Experiment: Galactan from Potato 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS10115 and HMPREF1058_RS10110 are separated by 1 nucleotides HMPREF1058_RS10110 and HMPREF1058_RS10105 are separated by 172 nucleotides HMPREF1058_RS10105 and HMPREF1058_RS10100 are separated by 32 nucleotides HMPREF1058_RS10100 and HMPREF1058_RS10095 overlap by 1 nucleotides HMPREF1058_RS10095 and HMPREF1058_RS10090 are separated by 391 nucleotides
HMPREF1058_RS10115: HMPREF1058_RS10115 - helix-turn-helix transcriptional regulator, at 721,250 to 721,801
_RS10115
HMPREF1058_RS10110: HMPREF1058_RS10110 - hypothetical protein, at 721,803 to 722,048
_RS10110
HMPREF1058_RS10105: HMPREF1058_RS10105 - helix-turn-helix transcriptional regulator, at 722,221 to 722,703
_RS10105
HMPREF1058_RS10100: HMPREF1058_RS10100 - hypothetical protein, at 722,736 to 722,948
_RS10100
HMPREF1058_RS10095: HMPREF1058_RS10095 - hypothetical protein, at 722,948 to 723,205
_RS10095
HMPREF1058_RS10090: HMPREF1058_RS10090 - phage integrase SAM-like domain-containing protein, at 723,597 to 724,940
_RS10090
Position (kb) 722
723 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 721.759 kb on + strand at 721.979 kb on + strand, within HMPREF1058_RS10110 at 722.012 kb on + strand, within HMPREF1058_RS10110 at 722.073 kb on + strand at 722.075 kb on + strand at 722.091 kb on + strand at 722.103 kb on + strand at 722.103 kb on + strand at 722.704 kb on + strand at 722.747 kb on + strand at 722.792 kb on + strand, within HMPREF1058_RS10100 at 722.792 kb on + strand, within HMPREF1058_RS10100 at 722.815 kb on + strand, within HMPREF1058_RS10100 at 722.849 kb on + strand, within HMPREF1058_RS10100 at 723.204 kb on - strand at 723.257 kb on + strand at 723.258 kb on - strand at 723.258 kb on - strand at 723.258 kb on - strand at 723.259 kb on + strand at 723.259 kb on + strand at 723.259 kb on + strand at 723.259 kb on + strand at 723.259 kb on + strand at 723.260 kb on - strand at 723.260 kb on - strand at 723.261 kb on + strand at 723.262 kb on - strand at 723.262 kb on - strand at 723.262 kb on - strand at 723.277 kb on + strand at 723.278 kb on - strand at 723.278 kb on - strand at 723.279 kb on + strand at 723.279 kb on + strand at 723.279 kb on + strand at 723.288 kb on + strand at 723.288 kb on + strand at 723.291 kb on + strand at 723.291 kb on + strand at 723.299 kb on + strand at 723.300 kb on - strand at 723.300 kb on - strand at 723.301 kb on + strand at 723.301 kb on + strand at 723.301 kb on + strand at 723.302 kb on - strand at 723.303 kb on + strand at 723.303 kb on + strand at 723.303 kb on + strand at 723.304 kb on - strand at 723.304 kb on - strand at 723.306 kb on - strand at 723.428 kb on - strand at 723.578 kb on + strand at 723.614 kb on + strand at 723.645 kb on + strand at 723.681 kb on - strand at 723.681 kb on - strand at 723.705 kb on + strand at 723.705 kb on + strand at 723.708 kb on - strand at 723.746 kb on + strand, within HMPREF1058_RS10090 at 723.769 kb on + strand, within HMPREF1058_RS10090 at 723.770 kb on - strand, within HMPREF1058_RS10090 at 723.788 kb on + strand, within HMPREF1058_RS10090 at 723.789 kb on - strand, within HMPREF1058_RS10090 at 723.789 kb on - strand, within HMPREF1058_RS10090 at 723.789 kb on - strand, within HMPREF1058_RS10090 at 723.791 kb on + strand, within HMPREF1058_RS10090 at 723.792 kb on - strand, within HMPREF1058_RS10090 