Experiment: Galactan from Potato 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS10105 and HMPREF1058_RS10100 are separated by 32 nucleotides HMPREF1058_RS10100 and HMPREF1058_RS10095 overlap by 1 nucleotides HMPREF1058_RS10095 and HMPREF1058_RS10090 are separated by 391 nucleotides HMPREF1058_RS10090 and HMPREF1058_RS10085 are separated by 97 nucleotides HMPREF1058_RS10085 and HMPREF1058_RS10080 are separated by 528 nucleotides
HMPREF1058_RS10105: HMPREF1058_RS10105 - helix-turn-helix transcriptional regulator, at 722,221 to 722,703
_RS10105
HMPREF1058_RS10100: HMPREF1058_RS10100 - hypothetical protein, at 722,736 to 722,948
_RS10100
HMPREF1058_RS10095: HMPREF1058_RS10095 - hypothetical protein, at 722,948 to 723,205
_RS10095
HMPREF1058_RS10090: HMPREF1058_RS10090 - phage integrase SAM-like domain-containing protein, at 723,597 to 724,940
_RS10090
HMPREF1058_RS10085: HMPREF1058_RS10085 - tRNA-Arg, at 725,038 to 725,109
_RS10085
HMPREF1058_RS10080: HMPREF1058_RS10080 - 2-oxoacid:acceptor oxidoreductase subunit alpha, at 725,638 to 727,485
_RS10080
Position (kb) 723
724
725 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 722.704 kb on + strand at 722.747 kb on + strand at 722.792 kb on + strand, within HMPREF1058_RS10100 at 722.792 kb on + strand, within HMPREF1058_RS10100 at 722.815 kb on + strand, within HMPREF1058_RS10100 at 722.849 kb on + strand, within HMPREF1058_RS10100 at 723.204 kb on - strand at 723.257 kb on + strand at 723.258 kb on - strand at 723.258 kb on - strand at 723.258 kb on - strand at 723.259 kb on + strand at 723.259 kb on + strand at 723.259 kb on + strand at 723.259 kb on + strand at 723.259 kb on + strand at 723.260 kb on - strand at 723.260 kb on - strand at 723.261 kb on + strand at 723.262 kb on - strand at 723.262 kb on - strand at 723.262 kb on - strand at 723.277 kb on + strand at 723.278 kb on - strand at 723.278 kb on - strand at 723.279 kb on + strand at 723.279 kb on + strand at 723.279 kb on + strand at 723.288 kb on + strand at 723.288 kb on + strand at 723.291 kb on + strand at 723.291 kb on + strand at 723.299 kb on + strand at 723.300 kb on - strand at 723.300 kb on - strand at 723.301 kb on + strand at 723.301 kb on + strand at 723.301 kb on + strand at 723.302 kb on - strand at 723.303 kb on + strand at 723.303 kb on + strand at 723.303 kb on + strand at 723.304 kb on - strand at 723.304 kb on - strand at 723.306 kb on - strand at 723.428 kb on - strand at 723.578 kb on + strand at 723.614 kb on + strand at 723.645 kb on + strand at 723.681 kb on - strand at 723.681 kb on - strand at 723.705 kb on + strand at 723.705 kb on + strand at 723.708 kb on - strand at 723.746 kb on + strand, within HMPREF1058_RS10090 at 723.769 kb on + strand, within HMPREF1058_RS10090 at 723.770 kb on - strand, within HMPREF1058_RS10090 at 723.788 kb on + strand, within HMPREF1058_RS10090 at 723.789 kb on - strand, within HMPREF1058_RS10090 at 723.789 kb on - strand, within HMPREF1058_RS10090 at 723.789 kb on - strand, within HMPREF1058_RS10090 at 723.791 kb on + strand, within HMPREF1058_RS10090 at 723.792 kb on - strand, within HMPREF1058_RS10090 at 723.815 kb on + strand, within HMPREF1058_RS10090 