Experiment: Galactan from Potato 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS08945 and HMPREF1058_RS08940 overlap by 4 nucleotides HMPREF1058_RS08940 and HMPREF1058_RS08935 are separated by 54 nucleotides
HMPREF1058_RS08945: HMPREF1058_RS08945 - FecR domain-containing protein, at 985,353 to 986,363
_RS08945
HMPREF1058_RS08940: HMPREF1058_RS08940 - RNA polymerase sigma-70 factor, at 986,360 to 986,887
_RS08940
HMPREF1058_RS08935: HMPREF1058_RS08935 - outer membrane beta-barrel protein, at 986,942 to 989,509
_RS08935
Position (kb) 986
987 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 985.480 kb on + strand, within HMPREF1058_RS08945 at 985.480 kb on + strand, within HMPREF1058_RS08945 at 985.515 kb on + strand, within HMPREF1058_RS08945 at 985.542 kb on + strand, within HMPREF1058_RS08945 at 985.543 kb on - strand, within HMPREF1058_RS08945 at 985.545 kb on - strand, within HMPREF1058_RS08945 at 985.652 kb on + strand, within HMPREF1058_RS08945 at 985.707 kb on - strand, within HMPREF1058_RS08945 at 985.713 kb on + strand, within HMPREF1058_RS08945 at 985.763 kb on - strand, within HMPREF1058_RS08945 at 985.821 kb on + strand, within HMPREF1058_RS08945 at 985.821 kb on + strand, within HMPREF1058_RS08945 at 985.822 kb on - strand, within HMPREF1058_RS08945 at 985.822 kb on - strand, within HMPREF1058_RS08945 at 985.822 kb on - strand, within HMPREF1058_RS08945 at 985.822 kb on - strand, within HMPREF1058_RS08945 at 985.892 kb on + strand, within HMPREF1058_RS08945 at 985.942 kb on - strand, within HMPREF1058_RS08945 at 985.942 kb on - strand, within HMPREF1058_RS08945 at 985.960 kb on - strand, within HMPREF1058_RS08945 at 985.973 kb on + strand, within HMPREF1058_RS08945 at 985.995 kb on + strand, within HMPREF1058_RS08945 at 985.996 kb on - strand, within HMPREF1058_RS08945 at 986.027 kb on + strand, within HMPREF1058_RS08945 at 986.101 kb on - strand, within HMPREF1058_RS08945 at 986.157 kb on - strand, within HMPREF1058_RS08945 at 986.419 kb on + strand, within HMPREF1058_RS08940 at 986.419 kb on + strand, within HMPREF1058_RS08940 at 986.419 kb on + strand, within HMPREF1058_RS08940 at 986.473 kb on - strand, within HMPREF1058_RS08940 at 986.760 kb on - strand, within HMPREF1058_RS08940 at 986.876 kb on + strand at 986.914 kb on + strand at 986.985 kb on + strand at 986.985 kb on + strand at 986.985 kb on + strand at 986.986 kb on - strand at 987.010 kb on + strand at 987.066 kb on + strand at 987.067 kb on - strand at 987.075 kb on - strand at 987.115 kb on + strand at 987.115 kb on + strand at 987.116 kb on - strand at 987.294 kb on + strand, within HMPREF1058_RS08935 at 987.334 kb on + strand, within HMPREF1058_RS08935 at 987.335 kb on - strand, within HMPREF1058_RS08935 at 987.479 kb on - strand, within HMPREF1058_RS08935 at 987.496 kb on + strand, within HMPREF1058_RS08935 at 987.500 kb on + strand, within HMPREF1058_RS08935 at 987.500 kb on + strand, within