Experiment: Galactan from Potato 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS10770 and HMPREF1058_RS10765 are separated by 2 nucleotides HMPREF1058_RS10765 and HMPREF1058_RS10760 are separated by 144 nucleotides
HMPREF1058_RS10770: HMPREF1058_RS10770 - beta-ketoacyl-ACP synthase II, at 567,284 to 568,549
_RS10770
HMPREF1058_RS10765: HMPREF1058_RS10765 - ribonuclease III, at 568,552 to 569,478
_RS10765
HMPREF1058_RS10760: HMPREF1058_RS10760 - sulfatase, at 569,623 to 571,176
_RS10760
Position (kb) 568
569
570 Strain fitness (log2 ratio) -1
0
1
2
3 at 568.594 kb on - strand at 568.640 kb on - strand at 568.653 kb on + strand, within HMPREF1058_RS10765 at 568.661 kb on - strand, within HMPREF1058_RS10765 at 568.869 kb on + strand, within HMPREF1058_RS10765 at 568.872 kb on - strand, within HMPREF1058_RS10765 at 568.901 kb on - strand, within HMPREF1058_RS10765 at 568.901 kb on - strand, within HMPREF1058_RS10765 at 568.924 kb on - strand, within HMPREF1058_RS10765 at 568.930 kb on + strand, within HMPREF1058_RS10765 at 568.932 kb on + strand, within HMPREF1058_RS10765 at 568.932 kb on + strand, within HMPREF1058_RS10765 at 568.932 kb on + strand, within HMPREF1058_RS10765 at 568.932 kb on + strand, within HMPREF1058_RS10765 at 568.932 kb on + strand, within HMPREF1058_RS10765 at 568.933 kb on - strand, within HMPREF1058_RS10765 at 568.968 kb on + strand, within HMPREF1058_RS10765 at 568.972 kb on + strand, within HMPREF1058_RS10765 at 568.973 kb on - strand, within HMPREF1058_RS10765 at 569.033 kb on - strand at 569.034 kb on + strand, within HMPREF1058_RS10765 at 569.035 kb on - strand, within HMPREF1058_RS10765 at 569.036 kb on + strand, within HMPREF1058_RS10765 at 569.036 kb on + strand, within HMPREF1058_RS10765 at 569.158 kb on - strand, within HMPREF1058_RS10765 at 569.194 kb on - strand, within HMPREF1058_RS10765 at 569.359 kb on - strand, within HMPREF1058_RS10765 at 569.436 kb on - strand at 569.509 kb on + strand at 569.514 kb on - strand at 569.514 kb on - strand at 569.550 kb on + strand at 569.550 kb on + strand at 569.554 kb on + strand at 569.555 kb on - strand at 569.557 kb on + strand at 569.609 kb on + strand at 569.609 kb on + strand at 569.609 kb on + strand at 569.609 kb on + strand at 569.610 kb on - strand at 569.708 kb on - strand at 569.729 kb on - strand at 569.752 kb on + strand at 569.782 kb on + strand, within HMPREF1058_RS10760 at 569.782 kb on + strand, within HMPREF1058_RS10760 at 569.782 kb on + strand, within HMPREF1058_RS10760 at 569.783 kb on - strand, within HMPREF1058_RS10760 at 569.889 kb on + strand, within HMPREF1058_RS10760 at 569.890 kb on - strand, within HMPREF1058_RS10760 at 569.890 kb on - strand, within HMPREF1058_RS10760 at 569.973 kb on + strand, within HMPREF1058_RS10760 at 570.016 kb on + strand, within HMPREF1058_RS10760 at 570.021 kb on + strand, within HMPREF1058_RS10760 at 570.021 kb on + strand, within HMPREF1058_RS10760 at 570.021 kb on + strand, within HMPREF1058_RS10760 at 570.022 kb on - strand, within HMPREF1058_RS10760 at 570.042 kb on + strand, within HMPREF1058_RS10760 at 570.047 kb on + strand, within HMPREF1058_RS10760 at 570.076 kb on + strand, within HMPREF1058_RS10760 at 570.123 kb on - strand, within HMPREF1058_RS10760 at 570.125 kb on - strand, within HMPREF1058_RS10760 at 570.125 kb on - strand, within HMPREF1058_RS10760 at 570.235 kb on - strand, within HMPREF1058_RS10760 at 570.288 kb on + strand, within HMPREF1058_RS10760 at 570.304 kb on + strand, within HMPREF1058_RS10760 at 570.305 kb on - strand, within HMPREF1058_RS10760 at 570.314 kb on + strand, within HMPREF1058_RS10760 at 570.398 kb on + strand, within HMPREF1058_RS10760 at 570.408 kb on + strand, within HMPREF1058_RS10760 at 570.408 kb on + strand, within HMPREF1058_RS10760 at 570.408 kb on + strand, within HMPREF1058_RS10760 at 570.408 kb on + strand, within HMPREF1058_RS10760 at 570.410 kb on + strand, within HMPREF1058_RS10760 at 570.410 kb on + strand, within HMPREF1058_RS10760 at 570.410 kb on + strand, within HMPREF1058_RS10760 at 570.410 kb on + strand, within HMPREF1058_RS10760 at 570.411 kb on - strand, within HMPREF1058_RS10760 at 570.411 kb on - strand, within HMPREF1058_RS10760 at 570.411 kb on - strand, within HMPREF1058_RS10760 at 570.412 kb on + strand, within HMPREF1058_RS10760 at 570.412 kb on + strand, within HMPREF1058_RS10760 at 570.413 kb on - strand, within HMPREF1058_RS10760 at 570.413 kb on - strand, within HMPREF1058_RS10760 at 570.417 kb on - strand, within HMPREF1058_RS10760
Per-strain Table
Position Strand Gene LocusTag Fraction Galactan from Potato 2.5 mg/ml (C) remove 568,594 - -0.8 568,640 - -0.3 568,653 + HMPREF1058_RS10765 0.11 +1.8 568,661 - HMPREF1058_RS10765 0.12 +1.0 568,869 + HMPREF1058_RS10765 0.34 +1.9 568,872 - HMPREF1058_RS10765 0.35 +2.3 568,901 - HMPREF1058_RS10765 0.38 +1.1 568,901 - HMPREF1058_RS10765 0.38 +2.2 568,924 - HMPREF1058_RS10765 0.40 +1.4 568,930 + HMPREF1058_RS10765 0.41 +1.2 568,932 + HMPREF1058_RS10765 0.41 +2.8 568,932 + HMPREF1058_RS10765 0.41 +2.3 568,932 + HMPREF1058_RS10765 0.41 +2.4 568,932 + HMPREF1058_RS10765 0.41 +2.6 568,932 + HMPREF1058_RS10765 0.41 +2.3 568,933 - HMPREF1058_RS10765 0.41 +1.5 568,968 + HMPREF1058_RS10765 0.45 +2.4 568,972 + HMPREF1058_RS10765 0.45 +2.7 568,973 - HMPREF1058_RS10765 0.45 +2.0 569,033 - +1.3 569,034 + HMPREF1058_RS10765 0.52 +1.9 569,035 - HMPREF1058_RS10765 0.52 +1.8 569,036 + HMPREF1058_RS10765 0.52 +2.4 569,036 + HMPREF1058_RS10765 0.52 +3.7 569,158 - HMPREF1058_RS10765 0.65 +3.0 569,194 - HMPREF1058_RS10765 0.69 +1.5 569,359 - HMPREF1058_RS10765 0.87 +0.1 569,436 - +0.6 569,509 + +1.0 569,514 - +0.7 569,514 - +0.4 569,550 + +0.6 569,550 + -0.6 569,554 + +2.7 569,555 - -0.7 569,557 + +1.0 569,609 + +0.3 569,609 + -0.0 569,609 + -0.4 569,609 + -0.1 569,610 - -0.4 569,708 - +0.9 569,729 - -0.3 569,752 + +0.3 569,782 + HMPREF1058_RS10760 0.10 -0.2 569,782 + HMPREF1058_RS10760 0.10 +0.2 569,782 + HMPREF1058_RS10760 0.10 -0.7 569,783 - HMPREF1058_RS10760 0.10 -0.2 569,889 + HMPREF1058_RS10760 0.17 -0.8 569,890 - HMPREF1058_RS10760 0.17 +0.0 569,890 - HMPREF1058_RS10760 0.17 -0.2 569,973 + HMPREF1058_RS10760 0.23 +1.0 570,016 + HMPREF1058_RS10760 0.25 +1.8 570,021 + HMPREF1058_RS10760 0.26 -1.4 570,021 + HMPREF1058_RS10760 0.26 +0.1 570,021 + HMPREF1058_RS10760 0.26 -0.4 570,022 - HMPREF1058_RS10760 0.26 -0.6 570,042 + HMPREF1058_RS10760 0.27 -0.8 570,047 + HMPREF1058_RS10760 0.27 -0.5 570,076 + HMPREF1058_RS10760 0.29 +0.5 570,123 - HMPREF1058_RS10760 0.32 +0.1 570,125 - HMPREF1058_RS10760 0.32 -0.8 570,125 - HMPREF1058_RS10760 0.32 +1.3 570,235 - HMPREF1058_RS10760 0.39 +0.7 570,288 + HMPREF1058_RS10760 0.43 -0.5 570,304 + HMPREF1058_RS10760 0.44 -0.5 570,305 - HMPREF1058_RS10760 0.44 -1.5 570,314 + HMPREF1058_RS10760 0.44 +0.6 570,398 + HMPREF1058_RS10760 0.50 +0.6 570,408 + HMPREF1058_RS10760 0.51 -0.5 570,408 + HMPREF1058_RS10760 0.51 +0.8 570,408 + HMPREF1058_RS10760 0.51 -0.1 570,408 + HMPREF1058_RS10760 0.51 -1.1 570,410 + HMPREF1058_RS10760 0.51 -0.2 570,410 + HMPREF1058_RS10760 0.51 -0.3 570,410 + HMPREF1058_RS10760 0.51 -0.2 570,410 + HMPREF1058_RS10760 0.51 +1.0 570,411 - HMPREF1058_RS10760 0.51 +0.2 570,411 - HMPREF1058_RS10760 0.51 -0.7 570,411 - HMPREF1058_RS10760 0.51 +0.4 570,412 + HMPREF1058_RS10760 0.51 +0.3 570,412 + HMPREF1058_RS10760 0.51 +0.3 570,413 - HMPREF1058_RS10760 0.51 +0.4 570,413 - HMPREF1058_RS10760 0.51 +0.2 570,417 - HMPREF1058_RS10760 0.51 +1.8
Or see this region's nucleotide sequence