Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS09445

Experiment: Galactan from Potato 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Galactan from Potato 2.5 mg/ml (C)
881,045	+		HMPREF1058_RS09455	0.73	-3.2
881,046	-		HMPREF1058_RS09455	0.73	+0.1
881,088	-		HMPREF1058_RS09455	0.75	+0.1
881,118	-		HMPREF1058_RS09455	0.77	-0.5
881,216	+		HMPREF1058_RS09455	0.82	-1.7
881,276	-		HMPREF1058_RS09455	0.86	-0.9
881,279	-		HMPREF1058_RS09455	0.86	+1.9
881,292	-		HMPREF1058_RS09455	0.87	+2.1
881,365	+				-2.7
881,424	+				-0.2
881,424	+				-2.1
881,425	-				-0.4
881,425	-				+1.6
881,425	-				-0.1
881,500	+				-3.0
881,505	-				+1.1
881,509	+				-0.8
881,516	-				+0.6
881,542	+				-2.2
881,543	-				+1.1
881,554	+				-0.9
881,580	-				+2.9
881,597	+				+0.3
881,628	+				+1.5
881,672	+				+2.7
882,029	+				+1.1
882,033	+				-1.2
882,388	+		HMPREF1058_RS09445	0.48	+1.8
882,388	+		HMPREF1058_RS09445	0.48	-1.0
882,859	+				+1.8
882,863	+				+1.2
882,951	+		HMPREF1058_RS09440	0.29	-0.4
882,964	+		HMPREF1058_RS09440	0.33	-0.9
882,964	+		HMPREF1058_RS09440	0.33	-0.2
883,079	+		HMPREF1058_RS09440	0.72	+1.2
883,080	-		HMPREF1058_RS09440	0.72	+0.7
883,102	+		HMPREF1058_RS09440	0.79	+1.5
883,103	-		HMPREF1058_RS09440	0.80	-0.1