Experiment: Galactan from Potato 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS08970 and HMPREF1058_RS08965 are separated by 187 nucleotides HMPREF1058_RS08965 and HMPREF1058_RS08960 are separated by 123 nucleotides
HMPREF1058_RS08970: HMPREF1058_RS08970 - endonuclease/exonuclease/phosphatase family protein, at 978,026 to 978,871
_RS08970
HMPREF1058_RS08965: HMPREF1058_RS08965 - glycoside hydrolase family 97 protein, at 979,059 to 981,074
_RS08965
HMPREF1058_RS08960: HMPREF1058_RS08960 - MFS transporter, at 981,198 to 982,496
_RS08960
Position (kb) 979
980
981
982 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 978.187 kb on + strand, within HMPREF1058_RS08970 at 978.351 kb on - strand, within HMPREF1058_RS08970 at 978.402 kb on + strand, within HMPREF1058_RS08970 at 978.562 kb on - strand, within HMPREF1058_RS08970 at 978.632 kb on + strand, within HMPREF1058_RS08970 at 978.676 kb on + strand, within HMPREF1058_RS08970 at 978.676 kb on + strand, within HMPREF1058_RS08970 at 978.676 kb on + strand, within HMPREF1058_RS08970 at 978.709 kb on + strand, within HMPREF1058_RS08970 at 978.909 kb on - strand at 978.933 kb on - strand at 978.960 kb on + strand at 978.961 kb on - strand at 978.964 kb on + strand at 978.964 kb on + strand at 978.964 kb on + strand at 978.964 kb on + strand at 978.965 kb on - strand at 978.979 kb on + strand at 979.010 kb on + strand at 979.029 kb on - strand at 979.058 kb on + strand at 979.058 kb on + strand at 979.059 kb on - strand at 979.059 kb on - strand at 979.069 kb on - strand at 979.069 kb on - strand at 979.069 kb on - strand at 979.074 kb on + strand at 979.077 kb on + strand at 979.082 kb on - strand at 979.082 kb on - strand at 979.157 kb on - strand at 979.205 kb on - strand at 979.343 kb on + strand, within HMPREF1058_RS08965 at 979.364 kb on + strand, within HMPREF1058_RS08965 at 979.563 kb on + strand, within HMPREF1058_RS08965 at 979.564 kb on - strand, within HMPREF1058_RS08965 at 979.646 kb on - strand, within HMPREF1058_RS08965 at 979.646 kb on - strand, within HMPREF1058_RS08965 at 979.647 kb on + strand, within HMPREF1058_RS08965 at 979.647 kb on + strand, within HMPREF1058_RS08965 at 979.822 kb on + strand, within HMPREF1058_RS08965 at 979.823 kb on - strand, within HMPREF1058_RS08965 at 979.913 kb on - strand, within HMPREF1058_RS08965 at 979.913 kb on - strand, within HMPREF1058_RS08965 at 979.916 kb on + strand, within HMPREF1058_RS08965 at 979.917 kb on - strand, within HMPREF1058_RS08965 at 979.998 kb on + strand, within HMPREF1058_RS08965 at 979.998 kb on + strand, within HMPREF1058_RS08965 at 979.999 kb on - strand, within HMPREF1058_RS08965 at 979.999 kb on - strand, within HMPREF1058_RS08965 at 980.002 kb on + strand, within HMPREF1058_RS08965 at 980.027 kb on - strand, within HMPREF1058_RS08965 at 980.096 kb on + strand, within HMPREF1058_RS08965 at 980.227 kb on - strand, within HMPREF1058_RS08965 at 980.236 kb on - strand, within HMPREF1058_RS08965 at 980.320 kb on + strand, within HMPREF1058_RS08965 at 980.320 kb on + strand, within HMPREF1058_RS08965 at 980.387 kb on + strand, within HMPREF1058_RS08965 at 980.411 kb on + strand, within HMPREF1058_RS08965 at 980.415 kb on + strand, within HMPREF1058_RS08965 at 980.538 kb on + strand, within HMPREF1058_RS08965 at 980.541 kb on - strand, within HMPREF1058_RS08965 at 980.870 kb on + strand at 980.929 kb on - strand at 981.063 kb on - strand at 981.105 kb on + strand at 981.151 kb on + strand at 981.151 kb on + strand at 981.152 kb on - strand at 981.152 kb on - strand at 981.182 kb on + strand at 981.185 kb on + strand at 981.185 kb on + strand at 981.185 kb on + strand at 981.193 kb on + strand at 981.194 kb on - strand at 981.196 kb on - strand at 981.299 kb on + strand at 981.318 kb on + strand at 981.319 kb on - strand at 981.319 kb on - strand at 981.350 kb on - strand, within HMPREF1058_RS08960 at 981.420 kb on + strand, within HMPREF1058_RS08960 at 981.421 kb on - strand, within HMPREF1058_RS08960 at 981.588 kb on + strand, within HMPREF1058_RS08960 at 981.589 kb on - strand, within HMPREF1058_RS08960 at 981.589 kb on - strand, within HMPREF1058_RS08960 at 981.589 kb on - strand, within HMPREF1058_RS08960 at 981.590 kb on + strand, within HMPREF1058_RS08960 at 981.590 kb on + strand, within HMPREF1058_RS08960 at 981.624 kb on + strand, within HMPREF1058_RS08960 at 981.624 kb on + strand at 981.624 kb on + strand, within HMPREF1058_RS08960 at 981.624 kb on + strand, within HMPREF1058_RS08960 at 981.624 kb on + strand, within HMPREF1058_RS08960 at 981.625 kb on - strand, within HMPREF1058_RS08960 at 981.626 kb on + strand, within HMPREF1058_RS08960 at 981.628 kb on + strand, within HMPREF1058_RS08960 at 981.649 kb on - strand, within HMPREF1058_RS08960 at 981.739 kb on + strand, within HMPREF1058_RS08960 at 981.802 kb on - strand, within HMPREF1058_RS08960 at 981.806 kb on + strand, within HMPREF1058_RS08960 at 981.813 kb on - strand, within HMPREF1058_RS08960 at 981.903 kb on - strand, within HMPREF1058_RS08960 at 981.918 kb on + strand, within HMPREF1058_RS08960 at 981.940 kb on + strand, within HMPREF1058_RS08960 at 982.048 kb on - strand, within HMPREF1058_RS08960
Per-strain Table
Position Strand Gene LocusTag Fraction Galactan from Potato 2.5 mg/ml (C) remove 978,187 + HMPREF1058_RS08970 0.19 -0.8 978,351 - HMPREF1058_RS08970 0.38 +0.3 978,402 + HMPREF1058_RS08970 0.44 +0.2 978,562 - HMPREF1058_RS08970 0.63 -0.6 978,632 + HMPREF1058_RS08970 0.72 +1.6 978,676 + HMPREF1058_RS08970 0.77 +1.9 978,676 + HMPREF1058_RS08970 0.77 -1.2 978,676 + HMPREF1058_RS08970 0.77 +0.2 978,709 + HMPREF1058_RS08970 0.81 -1.2 978,909 - -0.1 978,933 - -0.6 978,960 + -0.4 978,961 - -0.3 978,964 + -0.6 978,964 + -2.1 978,964 + -1.6 978,964 + +1.1 978,965 - -0.3 978,979 + -0.2 979,010 + -0.4 979,029 - -0.1 979,058 + -0.1 979,058 + -0.3 979,059 - +0.3 979,059 - +0.3 979,069 - +0.1 979,069 - -0.3 979,069 - -0.4 979,074 + -1.3 979,077 + -1.0 979,082 - -0.8 979,082 - -1.9 979,157 - +1.6 979,205 - -0.4 979,343 + HMPREF1058_RS08965 0.14 +2.5 979,364 + HMPREF1058_RS08965 0.15 -2.8 979,563 + HMPREF1058_RS08965 0.25 +0.6 979,564 - HMPREF1058_RS08965 0.25 +0.1 979,646 - HMPREF1058_RS08965 0.29 +0.0 979,646 - HMPREF1058_RS08965 0.29 -0.8 979,647 + HMPREF1058_RS08965 0.29 +0.7 979,647 + HMPREF1058_RS08965 0.29 -1.8 979,822 + HMPREF1058_RS08965 0.38 -0.2 979,823 - HMPREF1058_RS08965 0.38 -3.0 979,913 - HMPREF1058_RS08965 0.42 -0.9 979,913 - HMPREF1058_RS08965 0.42 -0.4 979,916 + HMPREF1058_RS08965 0.43 -1.1 979,917 - HMPREF1058_RS08965 0.43 +0.3 979,998 + HMPREF1058_RS08965 0.47 +0.1 979,998 + HMPREF1058_RS08965 0.47 -1.5 979,999 - HMPREF1058_RS08965 0.47 -0.3 979,999 - HMPREF1058_RS08965 0.47 -0.4 980,002 + HMPREF1058_RS08965 0.47 -1.0 980,027 - HMPREF1058_RS08965 0.48 -0.4 980,096 + HMPREF1058_RS08965 0.51 +0.0 980,227 - HMPREF1058_RS08965 0.58 -0.1 980,236 - HMPREF1058_RS08965 0.58 -0.8 980,320 + HMPREF1058_RS08965 0.63 -1.4 980,320 + HMPREF1058_RS08965 0.63 -0.5 980,387 + HMPREF1058_RS08965 0.66 -0.3 980,411 + HMPREF1058_RS08965 0.67 +0.0 980,415 + HMPREF1058_RS08965 0.67 -0.9 980,538 + HMPREF1058_RS08965 0.73 -0.4 980,541 - HMPREF1058_RS08965 0.74 -0.2 980,870 + +0.8 980,929 - -1.7 981,063 - +0.1 981,105 + -0.2 981,151 + -2.0 981,151 + -0.7 981,152 - -0.5 981,152 - +0.5 981,182 + -0.4 981,185 + +0.1 981,185 + +0.2 981,185 + -0.2 981,193 + +1.9 981,194 - +0.2 981,196 - -0.5 981,299 + +0.1 981,318 + -0.4 981,319 - -0.0 981,319 - -0.4 981,350 - HMPREF1058_RS08960 0.12 -0.1 981,420 + HMPREF1058_RS08960 0.17 -0.1 981,421 - HMPREF1058_RS08960 0.17 +1.1 981,588 + HMPREF1058_RS08960 0.30 +1.7 981,589 - HMPREF1058_RS08960 0.30 -0.9 981,589 - HMPREF1058_RS08960 0.30 -0.5 981,589 - HMPREF1058_RS08960 0.30 -0.7 981,590 + HMPREF1058_RS08960 0.30 -0.9 981,590 + HMPREF1058_RS08960 0.30 +0.2 981,624 + HMPREF1058_RS08960 0.33 +0.6 981,624 + +1.5 981,624 + HMPREF1058_RS08960 0.33 +3.2 981,624 + HMPREF1058_RS08960 0.33 +0.2 981,624 + HMPREF1058_RS08960 0.33 -0.1 981,625 - HMPREF1058_RS08960 0.33 -1.1 981,626 + HMPREF1058_RS08960 0.33 -0.3 981,628 + HMPREF1058_RS08960 0.33 +0.4 981,649 - HMPREF1058_RS08960 0.35 +1.0 981,739 + HMPREF1058_RS08960 0.42 -0.5 981,802 - HMPREF1058_RS08960 0.46 -0.5 981,806 + HMPREF1058_RS08960 0.47 -0.1 981,813 - HMPREF1058_RS08960 0.47 -0.9 981,903 - HMPREF1058_RS08960 0.54 +1.1 981,918 + HMPREF1058_RS08960 0.55 +0.1 981,940 + HMPREF1058_RS08960 0.57 +1.3 982,048 - HMPREF1058_RS08960 0.65 +0.5
Or see this region's nucleotide sequence