Experiment: Galactan from Potato 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS10790 and HMPREF1058_RS10785 are separated by 320 nucleotides HMPREF1058_RS10785 and HMPREF1058_RS10780 overlap by 29 nucleotides HMPREF1058_RS10780 and HMPREF1058_RS10775 are separated by 152 nucleotides HMPREF1058_RS10775 and HMPREF1058_RS10770 are separated by 18 nucleotides
HMPREF1058_RS10790: HMPREF1058_RS10790 - SusC/RagA family TonB-linked outer membrane protein, at 562,419 to 565,460
_RS10790
HMPREF1058_RS10785: HMPREF1058_RS10785 - RNA polymerase sigma-70 factor, at 565,781 to 566,326
_RS10785
HMPREF1058_RS10780: HMPREF1058_RS10780 - phosphoribosylglycinamide formyltransferase, at 566,298 to 566,876
_RS10780
HMPREF1058_RS10775: HMPREF1058_RS10775 - acyl carrier protein, at 567,029 to 567,265
_RS10775
HMPREF1058_RS10770: HMPREF1058_RS10770 - beta-ketoacyl-ACP synthase II, at 567,284 to 568,549
_RS10770
Position (kb) 565
566
567 Strain fitness (log2 ratio) -2
-1
0
1
2 at 564.821 kb on + strand, within HMPREF1058_RS10790 at 564.822 kb on - strand, within HMPREF1058_RS10790 at 564.822 kb on - strand at 564.915 kb on + strand, within HMPREF1058_RS10790 at 564.948 kb on - strand, within HMPREF1058_RS10790 at 565.023 kb on - strand, within HMPREF1058_RS10790 at 565.023 kb on - strand, within HMPREF1058_RS10790 at 565.073 kb on + strand, within HMPREF1058_RS10790 at 565.073 kb on + strand, within HMPREF1058_RS10790 at 565.096 kb on + strand, within HMPREF1058_RS10790 at 565.096 kb on + strand, within HMPREF1058_RS10790 at 565.097 kb on - strand, within HMPREF1058_RS10790 at 565.097 kb on - strand, within HMPREF1058_RS10790 at 565.140 kb on + strand, within HMPREF1058_RS10790 at 565.230 kb on + strand at 565.231 kb on - strand at 565.231 kb on - strand at 565.231 kb on - strand at 565.231 kb on - strand at 565.276 kb on + strand at 565.313 kb on + strand at 565.319 kb on + strand at 565.326 kb on + strand at 565.362 kb on - strand at 565.461 kb on - strand at 565.509 kb on + strand at 565.613 kb on + strand at 565.658 kb on - strand at 565.749 kb on - strand at 565.781 kb on - strand at 565.853 kb on + strand, within HMPREF1058_RS10785 at 565.862 kb on + strand, within HMPREF1058_RS10785 at 565.923 kb on + strand, within HMPREF1058_RS10785 at 565.943 kb on + strand, within HMPREF1058_RS10785 at 565.943 kb on + strand, within HMPREF1058_RS10785 at 565.943 kb on + strand, within HMPREF1058_RS10785 at 565.944 kb on - strand, within HMPREF1058_RS10785 at 565.944 kb on - strand, within HMPREF1058_RS10785 at 565.944 kb on - strand, within HMPREF1058_RS10785 at 565.971 kb on + strand, within HMPREF1058_RS10785 at 565.998 kb on + strand, within HMPREF1058_RS10785 at 565.999 kb on - strand, within HMPREF1058_RS10785 at 566.002 kb on + strand, within HMPREF1058_RS10785 at 566.062 kb on - strand, within HMPREF1058_RS10785 at 566.073 kb on - strand, within HMPREF1058_RS10785 at 566.137 kb on + strand, within HMPREF1058_RS10785 at 566.137 kb on + strand, within HMPREF1058_RS10785 at 566.137 kb on + strand, within HMPREF1058_RS10785 at 566.138 kb on - strand, within HMPREF1058_RS10785 at 566.138 kb on - strand, within HMPREF1058_RS10785 at 566.138 kb on - strand, within HMPREF1058_RS10785 at 566.141 kb on + strand, within HMPREF1058_RS10785 at 566.141 kb on + strand, within HMPREF1058_RS10785 at 566.141 kb on + strand, within HMPREF1058_RS10785 at 566.141 kb on + strand, within HMPREF1058_RS10785 at 566.141 kb on + strand, within HMPREF1058_RS10785 at 566.142 kb on - strand, within HMPREF1058_RS10785 at 566.143 kb on + strand, within HMPREF1058_RS10785 at 566.184 kb on + strand, within HMPREF1058_RS10785 at 566.184 kb on + strand, within HMPREF1058_RS10785 at 566.186 kb