Experiment: Galactan from Potato 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS10170 and HMPREF1058_RS10165 are separated by 34 nucleotides HMPREF1058_RS10165 and HMPREF1058_RS10160 are separated by 61 nucleotides HMPREF1058_RS10160 and HMPREF1058_RS10155 are separated by 29 nucleotides HMPREF1058_RS10155 and HMPREF1058_RS10145 are separated by 367 nucleotides
HMPREF1058_RS10170: HMPREF1058_RS10170 - ATP-binding protein, at 712,463 to 713,008
_RS10170
HMPREF1058_RS10165: HMPREF1058_RS10165 - hypothetical protein, at 713,043 to 713,825
_RS10165
HMPREF1058_RS10160: HMPREF1058_RS10160 - hypothetical protein, at 713,887 to 714,645
_RS10160
HMPREF1058_RS10155: HMPREF1058_RS10155 - hypothetical protein, at 714,675 to 715,103
_RS10155
HMPREF1058_RS10145: HMPREF1058_RS10145 - hypothetical protein, at 715,471 to 716,052
_RS10145
Position (kb) 713
714
715 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 712.889 kb on + strand, within HMPREF1058_RS10170 at 712.896 kb on + strand, within HMPREF1058_RS10170 at 712.966 kb on + strand at 712.999 kb on + strand at 712.999 kb on + strand at 712.999 kb on + strand at 712.999 kb on + strand at 713.000 kb on - strand at 713.039 kb on + strand at 713.119 kb on + strand at 713.119 kb on + strand at 713.127 kb on + strand, within HMPREF1058_RS10165 at 713.209 kb on + strand, within HMPREF1058_RS10165 at 713.209 kb on + strand, within HMPREF1058_RS10165 at 713.275 kb on + strand, within HMPREF1058_RS10165 at 713.308 kb on + strand, within HMPREF1058_RS10165 at 713.531 kb on + strand, within HMPREF1058_RS10165 at 713.546 kb on + strand, within HMPREF1058_RS10165 at 713.546 kb on + strand, within HMPREF1058_RS10165 at 713.583 kb on + strand, within HMPREF1058_RS10165 at 713.624 kb on + strand, within HMPREF1058_RS10165 at 713.628 kb on + strand, within HMPREF1058_RS10165 at 713.681 kb on + strand, within HMPREF1058_RS10165 at 713.708 kb on + strand, within HMPREF1058_RS10165 at 713.708 kb on + strand, within HMPREF1058_RS10165 at 713.708 kb on + strand, within HMPREF1058_RS10165 at 713.710 kb on + strand, within HMPREF1058_RS10165 at 713.710 kb on + strand, within HMPREF1058_RS10165 at 713.710 kb on + strand, within HMPREF1058_RS10165 at 713.949 kb on + strand at 713.955 kb on + strand at 714.312 kb on + strand, within HMPREF1058_RS10160 at 714.456 kb on + strand, within HMPREF1058_RS10160 at 714.572 kb on + strand at 714.572 kb on + strand at 714.740 kb on + strand, within HMPREF1058_RS10155 at 714.773 kb on + strand, within HMPREF1058_RS10155 at 714.804 kb on + strand, within HMPREF1058_RS10155 at 715.092 kb on + strand at 715.092 kb on + strand at 715.121 kb on + strand at 715.193 kb on + strand at 715.204 kb on + strand at 715.283 kb on + strand at 715.289 kb on + strand at 715.303 kb on + strand at 715.489 kb on + strand at 715.592 kb on + strand, within HMPREF1058_RS10145
Per-strain Table
Position Strand Gene LocusTag Fraction Galactan from Potato 2.5 mg/ml (C) remove 712,889 + HMPREF1058_RS10170 0.78 -1.0 712,896 + HMPREF1058_RS10170 0.79 +0.6 712,966 + -0.0 712,999 + -0.5 712,999 + -1.0 712,999 + -1.1 712,999 + -0.7 713,000 - -3.4 713,039 + +1.5 713,119 + -0.3 713,119 + -2.1 713,127 + HMPREF1058_RS10165 0.11 -0.7 713,209 + HMPREF1058_RS10165 0.21 -0.3 713,209 + HMPREF1058_RS10165 0.21 +0.1 713,275 + HMPREF1058_RS10165 0.30 -0.5 713,308 + HMPREF1058_RS10165 0.34 -1.6 713,531 + HMPREF1058_RS10165 0.62 -1.5 713,546 + HMPREF1058_RS10165 0.64 -1.1 713,546 + HMPREF1058_RS10165 0.64 -0.6 713,583 + HMPREF1058_RS10165 0.69 +0.1 713,624 + HMPREF1058_RS10165 0.74 -0.6 713,628 + HMPREF1058_RS10165 0.75 -0.8 713,681 + HMPREF1058_RS10165 0.81 -1.8 713,708 + HMPREF1058_RS10165 0.85 -0.1 713,708 + HMPREF1058_RS10165 0.85 +0.3 713,708 + HMPREF1058_RS10165 0.85 +0.3 713,710 + HMPREF1058_RS10165 0.85 +1.8 713,710 + HMPREF1058_RS10165 0.85 -0.1 713,710 + HMPREF1058_RS10165 0.85 -0.1 713,949 + -1.0 713,955 + -1.4 714,312 + HMPREF1058_RS10160 0.56 +2.2 714,456 + HMPREF1058_RS10160 0.75 +1.4 714,572 + -0.9 714,572 + -1.1 714,740 + HMPREF1058_RS10155 0.15 -0.9 714,773 + HMPREF1058_RS10155 0.23 -0.5 714,804 + HMPREF1058_RS10155 0.30 -0.9 715,092 + -2.4 715,092 + -0.4 715,121 + +0.8 715,193 + -0.7 715,204 + +0.1 715,283 + +0.4 715,289 + +0.8 715,303 + -0.5 715,489 + +0.4 715,592 + HMPREF1058_RS10145 0.21 -0.1
Or see this region's nucleotide sequence