at 723.815 kb on + strand, within HMPREF1058_RS10090 at 723.815 kb on + strand, within HMPREF1058_RS10090 at 723.815 kb on + strand, within HMPREF1058_RS10090 at 723.815 kb on + strand, within HMPREF1058_RS10090 at 723.816 kb on - strand, within HMPREF1058_RS10090 at 723.816 kb on - strand, within HMPREF1058_RS10090 at 723.819 kb on + strand, within HMPREF1058_RS10090 at 723.819 kb on + strand, within HMPREF1058_RS10090 at 723.826 kb on + strand, within HMPREF1058_RS10090 at 723.827 kb on - strand, within HMPREF1058_RS10090 at 723.827 kb on - strand, within HMPREF1058_RS10090 at 723.834 kb on + strand, within HMPREF1058_RS10090 at 723.834 kb on + strand, within HMPREF1058_RS10090 at 723.835 kb on - strand, within HMPREF1058_RS10090 at 723.856 kb on - strand, within HMPREF1058_RS10090 at 723.856 kb on - strand, within HMPREF1058_RS10090 at 723.857 kb on + strand, within HMPREF1058_RS10090 at 723.858 kb on - strand, within HMPREF1058_RS10090 at 723.948 kb on - strand, within HMPREF1058_RS10090 at 723.956 kb on + strand, within HMPREF1058_RS10090 at 723.961 kb on - strand, within HMPREF1058_RS10090 at 723.970 kb on + strand, within HMPREF1058_RS10090 at 723.971 kb on - strand, within HMPREF1058_RS10090 at 723.971 kb on - strand, within HMPREF1058_RS10090 at 723.971 kb on - strand, within HMPREF1058_RS10090 at 724.004 kb on + strand, within HMPREF1058_RS10090 at 724.023 kb on + strand, within HMPREF1058_RS10090 at 724.023 kb on + strand, within HMPREF1058_RS10090 at 724.024 kb on - strand, within HMPREF1058_RS10090 at 724.047 kb on - strand, within HMPREF1058_RS10090 at 724.071 kb on - strand, within HMPREF1058_RS10090 at 724.071 kb on - strand, within HMPREF1058_RS10090 at 724.105 kb on + strand, within HMPREF1058_RS10090 at 724.106 kb on - strand, within HMPREF1058_RS10090 at 724.109 kb on + strand, within HMPREF1058_RS10090 at 724.110 kb on - strand, within HMPREF1058_RS10090 at 724.110 kb on - strand, within HMPREF1058_RS10090 at 724.113 kb on - strand, within HMPREF1058_RS10090 at 724.125 kb on - strand, within HMPREF1058_RS10090 at 724.140 kb on - strand, within HMPREF1058_RS10090 at 724.140 kb on - strand, within HMPREF1058_RS10090 at 724.141 kb on + strand, within HMPREF1058_RS10090 at 724.141 kb on + strand, within HMPREF1058_RS10090 at 724.143 kb on + strand, within HMPREF1058_RS10090 at 724.144 kb on - strand, within HMPREF1058_RS10090 at 724.149 kb on + strand, within HMPREF1058_RS10090 at 724.168 kb on - strand, within HMPREF1058_RS10090 at 724.211 kb on + strand, within HMPREF1058_RS10090 at 724.211 kb on + strand, within HMPREF1058_RS10090 at 724.214 kb on + strand, within HMPREF1058_RS10090 at 724.236 kb on - strand, within HMPREF1058_RS10090 at 724.236 kb on - strand, within HMPREF1058_RS10090 at 724.236 kb on - strand, within HMPREF1058_RS10090 at 724.236 kb on - strand, within HMPREF1058_RS10090 at 724.238 kb on + strand, within HMPREF1058_RS10090 at 724.239 kb on - strand, within HMPREF1058_RS10090 at 724.241 kb on - strand, within HMPREF1058_RS10090 at 724.256 kb on + strand, within HMPREF1058_RS10090 at 724.257 kb on - strand, within HMPREF1058_RS10090 at 724.257 kb on - strand, within HMPREF1058_RS10090 at 724.337 