Experiment: Galactan from Potato 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS10065 and HMPREF1058_RS10060 are separated by 105 nucleotides HMPREF1058_RS10060 and HMPREF1058_RS10055 are separated by 60 nucleotides HMPREF1058_RS10055 and HMPREF1058_RS10050 are separated by 66 nucleotides
HMPREF1058_RS10065: HMPREF1058_RS10065 - phosphoenolpyruvate carboxykinase (ATP), at 729,590 to 731,197
_RS10065
HMPREF1058_RS10060: HMPREF1058_RS10060 - nitroreductase family protein, at 731,303 to 731,953
_RS10060
HMPREF1058_RS10055: HMPREF1058_RS10055 - translational GTPase TypA, at 732,014 to 733,816
_RS10055
HMPREF1058_RS10050: HMPREF1058_RS10050 - response regulator, at 733,883 to 738,004
_RS10050
Position (kb) 732
733
734 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 731.215 kb on + strand at 731.292 kb on + strand at 731.314 kb on + strand at 731.338 kb on + strand at 731.339 kb on - strand at 731.359 kb on + strand at 731.359 kb on + strand at 731.360 kb on - strand at 731.360 kb on - strand at 731.430 kb on + strand, within HMPREF1058_RS10060 at 731.431 kb on - strand, within HMPREF1058_RS10060 at 731.437 kb on + strand, within HMPREF1058_RS10060 at 731.438 kb on - strand, within HMPREF1058_RS10060 at 731.440 kb on + strand, within HMPREF1058_RS10060 at 731.453 kb on - strand, within HMPREF1058_RS10060 at 731.458 kb on - strand, within HMPREF1058_RS10060 at 731.465 kb on + strand, within HMPREF1058_RS10060 at 731.503 kb on + strand, within HMPREF1058_RS10060 at 731.504 kb on - strand, within HMPREF1058_RS10060 at 731.504 kb on - strand, within HMPREF1058_RS10060 at 731.504 kb on - strand, within HMPREF1058_RS10060 at 731.504 kb on - strand, within HMPREF1058_RS10060 at 731.506 kb on - strand, within HMPREF1058_RS10060 at 731.530 kb on + strand, within HMPREF1058_RS10060 at 731.530 kb on + strand, within HMPREF1058_RS10060 at 731.671 kb on + strand, within HMPREF1058_RS10060 at 731.671 kb on + strand, within HMPREF1058_RS10060 at 731.672 kb on - strand, within HMPREF1058_RS10060 at 731.684 kb on - strand, within HMPREF1058_RS10060 at 731.702 kb on + strand, within HMPREF1058_RS10060 at 731.702 kb on + strand, within HMPREF1058_RS10060 at 731.707 kb on + strand, within HMPREF1058_RS10060 at 731.707 kb on + strand, within HMPREF1058_RS10060 at 731.708 kb on - strand, within HMPREF1058_RS10060 at 731.708 kb on - strand, within HMPREF1058_RS10060 at 731.708 kb on - strand, within HMPREF1058_RS10060 at 731.708 kb on - strand, within HMPREF1058_RS10060 at 731.719 kb on - strand, within HMPREF1058_RS10060 at 731.772 kb on + strand, within HMPREF1058_RS10060 at 731.831 kb on + strand, within HMPREF1058_RS10060 at 731.831 kb on + strand, within HMPREF1058_RS10060 at 731.833 kb on + strand, within HMPREF1058_RS10060 at 731.835 kb on - strand, within HMPREF1058_RS10060 at 731.920 kb on + strand at 731.938 kb on - strand at 731.951 kb on + strand at 731.952 kb on - strand at 732.000 kb on + strand at 732.034 kb on + strand at 732.035 kb on - strand at 732.061 kb on + strand at 732.067 kb on + strand at 732.068 kb on - strand at 732.092 kb on + strand at 732.093 kb on - strand at 732.093 kb on - strand at 732.096 kb on + strand at 732.096 kb on + strand at 732.096 kb on + strand at 732.096 kb on + strand at 732.097 kb on - strand at 732.097 kb on - strand at 732.097 kb on - strand at 732.097 