on + strand, within HMPREF1058_RS10785 at 566.203 kb on + strand, within HMPREF1058_RS10785 at 566.387 kb on + strand, within HMPREF1058_RS10780 at 566.450 kb on - strand, within HMPREF1058_RS10780 at 566.460 kb on + strand, within HMPREF1058_RS10780 at 566.461 kb on - strand, within HMPREF1058_RS10780 at 566.462 kb on + strand, within HMPREF1058_RS10780 at 566.462 kb on + strand, within HMPREF1058_RS10780 at 566.503 kb on - strand, within HMPREF1058_RS10780 at 566.530 kb on + strand, within HMPREF1058_RS10780 at 566.535 kb on - strand, within HMPREF1058_RS10780 at 566.574 kb on - strand, within HMPREF1058_RS10780 at 566.581 kb on - strand, within HMPREF1058_RS10780 at 566.616 kb on + strand, within HMPREF1058_RS10780 at 566.640 kb on + strand, within HMPREF1058_RS10780 at 566.641 kb on - strand, within HMPREF1058_RS10780 at 566.645 kb on + strand, within HMPREF1058_RS10780 at 566.715 kb on - strand, within HMPREF1058_RS10780
Per-strain Table
Position Strand Gene LocusTag Fraction Galactan from Potato 2.5 mg/ml (C) remove 564,821 + HMPREF1058_RS10790 0.79 +0.6 564,822 - HMPREF1058_RS10790 0.79 +0.2 564,822 - +2.2 564,915 + HMPREF1058_RS10790 0.82 +0.5 564,948 - HMPREF1058_RS10790 0.83 -0.9 565,023 - HMPREF1058_RS10790 0.86 +0.1 565,023 - HMPREF1058_RS10790 0.86 +0.3 565,073 + HMPREF1058_RS10790 0.87 +0.1 565,073 + HMPREF1058_RS10790 0.87 +0.1 565,096 + HMPREF1058_RS10790 0.88 -1.4 565,096 + HMPREF1058_RS10790 0.88 +0.4 565,097 - HMPREF1058_RS10790 0.88 +0.4 565,097 - HMPREF1058_RS10790 0.88 -0.3 565,140 + HMPREF1058_RS10790 0.89 +0.2 565,230 + -0.1 565,231 - +1.1 565,231 - +0.1 565,231 - +1.6 565,231 - -0.8 565,276 + +1.7 565,313 + +1.3 565,319 + -0.9 565,326 + -1.1 565,362 - -0.2 565,461 - +0.2 565,509 + -0.2 565,613 + +1.6 565,658 - +0.1 565,749 - -1.6 565,781 - -0.9 565,853 + HMPREF1058_RS10785 0.13 +1.0 565,862 + HMPREF1058_RS10785 0.15 +0.8 565,923 + HMPREF1058_RS10785 0.26 +1.2 565,943 + HMPREF1058_RS10785 0.30 -0.5 565,943 + HMPREF1058_RS10785 0.30 -1.9 565,943 + HMPREF1058_RS10785 0.30 -0.2 565,944 - HMPREF1058_RS10785 0.30 +1.4 565,944 - HMPREF1058_RS10785 0.30 -0.5 565,944 - HMPREF1058_RS10785 0.30 +0.8 565,971 + HMPREF1058_RS10785 0.35 +1.3 565,998 + HMPREF1058_RS10785 0.40 +1.3 565,999 - HMPREF1058_RS10785 0.40 -1.0 566,002 + HMPREF1058_RS10785 0.40 +0.8 566,062 - HMPREF1058_RS10785 0.51 -0.0 566,073 - HMPREF1058_RS10785 0.53 +0.4 566,137 + HMPREF1058_RS10785 0.65 +0.1 566,137 + HMPREF1058_RS10785 0.65 +1.1 566,137 + HMPREF1058_RS10785 0.65 +0.6 566,138 - HMPREF1058_RS10785 0.65 +0.6 566,138 - HMPREF1058_RS10785 0.65 +0.9 566,138 - HMPREF1058_RS10785 0.65 +0.3 566,141 + HMPREF1058_RS10785 0.66 -0.2 566,141 + HMPREF1058_RS10785 0.66 +0.6 566,141 + HMPREF1058_RS10785 0.66 -1.9 566,141 + HMPREF1058_RS10785 0.66 +0.5 566,141 + HMPREF1058_RS10785 0.66 +0.3 566,142 - HMPREF1058_RS10785 0.66 +1.5 566,143 + HMPREF1058_RS10785 0.66 -0.4 566,184 + HMPREF1058_RS10785 0.74 +0.8 566,184 + HMPREF1058_RS10785 0.74 -1.0 566,186 + HMPREF1058_RS10785 0.74 +0.6 566,203 + HMPREF1058_RS10785 0.77 -0.2 566,387 + HMPREF1058_RS10780 0.15 -1.6 566,450 - HMPREF1058_RS10780 0.26 -0.3 566,460 + HMPREF1058_RS10780 0.28 +1.3 566,461 - HMPREF1058_RS10780 0.28 -0.5 566,462 + HMPREF1058_RS10780 0.28 +2.6 566,462 + HMPREF1058_RS10780 0.28 +0.2 566,503 - HMPREF1058_RS10780 0.35 +0.1 566,530 + HMPREF1058_RS10780 0.40 +0.1 566,535 - HMPREF1058_RS10780 0.41 +0.5 566,574 - HMPREF1058_RS10780 0.48 +0.4 566,581 - HMPREF1058_RS10780 0.49 +0.1 566,616 + HMPREF1058_RS10780 0.55 +0.5 566,640 + HMPREF1058_RS10780 0.59 +0.3 566,641 - HMPREF1058_RS10780 0.59 +1.7 566,645 + HMPREF1058_RS10780 0.60 -0.3 566,715 - HMPREF1058_RS10780 0.72 +0.6
Or see this region's nucleotide sequence