Experiment: Galactan from Potato 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS10470 and HMPREF1058_RS10465 are separated by 305 nucleotides HMPREF1058_RS10465 and HMPREF1058_RS10460 are separated by 142 nucleotides
HMPREF1058_RS10470: HMPREF1058_RS10470 - IS1182 family transposase, at 662,573 to 663,877
_RS10470
HMPREF1058_RS10465: HMPREF1058_RS10465 - sugar kinase, at 664,183 to 665,247
_RS10465
HMPREF1058_RS10460: HMPREF1058_RS10460 - NAD-dependent epimerase/dehydratase family protein, at 665,390 to 666,343
_RS10460
Position (kb) 664
665
666 Strain fitness (log2 ratio) -1
0
1
2 at 664.021 kb on + strand at 664.054 kb on + strand at 664.054 kb on + strand at 664.054 kb on + strand at 664.055 kb on - strand at 664.068 kb on - strand at 664.072 kb on - strand at 664.076 kb on + strand at 664.076 kb on + strand at 664.098 kb on + strand at 664.219 kb on + strand at 664.264 kb on + strand at 664.264 kb on + strand at 664.264 kb on + strand at 664.265 kb on - strand at 664.358 kb on - strand, within HMPREF1058_RS10465 at 664.406 kb on + strand, within HMPREF1058_RS10465 at 664.434 kb on + strand, within HMPREF1058_RS10465 at 664.434 kb on + strand, within HMPREF1058_RS10465 at 664.482 kb on + strand, within HMPREF1058_RS10465 at 664.483 kb on - strand, within HMPREF1058_RS10465 at 664.571 kb on + strand, within HMPREF1058_RS10465 at 664.625 kb on + strand, within HMPREF1058_RS10465 at 664.656 kb on + strand, within HMPREF1058_RS10465 at 664.657 kb on - strand, within HMPREF1058_RS10465 at 664.657 kb on - strand, within HMPREF1058_RS10465 at 664.816 kb on + strand, within HMPREF1058_RS10465 at 664.914 kb on - strand, within HMPREF1058_RS10465 at 664.914 kb on - strand, within HMPREF1058_RS10465 at 664.915 kb on + strand, within HMPREF1058_RS10465 at 664.915 kb on + strand, within HMPREF1058_RS10465 at 664.918 kb on + strand, within HMPREF1058_RS10465 at 664.983 kb on - strand at 664.986 kb on + strand, within HMPREF1058_RS10465 at 665.027 kb on - strand, within HMPREF1058_RS10465 at 665.108 kb on - strand, within HMPREF1058_RS10465 at 665.108 kb on - strand, within HMPREF1058_RS10465 at 665.130 kb on - strand, within HMPREF1058_RS10465 at 665.194 kb on + strand at 665.194 kb on + strand at 665.195 kb on - strand at 665.233 kb on - strand at 665.247 kb on + strand at 665.250 kb on + strand at 665.251 kb on - strand at 665.303 kb on + strand at 665.304 kb on - strand at 665.304 kb on - strand at 665.349 kb on + strand at 665.355 kb on - strand at 665.369 kb on + strand at 665.384 kb on - strand at 665.391 kb on + strand at 665.412 kb on - strand at 665.444 kb on + strand at 665.452 kb on - strand at 665.541 kb on - strand, within HMPREF1058_RS10460 at 665.569 kb on + strand, within HMPREF1058_RS10460 at 665.572 kb on - strand, within HMPREF1058_RS10460 at 665.572 kb on - strand, within HMPREF1058_RS10460 at 665.587 kb on + strand, within HMPREF1058_RS10460 at 665.587 kb on + strand, within HMPREF1058_RS10460 at 665.590 kb on - strand, within HMPREF1058_RS10460 at 665.594 kb on - strand, within HMPREF1058_RS10460 at 665.646 kb on - strand, within HMPREF1058_RS10460 at 665.703 kb on + strand, within HMPREF1058_RS10460 at 665.703 kb on + strand, within HMPREF1058_RS10460 at 665.703 kb on + strand, within HMPREF1058_RS10460 at 665.703 kb on + strand, within HMPREF1058_RS10460 at 665.704 kb on - strand, within HMPREF1058_RS10460 at 665.711 kb on - strand, within HMPREF1058_RS10460 at 665.760 kb on - strand, within HMPREF1058_RS10460 at 665.770 kb on - strand, within HMPREF1058_RS10460 at 665.780 kb on + strand, within HMPREF1058_RS10460 