 560.674 kb on + strandat 560.718 kb on - strandat 560.849 kb on + strandat 560.850 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Galactan from Potato 2.5 mg/ml (C)
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558,328 + HMPREF1058_RS10810 0.71 -0.4
558,328 + HMPREF1058_RS10810 0.71 +0.6
558,449 + HMPREF1058_RS10810 0.76 -0.8
558,450 - HMPREF1058_RS10810 0.76 +0.3
558,488 + HMPREF1058_RS10810 0.77 -0.0
558,489 - HMPREF1058_RS10810 0.77 -0.1
558,491 - HMPREF1058_RS10810 0.77 +2.0
558,600 + HMPREF1058_RS10810 0.81 +0.2
558,604 + HMPREF1058_RS10810 0.82 -0.3
558,621 + HMPREF1058_RS10810 0.82 +1.8
558,621 + HMPREF1058_RS10810 0.82 +1.3
558,622 - HMPREF1058_RS10810 0.82 +0.4
558,700 + HMPREF1058_RS10810 0.85 -0.3
558,716 + HMPREF1058_RS10810 0.86 +0.9
558,759 + HMPREF1058_RS10810 0.87 -0.0
558,759 + HMPREF1058_RS10810 0.87 -1.6
558,794 - HMPREF1058_RS10810 0.89 -0.2
558,794 - HMPREF1058_RS10810 0.89 -0.3
558,877 - -1.7
558,878 + -0.1
558,879 - -0.4
558,928 - +0.5
558,987 + -0.9
558,987 + +0.5
558,988 - +0.5
558,988 - -2.1
559,031 + -1.3
559,115 + -1.0
559,116 - +2.1
559,116 - +0.2
559,128 - +2.7
559,139 + -2.3
559,183 - HMPREF1058_RS10805 0.12 +2.6
559,217 - HMPREF1058_RS10805 0.16 +2.2
559,217 - HMPREF1058_RS10805 0.16 +1.6
559,217 - HMPREF1058_RS10805 0.16 +1.5
559,218 + HMPREF1058_RS10805 0.16 -0.8
559,219 - HMPREF1058_RS10805 0.16 +1.0
559,219 - HMPREF1058_RS10805 0.16 -0.6
559,353 + HMPREF1058_RS10805 0.33 +0.9
559,353 + HMPREF1058_RS10805 0.33 -1.1
559,353 + HMPREF1058_RS10805 0.33 -0.5
559,354 - HMPREF1058_RS10805 0.33 +1.0
559,419 - HMPREF1058_RS10805 0.41 +0.8
559,472 + HMPREF1058_RS10805 0.48 +0.7
559,479 - HMPREF1058_RS10805 0.49 +0.9
559,581 + HMPREF1058_RS10805 0.61 +0.2
559,704 + HMPREF1058_RS10805 0.77 -0.5
559,705 - HMPREF1058_RS10805 0.77 +0.5
559,765 + HMPREF1058_RS10805 0.84 +0.0
559,766 - HMPREF1058_RS10805 0.84 +2.2
559,767 + HMPREF1058_RS10805 0.84 -1.1
559,767 + HMPREF1058_RS10805 0.84 -0.1
559,767 + HMPREF1058_RS10805 0.84 -1.9
559,767 + HMPREF1058_RS10805 0.84 -1.0
559,768 - HMPREF1058_RS10805 0.85 +0.3
559,770 - HMPREF1058_RS10805 0.85 +2.2
559,770 - HMPREF1058_RS10805 0.85 +1.0
559,773 - HMPREF1058_RS10805 0.85 +1.1
559,773 - HMPREF1058_RS10805 0.85 +1.5
559,778 - +0.4
559,778 - HMPREF1058_RS10805 0.86 +1.1
559,916 - +2.8
559,982 + -0.4
560,080 - HMPREF1058_RS10800 0.23 +0.1
560,083 + HMPREF1058_RS10800 0.24 +0.4
560,083 + HMPREF1058_RS10800 0.24 +0.6
560,276 + HMPREF1058_RS10800 0.62 -1.3
560,277 - HMPREF1058_RS10800 0.62 +0.9
560,290 + HMPREF1058_RS10800 0.65 -0.2
560,291 - HMPREF1058_RS10800 0.65 +0.1
560,311 + HMPREF1058_RS10800 0.69 -0.6
560,312 - HMPREF1058_RS10800 0.69 -0.4
560,393 - HMPREF1058_RS10800 0.85 -0.2
560,406 + HMPREF1058_RS10800 0.87 -0.7
560,407 - HMPREF1058_RS10800 0.87 +0.1
560,407 - HMPREF1058_RS10800 0.87 +0.5
560,462 + -0.5
560,463 - -1.4
560,664 - +0.1
560,674 + -1.5
560,674 + -0.3
560,718 - -0.9
560,849 + +0.0
560,850 - -2.4

Or see this region's nucleotide sequence