kb on - strand at 732.215 kb on + strand, within HMPREF1058_RS10055 at 732.215 kb on + strand, within HMPREF1058_RS10055 at 732.215 kb on + strand at 732.270 kb on + strand, within HMPREF1058_RS10055 at 732.271 kb on - strand, within HMPREF1058_RS10055 at 732.271 kb on - strand, within HMPREF1058_RS10055 at 732.273 kb on - strand, within HMPREF1058_RS10055 at 732.315 kb on - strand, within HMPREF1058_RS10055 at 732.364 kb on + strand, within HMPREF1058_RS10055 at 732.399 kb on + strand, within HMPREF1058_RS10055 at 732.399 kb on + strand, within HMPREF1058_RS10055 at 732.400 kb on - strand, within HMPREF1058_RS10055 at 732.459 kb on - strand, within HMPREF1058_RS10055 at 732.563 kb on + strand, within HMPREF1058_RS10055 at 732.588 kb on + strand, within HMPREF1058_RS10055 at 732.612 kb on - strand, within HMPREF1058_RS10055 at 732.623 kb on - strand, within HMPREF1058_RS10055 at 732.645 kb on - strand, within HMPREF1058_RS10055 at 732.853 kb on + strand, within HMPREF1058_RS10055 at 732.854 kb on - strand, within HMPREF1058_RS10055 at 732.962 kb on - strand, within HMPREF1058_RS10055 at 732.962 kb on - strand, within HMPREF1058_RS10055 at 732.962 kb on - strand, within HMPREF1058_RS10055 at 732.992 kb on + strand, within HMPREF1058_RS10055 at 732.992 kb on + strand, within HMPREF1058_RS10055 at 732.992 kb on + strand, within HMPREF1058_RS10055 at 732.995 kb on + strand, within HMPREF1058_RS10055 at 733.057 kb on + strand, within HMPREF1058_RS10055 at 733.057 kb on + strand, within HMPREF1058_RS10055 at 733.061 kb on + strand, within HMPREF1058_RS10055 at 733.062 kb on - strand, within HMPREF1058_RS10055 at 733.082 kb on + strand, within HMPREF1058_RS10055 at 733.083 kb on - strand, within HMPREF1058_RS10055 at 733.090 kb on + strand, within HMPREF1058_RS10055 at 733.115 kb on - strand, within HMPREF1058_RS10055 at 733.115 kb on - strand, within HMPREF1058_RS10055 at 733.121 kb on - strand, within HMPREF1058_RS10055 at 733.171 kb on + strand, within HMPREF1058_RS10055 at 733.171 kb on + strand, within HMPREF1058_RS10055 at 733.171 kb on + strand, within HMPREF1058_RS10055 at 733.171 kb on + strand, within HMPREF1058_RS10055 at 733.172 kb on - strand, within HMPREF1058_RS10055 at 733.172 kb on - strand, within HMPREF1058_RS10055 at 733.172 kb on - strand, within HMPREF1058_RS10055 at 733.172 kb on - strand, within HMPREF1058_RS10055 at 733.172 kb on - strand, within HMPREF1058_RS10055 at 733.174 kb on - strand, within HMPREF1058_RS10055 at 733.182 kb on + strand, within HMPREF1058_RS10055 at 733.183 kb on - strand, within HMPREF1058_RS10055 at 733.188 kb on - strand, within HMPREF1058_RS10055 at 733.301 kb on - strand, within HMPREF1058_RS10055 at 733.330 kb on - strand, within HMPREF1058_RS10055 at 733.448 kb on + strand, within HMPREF1058_RS10055 at 733.470 kb on - strand, within HMPREF1058_RS10055 at 733.484 kb on + strand, within HMPREF1058_RS10055 at 733.524 kb on - strand at 733.530 kb on - strand, within HMPREF1058_RS10055 at 733.534 kb on + strand, within HMPREF1058_RS10055 at 733.534 kb on + strand, within HMPREF1058_RS10055 at 733.534 kb on + strand, within HMPREF1058_RS10055 at 733.535 kb on - strand, within HMPREF1058_RS10055 at 733.535 kb on - strand, within HMPREF1058_RS10055 at 733.535 kb on - strand, within HMPREF1058_RS10055 at 733.630 kb on + strand, within HMPREF1058_RS10055 