kb on - strand, within HMPREF1058_RS10090 at 724.337 kb on - strand, within HMPREF1058_RS10090 at 724.393 kb on + strand, within HMPREF1058_RS10090 at 724.393 kb on + strand, within HMPREF1058_RS10090 at 724.393 kb on + strand, within HMPREF1058_RS10090 at 724.393 kb on + strand, within HMPREF1058_RS10090 at 724.393 kb on + strand, within HMPREF1058_RS10090 at 724.394 kb on - strand, within HMPREF1058_RS10090 at 724.394 kb on - strand, within HMPREF1058_RS10090 at 724.394 kb on - strand, within HMPREF1058_RS10090 at 724.394 kb on - strand, within HMPREF1058_RS10090 at 724.398 kb on - strand, within HMPREF1058_RS10090 at 724.413 kb on + strand, within HMPREF1058_RS10090 at 724.428 kb on + strand, within HMPREF1058_RS10090 at 724.428 kb on + strand, within HMPREF1058_RS10090 at 724.428 kb on + strand, within HMPREF1058_RS10090 at 724.429 kb on - strand, within HMPREF1058_RS10090 at 724.511 kb on + strand, within HMPREF1058_RS10090 at 724.512 kb on - strand, within HMPREF1058_RS10090 at 724.512 kb on - strand, within HMPREF1058_RS10090 at 724.512 kb on - strand, within HMPREF1058_RS10090 at 724.557 kb on + strand, within HMPREF1058_RS10090 at 724.557 kb on + strand, within HMPREF1058_RS10090 at 724.558 kb on - strand, within HMPREF1058_RS10090 at 724.558 kb on - strand, within HMPREF1058_RS10090 at 724.558 kb on - strand, within HMPREF1058_RS10090 at 724.558 kb on - strand, within HMPREF1058_RS10090 at 724.558 kb on - strand, within HMPREF1058_RS10090 at 724.558 kb on - strand, within HMPREF1058_RS10090 at 724.560 kb on - strand, within HMPREF1058_RS10090 at 724.560 kb on - strand, within HMPREF1058_RS10090 at 724.560 kb on - strand, within HMPREF1058_RS10090 at 724.561 kb on + strand, within HMPREF1058_RS10090 at 724.561 kb on + strand, within HMPREF1058_RS10090 at 724.562 kb on - strand, within HMPREF1058_RS10090 at 724.562 kb on - strand, within HMPREF1058_RS10090 at 724.562 kb on - strand, within HMPREF1058_RS10090 at 724.562 kb on - strand, within HMPREF1058_RS10090 at 724.562 kb on - strand, within HMPREF1058_RS10090 at 724.562 kb on - strand, within HMPREF1058_RS10090 at 724.562 kb on - strand, within HMPREF1058_RS10090 at 724.565 kb on + strand, within HMPREF1058_RS10090 at 724.566 kb on - strand, within HMPREF1058_RS10090 at 724.664 kb on + strand, within HMPREF1058_RS10090 at 724.698 kb on - strand, within HMPREF1058_RS10090 at 724.746 kb on + strand, within HMPREF1058_RS10090 at 724.767 kb on + strand, within HMPREF1058_RS10090 at 724.768 kb on - strand, within HMPREF1058_RS10090 at 724.808 kb on + strand at 724.817 kb on + strand at 724.819 kb on + strand at 724.820 kb on - strand at 724.822 kb on - strand at 724.867 kb on - strand at 724.877 kb on + strand at 724.880 kb on + strand at 724.880 kb on + strand at 724.885 kb on + strand at 724.885 kb on + strand at 724.886 kb on - strand at 724.940 kb on + strand at 724.961 kb on - strand at 724.967 kb on - strand at 724.967 kb on - strand at 724.967 kb on - strand at 725.062 kb on + strand, within HMPREF1058_RS10085 at 725.202 kb on + strand at 725.271 kb on - strand at 725.293 kb on - strand at 725.457 kb on + strand at 725.485 kb on + strand at 725.486 kb on - strand at 