Experiment: Galactan from Potato 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS10505 and HMPREF1058_RS10500 are separated by 92 nucleotides HMPREF1058_RS10500 and HMPREF1058_RS10495 are separated by 210 nucleotides HMPREF1058_RS10495 and HMPREF1058_RS10490 overlap by 20 nucleotides
HMPREF1058_RS10505: HMPREF1058_RS10505 - DUF4981 domain-containing protein, at 650,615 to 653,944
_RS10505
HMPREF1058_RS10500: HMPREF1058_RS10500 - HU family DNA-binding protein, at 654,037 to 654,309
_RS10500
HMPREF1058_RS10495: HMPREF1058_RS10495 - rhomboid family intramembrane serine protease, at 654,520 to 655,197
_RS10495
HMPREF1058_RS10490: HMPREF1058_RS10490 - rhomboid family intramembrane serine protease, at 655,178 to 656,071
_RS10490
Position (kb) 654
655 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 653.065 kb on + strand, within HMPREF1058_RS10505 at 653.170 kb on + strand, within HMPREF1058_RS10505 at 653.179 kb on + strand, within HMPREF1058_RS10505 at 653.181 kb on + strand, within HMPREF1058_RS10505 at 653.249 kb on + strand, within HMPREF1058_RS10505 at 653.358 kb on + strand, within HMPREF1058_RS10505 at 653.433 kb on + strand, within HMPREF1058_RS10505 at 653.436 kb on - strand, within HMPREF1058_RS10505 at 653.469 kb on - strand, within HMPREF1058_RS10505 at 653.615 kb on + strand at 653.616 kb on - strand at 653.709 kb on + strand at 653.712 kb on + strand at 653.726 kb on - strand at 653.742 kb on + strand at 653.742 kb on + strand at 653.846 kb on - strand at 653.861 kb on + strand at 654.039 kb on - strand at 654.099 kb on + strand, within HMPREF1058_RS10500 at 654.099 kb on + strand, within HMPREF1058_RS10500 at 654.099 kb on + strand, within HMPREF1058_RS10500 at 654.100 kb on - strand, within HMPREF1058_RS10500 at 654.215 kb on - strand, within HMPREF1058_RS10500 at 654.322 kb on + strand at 654.330 kb on - strand at 654.335 kb on + strand at 654.368 kb on + strand at 654.369 kb on - strand at 654.515 kb on + strand at 654.601 kb on + strand, within HMPREF1058_RS10495 at 654.681 kb on + strand, within HMPREF1058_RS10495 at 654.792 kb on + strand, within HMPREF1058_RS10495 at 654.796 kb on + strand, within HMPREF1058_RS10495 at 655.145 kb on + strand at 655.173 kb on + strand at 655.190 kb on - strand at 655.190 kb on - strand at 655.228 kb on - strand at 655.229 kb on + strand at 655.229 kb on + strand at 655.230 kb on - strand at 655.230 kb on - strand at 655.231 kb on + strand at 655.242 kb on + strand at 655.242 kb on + strand at 655.244 kb on + strand at 655.246 kb on + strand at 655.246 kb on + strand at 655.246 kb on + strand at 655.247 kb on - strand at 655.247 kb on - strand at 655.261 kb on - strand at 655.270 kb on - strand, within HMPREF1058_RS10490
Per-strain Table
Position Strand Gene LocusTag Fraction Galactan from Potato 2.5 mg/ml (C) remove 653,065 + HMPREF1058_RS10505 0.74 +0.6 653,170 + HMPREF1058_RS10505 0.77 -0.9 653,179 + HMPREF1058_RS10505 0.77 +0.1 653,181 + HMPREF1058_RS10505 0.77 -0.3 653,249 + HMPREF1058_RS10505 0.79 -1.4 653,358 + HMPREF1058_RS10505 0.82 -0.3 653,433 + HMPREF1058_RS10505 0.85 -0.6 653,436 - HMPREF1058_RS10505 0.85 -1.6 653,469 - HMPREF1058_RS10505 0.86 +0.5 653,615 + +0.0 653,616 - -1.3 653,709 + +0.4 653,712 + -0.7 653,726 - +0.0 653,742 + +0.0 653,742 + -0.7 653,846 - -0.2 653,861 + +0.4 654,039 - +1.2 654,099 + HMPREF1058_RS10500 0.23 +1.8 654,099 + HMPREF1058_RS10500 0.23 +0.7 654,099 + HMPREF1058_RS10500 0.23 +0.5 654,100 - HMPREF1058_RS10500 0.23 +0.3 654,215 - HMPREF1058_RS10500 0.65 +1.7 654,322 + -1.0 654,330 - -0.0 654,335 + +1.7 654,368 + +0.7 654,369 - -1.0 654,515 + +0.8 654,601 + HMPREF1058_RS10495 0.12 -1.9 654,681 + HMPREF1058_RS10495 0.24 +0.5 654,792 + HMPREF1058_RS10495 0.40 +0.0 654,796 + HMPREF1058_RS10495 0.41 -1.5 655,145 + -0.8 655,173 + -0.2 655,190 - -0.8 655,190 - -1.6 655,228 - -0.2 655,229 + -0.4 655,229 + +1.0 655,230 - +0.4 655,230 - -0.6 655,231 + -1.9 655,242 + -1.0 655,242 + -0.8 655,244 + +0.8 655,246 + -0.5 655,246 + +0.3 655,246 + +1.5 655,247 - -3.5 655,247 - -0.7 655,261 - -1.3 655,270 - HMPREF1058_RS10490 0.10 -0.6
Or see this region's nucleotide sequence