at 723.815 kb on + strand, within HMPREF1058_RS10090 at 723.815 kb on + strand, within HMPREF1058_RS10090 at 723.815 kb on + strand, within HMPREF1058_RS10090 at 723.815 kb on + strand, within HMPREF1058_RS10090 at 723.815 kb on + strand, within HMPREF1058_RS10090 at 723.816 kb on - strand, within HMPREF1058_RS10090 at 723.816 kb on - strand, within HMPREF1058_RS10090 at 723.819 kb on + strand, within HMPREF1058_RS10090 at 723.819 kb on + strand, within HMPREF1058_RS10090 at 723.826 kb on + strand, within HMPREF1058_RS10090 at 723.827 kb on - strand, within HMPREF1058_RS10090 at 723.827 kb on - strand, within HMPREF1058_RS10090 at 723.834 kb on + strand, within HMPREF1058_RS10090 at 723.834 kb on + strand, within HMPREF1058_RS10090 at 723.835 kb on - strand, within HMPREF1058_RS10090 at 723.856 kb on - strand, within HMPREF1058_RS10090 at 723.856 kb on - strand, within HMPREF1058_RS10090 at 723.857 kb on + strand, within HMPREF1058_RS10090 at 723.858 kb on - strand, within HMPREF1058_RS10090 at 723.948 kb on - strand, within HMPREF1058_RS10090
Per-strain Table
Position Strand Gene LocusTag Fraction Galactan from Potato 2.5 mg/ml (C) remove 721,759 + -0.3 721,979 + HMPREF1058_RS10110 0.72 +0.1 722,012 + HMPREF1058_RS10110 0.85 +0.3 722,073 + -0.9 722,075 + +0.1 722,091 + +1.0 722,103 + +0.1 722,103 + +1.9 722,704 + -0.3 722,747 + +0.2 722,792 + HMPREF1058_RS10100 0.26 +1.3 722,792 + HMPREF1058_RS10100 0.26 +0.5 722,815 + HMPREF1058_RS10100 0.37 -0.1 722,849 + HMPREF1058_RS10100 0.53 +0.4 723,204 - +1.8 723,257 + -0.0 723,258 - +1.1 723,258 - -0.3 723,258 - +0.6 723,259 + -1.0 723,259 + -0.8 723,259 + -0.4 723,259 + +1.3 723,259 + -0.1 723,260 - +1.8 723,260 - -0.7 723,261 + -0.5 723,262 - +0.1 723,262 - -1.0 723,262 - -0.8 723,277 + -0.0 723,278 - -0.0 723,278 - -0.9 723,279 + -0.1 723,279 + +0.8 723,279 + -0.4 723,288 + -1.1 723,288 + -0.2 723,291 + +0.5 723,291 + -0.5 723,299 + +0.2 723,300 - +1.2 723,300 - -0.1 723,301 + +0.7 723,301 + +1.5 723,301 + -1.0 723,302 - -0.9 723,303 + -0.2 723,303 + -1.5 723,303 + -0.7 723,304 - -1.2 723,304 - -0.1 723,306 - -2.7 723,428 - +0.6 723,578 + +0.2 723,614 + -0.3 723,645 + -0.4 723,681 - +1.5 723,681 - -0.0 723,705 + +0.6 723,705 + +0.8 723,708 - +1.5 723,746 + HMPREF1058_RS10090 0.11 +0.1 723,769 + HMPREF1058_RS10090 0.13 +1.3 723,770 - HMPREF1058_RS10090 0.13 +0.6 723,788 + HMPREF1058_RS10090 0.14 +0.3 723,789 - HMPREF1058_RS10090 0.14 +0.6 723,789 - HMPREF1058_RS10090 0.14 +3.0 723,789 - HMPREF1058_RS10090 0.14 +0.5 723,791 + HMPREF1058_RS10090 0.14 +0.6 723,792 - HMPREF1058_RS10090 0.15 +0.2 723,815 + HMPREF1058_RS10090 0.16 -0.5 723,815 + HMPREF1058_RS10090 0.16 +0.7 723,815 + HMPREF1058_RS10090 0.16 +0.0 723,815 + HMPREF1058_RS10090 0.16 -1.0 723,815 + HMPREF1058_RS10090 0.16 -1.7 723,816 - HMPREF1058_RS10090 0.16 +0.6 723,816 - HMPREF1058_RS10090 0.16 -0.3 723,819 + HMPREF1058_RS10090 0.17 +1.0 723,819 + HMPREF1058_RS10090 0.17 +0.8 723,826 + HMPREF1058_RS10090 0.17 +0.6 723,827 - HMPREF1058_RS10090 0.17 +1.2 723,827 - HMPREF1058_RS10090 0.17 +0.7 723,834 + HMPREF1058_RS10090 0.18 -0.4 723,834 + HMPREF1058_RS10090 0.18 -0.4 723,835 - HMPREF1058_RS10090 0.18 +1.9 723,856 - HMPREF1058_RS10090 0.19 -0.7 723,856 - HMPREF1058_RS10090 0.19 +0.8 723,857 + HMPREF1058_RS10090 0.19 +0.5 723,858 - HMPREF1058_RS10090 0.19 -0.3 723,948 - HMPREF1058_RS10090 0.26 +0.7
Or see this region's nucleotide sequence