Experiment: Galactan from Potato 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS09215 and HMPREF1058_RS09210 are separated by 3 nucleotides HMPREF1058_RS09210 and HMPREF1058_RS09205 are separated by 410 nucleotides HMPREF1058_RS09205 and HMPREF1058_RS09200 are separated by 118 nucleotides HMPREF1058_RS09200 and HMPREF1058_RS09195 are separated by 94 nucleotides
HMPREF1058_RS09215: HMPREF1058_RS09215 - DNA-directed RNA polymerase subunit alpha, at 913,540 to 914,532
_RS09215
HMPREF1058_RS09210: HMPREF1058_RS09210 - 50S ribosomal protein L17, at 914,536 to 915,024
_RS09210
HMPREF1058_RS09205: HMPREF1058_RS09205 - hypothetical protein, at 915,435 to 915,860
_RS09205
HMPREF1058_RS09200: HMPREF1058_RS09200 - hypothetical protein, at 915,979 to 916,518
_RS09200
HMPREF1058_RS09195: HMPREF1058_RS09195 - hypothetical protein, at 916,613 to 918,412
_RS09195
Position (kb) 915
916 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 915.038 kb on + strand at 915.038 kb on + strand at 915.038 kb on + strand at 915.040 kb on + strand at 915.040 kb on + strand at 915.042 kb on + strand at 915.083 kb on + strand at 915.084 kb on - strand at 915.100 kb on + strand at 915.133 kb on + strand at 915.139 kb on + strand at 915.143 kb on - strand at 915.185 kb on - strand at 915.220 kb on - strand at 915.256 kb on + strand at 915.314 kb on + strand at 915.334 kb on + strand at 915.393 kb on - strand at 915.404 kb on + strand at 915.429 kb on + strand at 915.498 kb on + strand, within HMPREF1058_RS09205 at 915.503 kb on - strand, within HMPREF1058_RS09205 at 915.532 kb on + strand, within HMPREF1058_RS09205 at 915.541 kb on + strand, within HMPREF1058_RS09205 at 915.548 kb on + strand, within HMPREF1058_RS09205 at 915.645 kb on - strand, within HMPREF1058_RS09205 at 915.734 kb on + strand, within HMPREF1058_RS09205 at 915.773 kb on + strand, within HMPREF1058_RS09205 at 915.783 kb on + strand, within HMPREF1058_RS09205 at 915.783 kb on + strand, within HMPREF1058_RS09205 at 915.783 kb on + strand, within HMPREF1058_RS09205 at 915.784 kb on - strand, within HMPREF1058_RS09205 at 915.830 kb on + strand at 915.855 kb on - strand at 915.949 kb on + strand at 915.950 kb on - strand at 915.987 kb on + strand at 915.987 kb on + strand at 915.988 kb on - strand at 916.044 kb on + strand, within HMPREF1058_RS09200 at 916.045 kb on - strand, within HMPREF1058_RS09200 at 916.059 kb on + strand, within HMPREF1058_RS09200 at 916.088 kb on + strand, within HMPREF1058_RS09200 at 916.361 kb on + strand, within HMPREF1058_RS09200 at 916.361 kb on + strand, within HMPREF1058_RS09200 at 916.372 kb on + strand, within HMPREF1058_RS09200 at 916.372 kb on + strand, within HMPREF1058_RS09200 at 916.374 kb on + strand, within HMPREF1058_RS09200 at 916.374 kb on + strand, within HMPREF1058_RS09200 at 916.431 kb on + strand, within HMPREF1058_RS09200 at 916.436 kb on - strand, within HMPREF1058_RS09200 at 916.436 kb on - strand, within HMPREF1058_RS09200 at 916.460 kb on - strand, within HMPREF1058_RS09200 at 916.491 kb on - strand at 916.534 kb on + strand at 916.535 kb on - strand at 916.663 kb on + strand at 916.693 kb on - strand at 916.761 kb on + strand at 916.770 kb on - strand at 916.770 kb on - strand at 916.782 kb on - strand at 916.782 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Galactan from Potato 2.5 mg/ml (C) remove 915,038 + -0.7 915,038 + +1.6 915,038 + +0.9 915,040 + +2.5 915,040 + -0.5 915,042 + -0.8 915,083 + +0.4 915,084 - +0.6 915,100 + +0.6 915,133 + +1.1 915,139 + -0.2 915,143 - -0.6 915,185 - +0.5 915,220 - +3.5 915,256 + +0.7 915,314 + +0.6 915,334 + +0.6 915,393 - +0.5 915,404 + +0.4 915,429 + +0.7 915,498 + HMPREF1058_RS09205 0.15 -0.1 915,503 - HMPREF1058_RS09205 0.16 -0.3 915,532 + HMPREF1058_RS09205 0.23 +1.0 915,541 + HMPREF1058_RS09205 0.25 +0.8 915,548 + HMPREF1058_RS09205 0.27 -0.3 915,645 - HMPREF1058_RS09205 0.49 +0.2 915,734 + HMPREF1058_RS09205 0.70 -2.7 915,773 + HMPREF1058_RS09205 0.79 +1.2 915,783 + HMPREF1058_RS09205 0.82 +1.0 915,783 + HMPREF1058_RS09205 0.82 +0.8 915,783 + HMPREF1058_RS09205 0.82 +1.1 915,784 - HMPREF1058_RS09205 0.82 +0.5 915,830 + -0.4 915,855 - +0.1 915,949 + -1.5 915,950 - +0.3 915,987 + -0.2 915,987 + +0.1 915,988 - -0.3 916,044 + HMPREF1058_RS09200 0.12 -0.4 916,045 - HMPREF1058_RS09200 0.12 -0.0 916,059 + HMPREF1058_RS09200 0.15 -1.0 916,088 + HMPREF1058_RS09200 0.20 +0.6 916,361 + HMPREF1058_RS09200 0.71 +0.5 916,361 + HMPREF1058_RS09200 0.71 -0.6 916,372 + HMPREF1058_RS09200 0.73 -0.7 916,372 + HMPREF1058_RS09200 0.73 -0.2 916,374 + HMPREF1058_RS09200 0.73 -0.2 916,374 + HMPREF1058_RS09200 0.73 -0.7 916,431 + HMPREF1058_RS09200 0.84 +1.5 916,436 - HMPREF1058_RS09200 0.85 -0.1 916,436 - HMPREF1058_RS09200 0.85 +0.4 916,460 - HMPREF1058_RS09200 0.89 -0.4 916,491 - +0.4 916,534 + +0.3 916,535 - +1.8 916,663 + +0.1 916,693 - +0.0 916,761 + -0.5 916,770 - +0.6 916,770 - +0.0 916,782 - +0.6 916,782 - +1.4
Or see this region's nucleotide sequence