Experiment: Galactan from Potato 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS09070 and HMPREF1058_RS09065 are separated by 50 nucleotides HMPREF1058_RS09065 and HMPREF1058_RS09060 are separated by 17 nucleotides HMPREF1058_RS09060 and HMPREF1058_RS09055 are separated by 114 nucleotides
HMPREF1058_RS09070: HMPREF1058_RS09070 - alpha-galactosidase, at 951,730 to 953,337
_RS09070
HMPREF1058_RS09065: HMPREF1058_RS09065 - helix-turn-helix transcriptional regulator, at 953,388 to 954,158
_RS09065
HMPREF1058_RS09060: HMPREF1058_RS09060 - hypothetical protein, at 954,176 to 954,760
_RS09060
HMPREF1058_RS09055: HMPREF1058_RS09055 - MATE family efflux transporter, at 954,875 to 956,167
_RS09055
Position (kb) 954
955 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 953.219 kb on + strand at 953.267 kb on + strand at 953.268 kb on - strand at 953.268 kb on - strand at 953.304 kb on - strand at 953.335 kb on + strand at 953.344 kb on - strand at 953.457 kb on + strand at 953.477 kb on + strand, within HMPREF1058_RS09065 at 953.536 kb on + strand, within HMPREF1058_RS09065 at 953.536 kb on + strand, within HMPREF1058_RS09065 at 953.537 kb on - strand, within HMPREF1058_RS09065 at 953.537 kb on - strand, within HMPREF1058_RS09065 at 953.538 kb on + strand, within HMPREF1058_RS09065 at 953.539 kb on - strand, within HMPREF1058_RS09065 at 953.540 kb on + strand, within HMPREF1058_RS09065 at 953.540 kb on + strand, within HMPREF1058_RS09065 at 953.540 kb on + strand, within HMPREF1058_RS09065 at 953.541 kb on - strand, within HMPREF1058_RS09065 at 953.556 kb on + strand, within HMPREF1058_RS09065 at 953.556 kb on + strand, within HMPREF1058_RS09065 at 953.556 kb on + strand, within HMPREF1058_RS09065 at 953.606 kb on - strand, within HMPREF1058_RS09065 at 953.631 kb on + strand, within HMPREF1058_RS09065 at 953.645 kb on + strand, within HMPREF1058_RS09065 at 953.706 kb on + strand, within HMPREF1058_RS09065 at 953.708 kb on + strand, within HMPREF1058_RS09065 at 953.741 kb on + strand, within HMPREF1058_RS09065 at 953.742 kb on - strand, within HMPREF1058_RS09065 at 953.761 kb on + strand, within HMPREF1058_RS09065 at 953.782 kb on - strand, within HMPREF1058_RS09065 at 953.789 kb on + strand, within HMPREF1058_RS09065 at 953.855 kb on + strand, within HMPREF1058_RS09065 at 953.855 kb on + strand, within HMPREF1058_RS09065 at 953.856 kb on - strand, within HMPREF1058_RS09065 at 953.901 kb on - strand, within HMPREF1058_RS09065 at 953.995 kb on + strand, within HMPREF1058_RS09065 at 953.996 kb on - strand, within HMPREF1058_RS09065 at 954.048 kb on - strand, within HMPREF1058_RS09065 at 954.093 kb on - strand at 954.151 kb on + strand at 954.192 kb on - strand at 954.194 kb on + strand at 954.205 kb on + strand at 954.206 kb on - strand at 954.239 kb on - strand, within