725.517 kb on - strand at 725.552 kb on + strand at 725.632 kb on + strand at 725.736 kb on + strand at 725.736 kb on + strand at 725.769 kb on + strand at 725.770 kb on - strand at 725.795 kb on + strand at 725.796 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Galactan from Potato 2.5 mg/ml (C) remove 722,704 + -0.3 722,747 + +0.2 722,792 + HMPREF1058_RS10100 0.26 +1.3 722,792 + HMPREF1058_RS10100 0.26 +0.5 722,815 + HMPREF1058_RS10100 0.37 -0.1 722,849 + HMPREF1058_RS10100 0.53 +0.4 723,204 - +1.8 723,257 + -0.0 723,258 - +1.1 723,258 - -0.3 723,258 - +0.6 723,259 + -1.0 723,259 + -0.8 723,259 + -0.4 723,259 + +1.3 723,259 + -0.1 723,260 - +1.8 723,260 - -0.7 723,261 + -0.5 723,262 - +0.1 723,262 - -1.0 723,262 - -0.8 723,277 + -0.0 723,278 - -0.0 723,278 - -0.9 723,279 + -0.1 723,279 + +0.8 723,279 + -0.4 723,288 + -1.1 723,288 + -0.2 723,291 + +0.5 723,291 + -0.5 723,299 + +0.2 723,300 - +1.2 723,300 - -0.1 723,301 + +0.7 723,301 + +1.5 723,301 + -1.0 723,302 - -0.9 723,303 + -0.2 723,303 + -1.5 723,303 + -0.7 723,304 - -1.2 723,304 - -0.1 723,306 - -2.7 723,428 - +0.6 723,578 + +0.2 723,614 + -0.3 723,645 + -0.4 723,681 - +1.5 723,681 - -0.0 723,705 + +0.6 723,705 + +0.8 723,708 - +1.5 723,746 + HMPREF1058_RS10090 0.11 +0.1 723,769 + HMPREF1058_RS10090 0.13 +1.3 723,770 - HMPREF1058_RS10090 0.13 +0.6 723,788 + HMPREF1058_RS10090 0.14 +0.3 723,789 - HMPREF1058_RS10090 0.14 +0.6 723,789 - HMPREF1058_RS10090 0.14 +3.0 723,789 - HMPREF1058_RS10090 0.14 +0.5 723,791 + HMPREF1058_RS10090 0.14 +0.6 723,792 - HMPREF1058_RS10090 0.15 +0.2 723,815 + HMPREF1058_RS10090 0.16 -0.5 723,815 + HMPREF1058_RS10090 0.16 +0.7 723,815 + HMPREF1058_RS10090 0.16 +0.0 723,815 + HMPREF1058_RS10090 0.16 -1.0 723,815 + HMPREF1058_RS10090 0.16 -1.7 723,816 - HMPREF1058_RS10090 0.16 +0.6 723,816 - HMPREF1058_RS10090 0.16 -0.3 723,819 + HMPREF1058_RS10090 0.17 +1.0 723,819 + HMPREF1058_RS10090 0.17 +0.8 723,826 + HMPREF1058_RS10090 0.17 +0.6 723,827 - HMPREF1058_RS10090 0.17 +1.2 723,827 - HMPREF1058_RS10090 0.17 +0.7 723,834 + HMPREF1058_RS10090 0.18 -0.4 723,834 + HMPREF1058_RS10090 0.18 -0.4 723,835 - HMPREF1058_RS10090 0.18 +1.9 723,856 - HMPREF1058_RS10090 0.19 -0.7 723,856 - HMPREF1058_RS10090 0.19 +0.8 723,857 + HMPREF1058_RS10090 0.19 +0.5 723,858 - HMPREF1058_RS10090 0.19 -0.3 723,948 - HMPREF1058_RS10090 0.26 +0.7 723,956 + HMPREF1058_RS10090 0.27 -0.2 723,961 - HMPREF1058_RS10090 0.27 +0.3 723,970 + HMPREF1058_RS10090 0.28 -0.0 723,971 - HMPREF1058_RS10090 0.28 +2.2 723,971 - HMPREF1058_RS10090 0.28 +0.5 723,971 - HMPREF1058_RS10090 0.28 +0.8 724,004 + HMPREF1058_RS10090 0.30 +0.9 724,023 + HMPREF1058_RS10090 0.32 +1.1 724,023 + HMPREF1058_RS10090 0.32 +0.3 724,024 - HMPREF1058_RS10090 0.32 +0.8 724,047 - HMPREF1058_RS10090 0.33 +0.3 724,071 - HMPREF1058_RS10090 0.35 +0.2 724,071 - HMPREF1058_RS10090 0.35 +2.0 724,105 + HMPREF1058_RS10090 0.38 -0.4 724,106 - HMPREF1058_RS10090 0.38 +1.2 724,109 + HMPREF1058_RS10090 0.38 -0.5 724,110 - HMPREF1058_RS10090 0.38 +0.8 724,110 - HMPREF1058_RS10090 0.38 +0.4 724,113 - HMPREF1058_RS10090 0.38 +1.0 724,125 - HMPREF1058_RS10090 0.39 +0.7 724,140 - HMPREF1058_RS10090 0.40 +1.2 724,140 - HMPREF1058_RS10090 