Experiment: Galactan from Potato 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS09670 and HMPREF1058_RS09665 are separated by 15 nucleotides HMPREF1058_RS09665 and HMPREF1058_RS09660 are separated by 73 nucleotides HMPREF1058_RS09660 and HMPREF1058_RS09655 are separated by 9 nucleotides
HMPREF1058_RS09670: HMPREF1058_RS09670 - pyruvate kinase, at 824,426 to 825,889
_RS09670
HMPREF1058_RS09665: HMPREF1058_RS09665 - class I SAM-dependent methyltransferase, at 825,905 to 826,543
_RS09665
HMPREF1058_RS09660: HMPREF1058_RS09660 - 30S ribosome-binding factor RbfA, at 826,617 to 826,952
_RS09660
HMPREF1058_RS09655: HMPREF1058_RS09655 - ABC transporter permease, at 826,962 to 828,200
_RS09655
Position (kb) 825
826
827 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 825.217 kb on + strand at 825.710 kb on + strand, within HMPREF1058_RS09670 at 825.845 kb on + strand at 825.846 kb on - strand at 825.857 kb on + strand at 825.857 kb on + strand at 825.858 kb on - strand at 825.887 kb on + strand at 825.887 kb on + strand at 825.888 kb on - strand at 825.888 kb on - strand at 825.891 kb on - strand at 825.891 kb on - strand at 825.893 kb on + strand at 825.893 kb on + strand at 825.932 kb on + strand at 825.934 kb on + strand at 825.965 kb on + strand at 826.042 kb on + strand, within HMPREF1058_RS09665 at 826.042 kb on + strand, within HMPREF1058_RS09665 at 826.100 kb on + strand, within HMPREF1058_RS09665 at 826.100 kb on + strand, within HMPREF1058_RS09665 at 826.101 kb on - strand, within HMPREF1058_RS09665 at 826.170 kb on + strand, within HMPREF1058_RS09665 at 826.193 kb on - strand, within HMPREF1058_RS09665 at 826.241 kb on + strand, within HMPREF1058_RS09665 at 826.242 kb on - strand, within HMPREF1058_RS09665 at 826.322 kb on + strand, within HMPREF1058_RS09665 at 826.323 kb on + strand, within HMPREF1058_RS09665 at 826.356 kb on + strand, within HMPREF1058_RS09665 at 826.407 kb on + strand, within HMPREF1058_RS09665 at 826.556 kb on + strand at 826.556 kb on + strand at 826.566 kb on + strand at 826.566 kb on + strand at 826.612 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Galactan from Potato 2.5 mg/ml (C) remove 825,217 + -0.1 825,710 + HMPREF1058_RS09670 0.88 -1.3 825,845 + -1.1 825,846 - +0.3 825,857 + -0.4 825,857 + -0.9 825,858 - -2.0 825,887 + +0.2 825,887 + +0.9 825,888 - -1.6 825,888 - -1.0 825,891 - +1.0 825,891 - -0.7 825,893 + +2.3 825,893 + +0.9 825,932 + +1.7 825,934 + +0.5 825,965 + +0.2 826,042 + HMPREF1058_RS09665 0.21 +1.9 826,042 + HMPREF1058_RS09665 0.21 -0.4 826,100 + HMPREF1058_RS09665 0.31 +0.7 826,100 + HMPREF1058_RS09665 0.31 +0.8 826,101 - HMPREF1058_RS09665 0.31 +0.3 826,170 + HMPREF1058_RS09665 0.41 +2.9 826,193 - HMPREF1058_RS09665 0.45 +0.1 826,241 + HMPREF1058_RS09665 0.53 +0.4 826,242 - HMPREF1058_RS09665 0.53 -0.4 826,322 + HMPREF1058_RS09665 0.65 +0.8 826,323 + HMPREF1058_RS09665 0.65 +1.0 826,356 + HMPREF1058_RS09665 0.71 +1.3 826,407 + HMPREF1058_RS09665 0.79 +1.5 826,556 + +0.9 826,556 + +1.6 826,566 + +1.0 826,566 + +0.7 826,612 + +1.0
Or see this region's nucleotide sequence