HMPREF1058_RS09060 at 954.321 kb on - strand, within HMPREF1058_RS09060 at 954.519 kb on - strand, within HMPREF1058_RS09060 at 954.599 kb on - strand, within HMPREF1058_RS09060 at 954.616 kb on + strand, within HMPREF1058_RS09060 at 954.650 kb on + strand, within HMPREF1058_RS09060 at 954.651 kb on - strand, within HMPREF1058_RS09060 at 954.683 kb on + strand, within HMPREF1058_RS09060 at 954.754 kb on + strand at 954.760 kb on + strand at 954.760 kb on + strand at 954.761 kb on - strand at 954.774 kb on + strand at 954.822 kb on + strand at 954.823 kb on - strand at 954.826 kb on + strand at 954.827 kb on - strand at 954.835 kb on - strand at 954.876 kb on + strand at 954.949 kb on + strand at 954.949 kb on + strand at 954.949 kb on + strand at 954.950 kb on - strand at 954.951 kb on + strand at 954.971 kb on + strand at 954.990 kb on + strand at 954.996 kb on + strand at 955.007 kb on + strand, within HMPREF1058_RS09055 at 955.007 kb on + strand, within HMPREF1058_RS09055 at 955.007 kb on + strand, within HMPREF1058_RS09055 at 955.007 kb on + strand, within HMPREF1058_RS09055 at 955.007 kb on + strand, within HMPREF1058_RS09055 at 955.009 kb on - strand, within HMPREF1058_RS09055 at 955.033 kb on + strand, within HMPREF1058_RS09055 at 955.077 kb on + strand, within HMPREF1058_RS09055 at 955.078 kb on - strand, within HMPREF1058_RS09055 at 955.078 kb on - strand, within HMPREF1058_RS09055 at 955.103 kb on - strand, within HMPREF1058_RS09055 at 955.103 kb on - strand, within HMPREF1058_RS09055 at 955.104 kb on + strand, within HMPREF1058_RS09055 at 955.104 kb on + strand, within HMPREF1058_RS09055 at 955.105 kb on - strand, within HMPREF1058_RS09055 at 955.168 kb on - strand, within HMPREF1058_RS09055 at 955.168 kb on - strand, within HMPREF1058_RS09055 at 955.326 kb on - strand, within HMPREF1058_RS09055 at 955.442 kb on - strand, within HMPREF1058_RS09055 at 955.447 kb on + strand, within HMPREF1058_RS09055 at 955.479 kb on + strand, within HMPREF1058_RS09055 at 955.479 kb on + strand, within HMPREF1058_RS09055 at 955.592 kb on + strand, within HMPREF1058_RS09055 at 955.636 kb on + strand, within HMPREF1058_RS09055 at 955.670 kb on - strand, within HMPREF1058_RS09055 at 955.673 kb on + strand, within HMPREF1058_RS09055 at 955.682 kb on + strand, within HMPREF1058_RS09055 at 955.683 kb on - strand, within HMPREF1058_RS09055
Per-strain Table