0.40 +0.3 724,141 + HMPREF1058_RS10090 0.40 +0.3 724,141 + HMPREF1058_RS10090 0.40 -0.5 724,143 + HMPREF1058_RS10090 0.41 +0.2 724,144 - HMPREF1058_RS10090 0.41 +1.7 724,149 + HMPREF1058_RS10090 0.41 -0.3 724,168 - HMPREF1058_RS10090 0.42 +0.7 724,211 + HMPREF1058_RS10090 0.46 +0.3 724,211 + HMPREF1058_RS10090 0.46 +0.4 724,214 + HMPREF1058_RS10090 0.46 -0.8 724,236 - HMPREF1058_RS10090 0.48 +0.9 724,236 - HMPREF1058_RS10090 0.48 +1.0 724,236 - HMPREF1058_RS10090 0.48 +0.3 724,236 - HMPREF1058_RS10090 0.48 +0.0 724,238 + HMPREF1058_RS10090 0.48 +0.5 724,239 - HMPREF1058_RS10090 0.48 +1.3 724,241 - HMPREF1058_RS10090 0.48 +0.2 724,256 + HMPREF1058_RS10090 0.49 -0.0 724,257 - HMPREF1058_RS10090 0.49 -1.2 724,257 - HMPREF1058_RS10090 0.49 +1.3 724,337 - HMPREF1058_RS10090 0.55 +0.3 724,337 - HMPREF1058_RS10090 0.55 +0.0 724,393 + HMPREF1058_RS10090 0.59 +0.5 724,393 + HMPREF1058_RS10090 0.59 +0.8 724,393 + HMPREF1058_RS10090 0.59 -0.7 724,393 + HMPREF1058_RS10090 0.59 -0.1 724,393 + HMPREF1058_RS10090 0.59 +0.4 724,394 - HMPREF1058_RS10090 0.59 +0.0 724,394 - HMPREF1058_RS10090 0.59 +0.1 724,394 - HMPREF1058_RS10090 0.59 +1.2 724,394 - HMPREF1058_RS10090 0.59 +0.9 724,398 - HMPREF1058_RS10090 0.60 +0.4 724,413 + HMPREF1058_RS10090 0.61 +0.3 724,428 + HMPREF1058_RS10090 0.62 -0.4 724,428 + HMPREF1058_RS10090 0.62 +0.8 724,428 + HMPREF1058_RS10090 0.62 +0.2 724,429 - HMPREF1058_RS10090 0.62 +0.4 724,511 + HMPREF1058_RS10090 0.68 -0.1 724,512 - HMPREF1058_RS10090 0.68 +1.2 724,512 - HMPREF1058_RS10090 0.68 +1.0 724,512 - HMPREF1058_RS10090 0.68 +0.8 724,557 + HMPREF1058_RS10090 0.71 +0.7 724,557 + HMPREF1058_RS10090 0.71 -0.6 724,558 - HMPREF1058_RS10090 0.72 +0.4 724,558 - HMPREF1058_RS10090 0.72 +1.0 724,558 - HMPREF1058_RS10090 0.72 -0.2 724,558 - HMPREF1058_RS10090 0.72 +1.3 724,558 - HMPREF1058_RS10090 0.72 +0.5 724,558 - HMPREF1058_RS10090 0.72 +0.2 724,560 - HMPREF1058_RS10090 0.72 +0.8 724,560 - HMPREF1058_RS10090 0.72 +1.9 724,560 - HMPREF1058_RS10090 0.72 +0.7 724,561 + HMPREF1058_RS10090 0.72 -0.2 724,561 + HMPREF1058_RS10090 0.72 -0.7 724,562 - HMPREF1058_RS10090 0.72 +1.1 724,562 - HMPREF1058_RS10090 0.72 +2.2 724,562 - HMPREF1058_RS10090 0.72 +0.6 724,562 - HMPREF1058_RS10090 0.72 +1.0 724,562 - HMPREF1058_RS10090 0.72 +0.5 724,562 - HMPREF1058_RS10090 0.72 -2.7 724,562 - HMPREF1058_RS10090 0.72 +0.5 724,565 + HMPREF1058_RS10090 0.72 -0.9 724,566 - HMPREF1058_RS10090 0.72 +0.2 724,664 + HMPREF1058_RS10090 0.79 -0.1 724,698 - HMPREF1058_RS10090 0.82 +0.3 724,746 + HMPREF1058_RS10090 0.85 +2.3 724,767 + HMPREF1058_RS10090 0.87 +0.4 724,768 - HMPREF1058_RS10090 0.87 +0.7 724,808 + +0.5 724,817 + +0.6 724,819 + +1.0 724,820 - +1.1 724,822 - -0.2 724,867 - +0.7 724,877 + -0.1 724,880 + +1.5 724,880 + +0.0 724,885 + +0.4 724,885 + +2.3 724,886 - +0.3 724,940 + +0.3 724,961 - +0.7 724,967 - +2.0 724,967 - +1.1 724,967 - +1.4 725,062 + HMPREF1058_RS10085 0.33 -2.7 725,202 + -1.6 725,271 - +0.4 725,293 - -0.7 725,457 + -0.6 725,485 + +0.6 725,486 - +0.2 725,517 - -0.7 725,552 + -0.2 725,632 + -0.5 725,736 + -2.3 725,736 + -2.0 725,769 + -1.5 725,770 - -3.6 725,795 + -0.7 725,796 - -2.8
Or see this region's nucleotide sequence