Experiment: Galactan from Potato 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS09655 and HMPREF1058_RS09650 are separated by 386 nucleotides HMPREF1058_RS09650 and HMPREF1058_RS09645 are separated by 56 nucleotides
HMPREF1058_RS09655: HMPREF1058_RS09655 - ABC transporter permease, at 826,962 to 828,200
_RS09655
HMPREF1058_RS09650: HMPREF1058_RS09650 - pyridoxamine kinase, at 828,587 to 829,459
_RS09650
HMPREF1058_RS09645: HMPREF1058_RS09645 - glutamate racemase, at 829,516 to 830,361
_RS09645
Position (kb) 828
829
830 Strain fitness (log2 ratio) -1
0
1
2 at 828.171 kb on + strand at 828.203 kb on + strand at 828.208 kb on - strand at 828.210 kb on + strand at 828.378 kb on - strand at 828.380 kb on + strand at 828.380 kb on + strand at 828.380 kb on + strand at 828.381 kb on - strand at 828.415 kb on - strand at 828.472 kb on - strand at 828.482 kb on - strand at 828.486 kb on + strand at 828.541 kb on - strand at 828.631 kb on + strand at 828.672 kb on + strand at 828.672 kb on + strand at 828.673 kb on - strand at 828.781 kb on + strand, within HMPREF1058_RS09650 at 828.916 kb on + strand, within HMPREF1058_RS09650 at 828.917 kb on - strand, within HMPREF1058_RS09650 at 828.976 kb on + strand, within HMPREF1058_RS09650 at 829.008 kb on + strand, within HMPREF1058_RS09650 at 829.025 kb on - strand, within HMPREF1058_RS09650 at 829.100 kb on + strand, within HMPREF1058_RS09650 at 829.100 kb on + strand, within HMPREF1058_RS09650 at 829.100 kb on + strand, within HMPREF1058_RS09650 at 829.121 kb on + strand, within HMPREF1058_RS09650 at 829.130 kb on + strand, within HMPREF1058_RS09650 at 829.131 kb on - strand, within HMPREF1058_RS09650 at 829.210 kb on - strand, within HMPREF1058_RS09650 at 829.218 kb on + strand, within HMPREF1058_RS09650 at 829.375 kb on + strand at 829.447 kb on + strand at 829.447 kb on + strand at 829.447 kb on + strand at 829.455 kb on + strand at 829.455 kb on + strand at 829.456 kb on - strand at 829.488 kb on + strand at 829.490 kb on + strand at 829.490 kb on + strand at 829.490 kb on + strand at 829.491 kb on - strand at 829.491 kb on - strand at 829.491 kb on - strand at 829.491 kb on - strand at 829.492 kb on + strand at 829.492 kb on + strand at 829.492 kb on + strand at 829.493 kb on - strand at 829.493 kb on - strand at 829.493 kb on - strand at 829.493 kb on - strand at 829.495 kb on - strand at 830.370 kb on - strand at 830.370 kb on - strand at 830.370 kb on - strand at 830.370 kb on - strand at 830.374 kb on - strand at 830.374 kb on - strand at 830.374 kb on - strand at 830.374 kb on - strand at 830.376 kb on - strand at 830.378 kb on - strand at 830.381 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Galactan from Potato 2.5 mg/ml (C) remove 828,171 + +1.5 828,203 + +0.7 828,208 - +1.9 828,210 + +0.1 828,378 - -0.3 828,380 + +0.1 828,380 + -0.1 828,380 + +0.6 828,381 - +0.3 828,415 - -0.1 828,472 - +0.3 828,482 - +0.5 828,486 + -0.7 828,541 - -0.1 828,631 + +0.3 828,672 + +0.7 828,672 + +0.4 828,673 - +1.2 828,781 + HMPREF1058_RS09650 0.22 -0.4 828,916 + HMPREF1058_RS09650 0.38 +0.3 828,917 - HMPREF1058_RS09650 0.38 +2.4 828,976 + HMPREF1058_RS09650 0.45 +1.5 829,008 + HMPREF1058_RS09650 0.48 +0.3 829,025 - HMPREF1058_RS09650 0.50 +2.1 829,100 + HMPREF1058_RS09650 0.59 +0.2 829,100 + HMPREF1058_RS09650 0.59 -0.1 829,100 + HMPREF1058_RS09650 0.59 +0.6 829,121 + HMPREF1058_RS09650 0.61 +1.0 829,130 + HMPREF1058_RS09650 0.62 +0.2 829,131 - HMPREF1058_RS09650 0.62 +1.9 829,210 - HMPREF1058_RS09650 0.71 -0.1 829,218 + HMPREF1058_RS09650 0.72 -1.2 829,375 + +0.1 829,447 + +0.8 829,447 + +0.8 829,447 + -0.4 829,455 + -0.6 829,455 + +2.0 829,456 - +0.6 829,488 + +0.8 829,490 + -0.1 829,490 + +0.7 829,490 + +1.9 829,491 - -0.2 829,491 - +1.6 829,491 - +0.2 829,491 - -0.5 829,492 + -0.2 829,492 + +0.9 829,492 + +0.2 829,493 - +0.8 829,493 - +0.6 829,493 - -0.1 829,493 - -0.9 829,495 - +0.6 830,370 - -0.0 830,370 - +0.5 830,370 - +0.5 830,370 - -0.2 830,374 - -0.7 830,374 - +0.5 830,374 - +0.7 830,374 - +0.2 830,376 - -0.6 830,378 - +1.1 830,381 - +0.2
Or see this region's nucleotide sequence