Position Strand Gene LocusTag Fraction Galactan from Potato 2.5 mg/ml (C) remove 953,219 + +0.7 953,267 + +0.2 953,268 - +0.3 953,268 - -0.8 953,304 - -0.7 953,335 + +0.1 953,344 - +1.1 953,457 + +1.6 953,477 + HMPREF1058_RS09065 0.12 +0.1 953,536 + HMPREF1058_RS09065 0.19 +0.3 953,536 + HMPREF1058_RS09065 0.19 +0.8 953,537 - HMPREF1058_RS09065 0.19 -0.7 953,537 - HMPREF1058_RS09065 0.19 -0.3 953,538 + HMPREF1058_RS09065 0.19 +2.9 953,539 - HMPREF1058_RS09065 0.20 -0.6 953,540 + HMPREF1058_RS09065 0.20 +0.7 953,540 + HMPREF1058_RS09065 0.20 -1.4 953,540 + HMPREF1058_RS09065 0.20 +0.8 953,541 - HMPREF1058_RS09065 0.20 +0.1 953,556 + HMPREF1058_RS09065 0.22 +0.4 953,556 + HMPREF1058_RS09065 0.22 -0.0 953,556 + HMPREF1058_RS09065 0.22 +0.1 953,606 - HMPREF1058_RS09065 0.28 -1.3 953,631 + HMPREF1058_RS09065 0.32 +0.1 953,645 + HMPREF1058_RS09065 0.33 +0.2 953,706 + HMPREF1058_RS09065 0.41 +0.3 953,708 + HMPREF1058_RS09065 0.42 -1.4 953,741 + HMPREF1058_RS09065 0.46 +0.2 953,742 - HMPREF1058_RS09065 0.46 +0.8 953,761 + HMPREF1058_RS09065 0.48 +0.6 953,782 - HMPREF1058_RS09065 0.51 -1.0 953,789 + HMPREF1058_RS09065 0.52 +2.1 953,855 + HMPREF1058_RS09065 0.61 +1.0 953,855 + HMPREF1058_RS09065 0.61 -0.0 953,856 - HMPREF1058_RS09065 0.61 +1.0 953,901 - HMPREF1058_RS09065 0.67 -0.1 953,995 + HMPREF1058_RS09065 0.79 +0.3 953,996 - HMPREF1058_RS09065 0.79 -0.3 954,048 - HMPREF1058_RS09065 0.86 -0.7 954,093 - +0.0 954,151 + -0.1 954,192 - -0.4 954,194 + -0.2 954,205 + +0.5 954,206 - -0.6 954,239 - HMPREF1058_RS09060 0.11 +1.6 954,321 - HMPREF1058_RS09060 0.25 -0.7 954,519 - HMPREF1058_RS09060 0.59 +0.2 954,599 - HMPREF1058_RS09060 0.72 +0.6 954,616 + HMPREF1058_RS09060 0.75 +0.7 954,650 + HMPREF1058_RS09060 0.81 +0.1 954,651 - HMPREF1058_RS09060 0.81 -0.7 954,683 + HMPREF1058_RS09060 0.87 +1.7 954,754 + -0.5 954,760 + +0.1 954,760 + -0.3 954,761 - -0.2 954,774 + +1.9 954,822 + +0.5 954,823 - -0.9 954,826 + +0.0 954,827 - -1.8 954,835 - -0.2 954,876 + +0.9 954,949 + -0.5 954,949 + -1.2 954,949 + -1.1 954,950 - -0.2 954,951 + -0.6 954,971 + -0.7 954,990 + -1.2 954,996 + +1.4 955,007 + HMPREF1058_RS09055 0.10 +1.9 955,007 + HMPREF1058_RS09055 0.10 -2.6 955,007 + HMPREF1058_RS09055 0.10 -0.0 955,007 + HMPREF1058_RS09055 0.10 +1.0 955,007 + HMPREF1058_RS09055 0.10 -1.0 955,009 - HMPREF1058_RS09055 0.10 -0.8 955,033 + HMPREF1058_RS09055 0.12 -0.2 955,077 + HMPREF1058_RS09055 0.16 -0.5 955,078 - HMPREF1058_RS09055 0.16 -0.8 955,078 - HMPREF1058_RS09055 0.16 -0.8 955,103 - HMPREF1058_RS09055 0.18 -1.2 955,103 - HMPREF1058_RS09055 0.18 +0.1 955,104 + HMPREF1058_RS09055 0.18 +0.3 955,104 + HMPREF1058_RS09055 0.18 -0.5 955,105 - HMPREF1058_RS09055 0.18 -2.2 955,168 - HMPREF1058_RS09055 0.23 +0.1 955,168 - HMPREF1058_RS09055 0.23 -1.0 955,326 - HMPREF1058_RS09055 0.35 +0.1 955,442 - HMPREF1058_RS09055 0.44 +1.6 955,447 + HMPREF1058_RS09055 0.44 -0.9 955,479 + HMPREF1058_RS09055 0.47 +0.2 955,479 + HMPREF1058_RS09055 0.47 +0.1 955,592 + HMPREF1058_RS09055 0.55 -0.1 955,636 + HMPREF1058_RS09055 0.59 +0.1 955,670 - HMPREF1058_RS09055 0.61 +0.0 955,673 + HMPREF1058_RS09055 0.62 -0.3 955,682 + HMPREF1058_RS09055 0.62 -0.2 955,683 - HMPREF1058_RS09055 0.62 +0.0
Or see this region's nucleotide sequence