at 733.654 kb on + strand at 733.658 kb on + strand at 733.816 kb on + strand at 733.817 kb on - strand at 733.820 kb on - strand at 733.821 kb on + strand at 733.821 kb on + strand at 733.821 kb on + strand at 733.821 kb on + strand at 733.822 kb on - strand at 733.822 kb on - strand at 733.825 kb on + strand at 733.827 kb on + strand at 733.829 kb on + strand at 733.829 kb on + strand at 733.830 kb on - strand at 733.915 kb on + strand at 734.072 kb on + strand at 734.072 kb on + strand at 734.073 kb on - strand at 734.073 kb on - strand at 734.077 kb on + strand at 734.087 kb on - strand at 734.090 kb on + strand at 734.187 kb on - strand at 734.192 kb on - strand at 734.222 kb on + strand at 734.223 kb on - strand at 734.282 kb on + strand at 734.292 kb on + strand at 734.374 kb on + strand, within HMPREF1058_RS10050 at 734.391 kb on - strand, within HMPREF1058_RS10050 at 734.391 kb on - strand, within HMPREF1058_RS10050 at 734.411 kb on - strand, within HMPREF1058_RS10050 at 734.444 kb on - strand, within HMPREF1058_RS10050 at 734.552 kb on - strand, within HMPREF1058_RS10050 at 734.602 kb on - strand, within HMPREF1058_RS10050 at 734.615 kb on + strand, within HMPREF1058_RS10050 at 734.616 kb on - strand, within HMPREF1058_RS10050 at 734.616 kb on - strand, within HMPREF1058_RS10050 at 734.663 kb on + strand, within HMPREF1058_RS10050 at 734.747 kb on - strand, within HMPREF1058_RS10050
Per-strain Table
Position Strand Gene LocusTag Fraction Galactan from Potato 2.5 mg/ml (C) remove 731,215 + -0.4 731,292 + +0.7 731,314 + +0.0 731,338 + +0.5 731,339 - +2.8 731,359 + -0.6 731,359 + +0.1 731,360 - +0.4 731,360 - -0.1 731,430 + HMPREF1058_RS10060 0.20 +0.1 731,431 - HMPREF1058_RS10060 0.20 -0.6 731,437 + HMPREF1058_RS10060 0.21 -0.8 731,438 - HMPREF1058_RS10060 0.21 -0.5 731,440 + HMPREF1058_RS10060 0.21 +0.4 731,453 - HMPREF1058_RS10060 0.23 -0.4 731,458 - HMPREF1058_RS10060 0.24 +1.0 731,465 + HMPREF1058_RS10060 0.25 -0.7 731,503 + HMPREF1058_RS10060 0.31 +1.5 731,504 - HMPREF1058_RS10060 0.31 -0.1 731,504 - HMPREF1058_RS10060 0.31 +1.0 731,504 - HMPREF1058_RS10060 0.31 -0.2 731,504 - HMPREF1058_RS10060 0.31 -1.0 731,506 - HMPREF1058_RS10060 0.31 -0.5 731,530 + HMPREF1058_RS10060 0.35 +0.3 731,530 + HMPREF1058_RS10060 0.35 +0.2 731,671 + HMPREF1058_RS10060 0.57 +0.5 731,671 + HMPREF1058_RS10060 0.57 +0.4 731,672 - HMPREF1058_RS10060 0.57 +0.7 731,684 - HMPREF1058_RS10060 0.59 -2.5 731,702 + HMPREF1058_RS10060 0.61 +1.8 731,702 + HMPREF1058_RS10060 0.61 +1.5 731,707 + HMPREF1058_RS10060 0.62 -0.3 731,707 + HMPREF1058_RS10060 0.62 -0.2 731,708 - HMPREF1058_RS10060 0.62 -0.4 731,708 - HMPREF1058_RS10060 0.62 +0.2 731,708 - HMPREF1058_RS10060 0.62 -0.3 731,708 - HMPREF1058_RS10060 0.62 -0.3 731,719 - HMPREF1058_RS10060 0.64 +0.2 731,772 + HMPREF1058_RS10060 0.72 +2.2 731,831 + HMPREF1058_RS10060 0.81 +0.2 731,831 + HMPREF1058_RS10060 0.81 +1.2 731,833 + HMPREF1058_RS10060 0.81 -1.4 731,835 - HMPREF1058_RS10060 0.82 -0.2 731,920 + +0.3 731,938 - -0.1 731,951 + +0.2 731,952 - +1.8 732,000 + +0.6 732,034 + -0.0 732,035 - -0.8 732,061 + +1.8 732,067 + +0.9 732,068 - +1.6 732,092 + +1.1 732,093 - +0.6 732,093 - +0.5 732,096 + +1.2 732,096 + +1.2 732,096 + +0.2 732,096 + +1.4 732,097 - +1.9 732,097 - +2.0 732,097 - +1.2 732,097 - +1.4 732,215 + HMPREF1058_RS10055 0.11 +1.4 732,215 + HMPREF1058_RS10055 0.11 -0.0 732,215 + -0.2 732,270 + HMPREF1058_RS10055 0.14 +1.2 732,271 - HMPREF1058_RS10055 0.14 +1.3 732,271 - HMPREF1058_RS10055 0.14 +1.2 732,273 - HMPREF1058_RS10055 0.14 +0.1 732,315 - HMPREF1058_RS10055 0.17 +0.8 732,364 + HMPREF1058_RS10055 0.19 -0.3 732,399 + HMPREF1058_RS10055 0.21 +2.2 732,399 + HMPREF1058_RS10055 0.21 +0.5 732,400 - HMPREF1058_RS10055 0.21 +1.2 732,459 - HMPREF1058_RS10055 0.25 +1.4 732,563 + HMPREF1058_RS10055 0.30 +0.7 732,588 + HMPREF1058_RS10055 0.32 +0.1 732,612 - HMPREF1058_RS10055 0.33 +1.8 732,623 - HMPREF1058_RS10055 0.34 +0.1 732,645 - HMPREF1058_RS10055 0.35 +2.4 732,853 + HMPREF1058_RS10055 0.47 +1.8 732,854 - HMPREF1058_RS10055 0.47 -0.6 732,962 - HMPREF1058_RS10055 0.53 +1.6 732,962 - HMPREF1058_RS10055 0.53 +0.8 732,962 - HMPREF1058_RS10055 0.53 +2.0 732,992 + HMPREF1058_RS10055 0.54 +1.6 732,992 + HMPREF1058_RS10055 0.54 +1.4 732,992 + HMPREF1058_RS10055 0.54 -0.9 732,995 + HMPREF1058_RS10055 0.54 +0.4 733,057 + HMPREF1058_RS10055 0.58 -0.4 733,057 + HMPREF1058_RS10055 0.58 +2.2 733,061 + HMPREF1058_RS10055 0.58 +0.4 733,062 - HMPREF1058_RS10055 0.58 +1.2 733,082 + HMPREF1058_RS10055 0.59 -0.1 733,083 - HMPREF1058_RS10055 0.59 +1.2 733,090 + HMPREF1058_RS10055 0.60 +2.1 733,115 - HMPREF1058_RS10055 0.61 +1.8 733,115 - HMPREF1058_RS10055 0.61 +0.9 733,121 - HMPREF1058_RS10055 0.61 +0.8 733,171 + HMPREF1058_RS10055 0.64 +0.1 733,171 + HMPREF1058_RS10055 0.64 +1.1 733,171 + HMPREF1058_RS10055 0.64 +0.7 733,171 + HMPREF1058_RS10055 0.64 +0.6 733,172 - HMPREF1058_RS10055 0.64 +0.3 733,172 - HMPREF1058_RS10055 0.64 +0.8 733,172 - HMPREF1058_RS10055 0.64 +0.9 733,172 - HMPREF1058_RS10055 0.64 +0.3 733,172 - HMPREF1058_RS10055 0.64 +1.9 733,174 - HMPREF1058_RS10055 0.64 +1.8 733,182 + HMPREF1058_RS10055 0.65 +0.4 733,183 - HMPREF1058_RS10055 0.65 +0.7 733,188 - HMPREF1058_RS10055 0.65 -0.3 733,301 - HMPREF1058_RS10055 0.71 +0.5 733,330 - HMPREF1058_RS10055 0.73 +0.5 733,448 + HMPREF1058_RS10055 0.80 -0.4 733,470 - HMPREF1058_RS10055 0.81 -1.0 733,484 + HMPREF1058_RS10055 0.82 +1.0 733,524 - +0.7 733,530 - HMPREF1058_RS10055 0.84 +2.8 733,534 + HMPREF1058_RS10055 0.84 +0.9 733,534 + HMPREF1058_RS10055 0.84 +1.0 733,534 + HMPREF1058_RS10055 0.84 +0.7 733,535 - HMPREF1058_RS10055 0.84 +0.6 733,535 - HMPREF1058_RS10055 0.84 +0.7 733,535 - HMPREF1058_RS10055 0.84 +0.4 733,630 + HMPREF1058_RS10055 0.90 -0.1 733,654 + +1.5 733,658 + -0.8 733,816 + +0.1 733,817 - +0.8 733,820 - +2.7 733,821 + +1.3 733,821 + +2.0 733,821 + +0.8 733,821 + -1.2 733,822 - -0.2 733,822 - -0.1 733,825 + +1.3 733,827 + -0.4 733,829 + +2.0 733,829 + +1.9 733,830 - +0.2 733,915 + -0.1 734,072 + -1.5 734,072 + -1.3 734,073 - -0.1 734,073 - -0.6 734,077 + -2.2 734,087 - -0.2 734,090 + +0.4 734,187 - -1.6 734,192 - +0.6 734,222 + -0.5 734,223 - +1.0 734,282 + -1.1 734,292 + +0.1 734,374 + HMPREF1058_RS10050 0.12 -0.2 734,391 - HMPREF1058_RS10050 0.12 -0.6 734,391 - HMPREF1058_RS10050 0.12 +1.4 734,411 - HMPREF1058_RS10050 0.13 +0.0 734,444 - HMPREF1058_RS10050 0.14 -1.2 734,552 - HMPREF1058_RS10050 0.16 +0.1 734,602 - HMPREF1058_RS10050 0.17 -1.8 734,615 + HMPREF1058_RS10050 0.18 +1.4 734,616 - HMPREF1058_RS10050 0.18 -0.0 734,616 - HMPREF1058_RS10050 0.18 +0.0 734,663 + HMPREF1058_RS10050 0.19 -0.5 734,747 - HMPREF1058_RS10050 0.21 +1.0
Or see this region's nucleotide sequence