at 665.828 kb on + strand, within HMPREF1058_RS10460 at 665.878 kb on - strand, within HMPREF1058_RS10460 at 665.904 kb on - strand, within HMPREF1058_RS10460 at 665.919 kb on + strand, within HMPREF1058_RS10460 at 665.919 kb on + strand, within HMPREF1058_RS10460 at 665.920 kb on - strand, within HMPREF1058_RS10460 at 665.920 kb on - strand, within HMPREF1058_RS10460 at 666.042 kb on - strand, within HMPREF1058_RS10460 at 666.110 kb on + strand, within HMPREF1058_RS10460 at 666.126 kb on + strand, within HMPREF1058_RS10460 at 666.146 kb on - strand, within HMPREF1058_RS10460 at 666.188 kb on + strand, within HMPREF1058_RS10460 at 666.188 kb on + strand, within HMPREF1058_RS10460 at 666.189 kb on - strand, within HMPREF1058_RS10460 at 666.189 kb on - strand, within HMPREF1058_RS10460
Per-strain Table
Position Strand Gene LocusTag Fraction Galactan from Potato 2.5 mg/ml (C) remove 664,021 + -0.2 664,054 + +1.8 664,054 + -0.2 664,054 + +0.5 664,055 - +0.7 664,068 - -0.3 664,072 - +0.3 664,076 + -0.1 664,076 + -0.3 664,098 + -1.3 664,219 + -0.2 664,264 + +0.2 664,264 + +0.9 664,264 + -0.3 664,265 - -0.5 664,358 - HMPREF1058_RS10465 0.16 -1.3 664,406 + HMPREF1058_RS10465 0.21 +1.5 664,434 + HMPREF1058_RS10465 0.24 +0.6 664,434 + HMPREF1058_RS10465 0.24 +0.9 664,482 + HMPREF1058_RS10465 0.28 +0.2 664,483 - HMPREF1058_RS10465 0.28 -0.8 664,571 + HMPREF1058_RS10465 0.36 +0.4 664,625 + HMPREF1058_RS10465 0.42 +0.8 664,656 + HMPREF1058_RS10465 0.44 +0.2 664,657 - HMPREF1058_RS10465 0.45 -0.8 664,657 - HMPREF1058_RS10465 0.45 -1.1 664,816 + HMPREF1058_RS10465 0.59 -1.1 664,914 - HMPREF1058_RS10465 0.69 -1.0 664,914 - HMPREF1058_RS10465 0.69 +1.1 664,915 + HMPREF1058_RS10465 0.69 -0.9 664,915 + HMPREF1058_RS10465 0.69 -0.4 664,918 + HMPREF1058_RS10465 0.69 -0.4 664,983 - +0.8 664,986 + HMPREF1058_RS10465 0.75 -0.2 665,027 - HMPREF1058_RS10465 0.79 -0.3 665,108 - HMPREF1058_RS10465 0.87 -0.9 665,108 - HMPREF1058_RS10465 0.87 +0.1 665,130 - HMPREF1058_RS10465 0.89 -0.8 665,194 + -0.1 665,194 + -0.4 665,195 - -1.1 665,233 - -0.5 665,247 + +1.8 665,250 + -0.5 665,251 - -0.5 665,303 + -0.7 665,304 - +1.0 665,304 - +0.2 665,349 + -0.8 665,355 - +0.3 665,369 + +0.2 665,384 - +0.5 665,391 + -0.7 665,412 - +0.8 665,444 + -0.3 665,452 - +1.8 665,541 - HMPREF1058_RS10460 0.16 +0.7 665,569 + HMPREF1058_RS10460 0.19 +0.2 665,572 - HMPREF1058_RS10460 0.19 -0.0 665,572 - HMPREF1058_RS10460 0.19 -0.0 665,587 + HMPREF1058_RS10460 0.21 -0.0 665,587 + HMPREF1058_RS10460 0.21 -0.5 665,590 - HMPREF1058_RS10460 0.21 -0.2 665,594 - HMPREF1058_RS10460 0.21 +0.2 665,646 - HMPREF1058_RS10460 0.27 +0.2 665,703 + HMPREF1058_RS10460 0.33 +0.1 665,703 + HMPREF1058_RS10460 0.33 +0.7 665,703 + HMPREF1058_RS10460 0.33 -0.4 665,703 + HMPREF1058_RS10460 0.33 -0.7 665,704 - HMPREF1058_RS10460 0.33 +0.2 665,711 - HMPREF1058_RS10460 0.34 +0.6 665,760 - HMPREF1058_RS10460 0.39 -0.2 665,770 - HMPREF1058_RS10460 0.40 +0.7 665,780 + HMPREF1058_RS10460 0.41 +1.5 665,828 + HMPREF1058_RS10460 0.46 -1.0 665,878 - HMPREF1058_RS10460 0.51 -0.1 665,904 - HMPREF1058_RS10460 0.54 +0.4 665,919 + HMPREF1058_RS10460 0.55 +0.3 665,919 + HMPREF1058_RS10460 0.55 -1.0 665,920 - HMPREF1058_RS10460 0.56 +0.6 665,920 - HMPREF1058_RS10460 0.56 -0.3 666,042 - HMPREF1058_RS10460 0.68 +0.1 666,110 + HMPREF1058_RS10460 0.75 +0.2 666,126 + HMPREF1058_RS10460 0.77 -0.3 666,146 - HMPREF1058_RS10460 0.79 +0.3 666,188 + HMPREF1058_RS10460 0.84 -0.1 666,188 + HMPREF1058_RS10460 0.84 +0.2 666,189 - HMPREF1058_RS10460 0.84 +0.9 666,189 - HMPREF1058_RS10460 0.84 -0.3
Or see this region's nucleotide sequence