HMPREF1058_RS08935 at 987.500 kb on + strand, within HMPREF1058_RS08935 at 987.501 kb on - strand, within HMPREF1058_RS08935 at 987.510 kb on + strand, within HMPREF1058_RS08935 at 987.510 kb on + strand, within HMPREF1058_RS08935 at 987.510 kb on + strand, within HMPREF1058_RS08935 at 987.510 kb on + strand, within HMPREF1058_RS08935 at 987.511 kb on - strand, within HMPREF1058_RS08935 at 987.511 kb on - strand, within HMPREF1058_RS08935 at 987.514 kb on + strand, within HMPREF1058_RS08935 at 987.535 kb on - strand, within HMPREF1058_RS08935 at 987.535 kb on - strand, within HMPREF1058_RS08935 at 987.660 kb on - strand, within HMPREF1058_RS08935 at 987.664 kb on + strand, within HMPREF1058_RS08935 at 987.748 kb on + strand, within HMPREF1058_RS08935 at 987.749 kb on - strand, within HMPREF1058_RS08935 at 987.758 kb on - strand, within HMPREF1058_RS08935 at 987.759 kb on + strand, within HMPREF1058_RS08935 at 987.760 kb on - strand, within HMPREF1058_RS08935 at 987.760 kb on - strand, within HMPREF1058_RS08935 at 987.760 kb on - strand, within HMPREF1058_RS08935 at 987.802 kb on - strand, within HMPREF1058_RS08935 at 987.827 kb on + strand, within HMPREF1058_RS08935 at 987.868 kb on - strand, within HMPREF1058_RS08935 at 987.885 kb on + strand, within HMPREF1058_RS08935 at 987.887 kb on + strand, within HMPREF1058_RS08935 at 987.887 kb on + strand, within HMPREF1058_RS08935
Per-strain Table
Position Strand Gene LocusTag Fraction Galactan from Potato 2.5 mg/ml (C) remove 985,480 + HMPREF1058_RS08945 0.13 -0.3 985,480 + HMPREF1058_RS08945 0.13 -2.1 985,515 + HMPREF1058_RS08945 0.16 -2.7 985,542 + HMPREF1058_RS08945 0.19 -2.2 985,543 - HMPREF1058_RS08945 0.19 +0.2 985,545 - HMPREF1058_RS08945 0.19 -0.2 985,652 + HMPREF1058_RS08945 0.30 -0.8 985,707 - HMPREF1058_RS08945 0.35 -0.4 985,713 + HMPREF1058_RS08945 0.36 +0.3 985,763 - HMPREF1058_RS08945 0.41 -0.5 985,821 + HMPREF1058_RS08945 0.46 -0.8 985,821 + HMPREF1058_RS08945 0.46 -2.0 985,822 - HMPREF1058_RS08945 0.46 +0.5 985,822 - HMPREF1058_RS08945 0.46 +0.1 985,822 - HMPREF1058_RS08945 0.46 -1.2 985,822 - HMPREF1058_RS08945 0.46 +0.5 985,892 + HMPREF1058_RS08945 0.53 -0.2 985,942 - HMPREF1058_RS08945 0.58 -1.1 985,942 - HMPREF1058_RS08945 0.58 -0.9 985,960 - HMPREF1058_RS08945 0.60 -1.8 985,973 + HMPREF1058_RS08945 0.61 +0.0 985,995 + HMPREF1058_RS08945 0.64 -0.3 985,996 - HMPREF1058_RS08945 0.64 -1.1 986,027 + HMPREF1058_RS08945 0.67 -0.5 986,101 - HMPREF1058_RS08945 0.74 -0.3 986,157 - HMPREF1058_RS08945 0.80 +0.3 986,419 + HMPREF1058_RS08940 0.11 +0.5 986,419 + HMPREF1058_RS08940 0.11 +0.1 986,419 + HMPREF1058_RS08940 0.11 -1.7 986,473 - HMPREF1058_RS08940 0.21 +0.5 986,760 - HMPREF1058_RS08940 0.76 +1.0 986,876 + +1.7 986,914 + +0.0 986,985 + +0.2 986,985 + -0.1 986,985 + -0.4 986,986 - +0.5 987,010 + -1.1 987,066 + +1.4 987,067 - -0.0 987,075 - -0.1 987,115 + -0.2 987,115 + -0.8 987,116 - -0.4 987,294 + HMPREF1058_RS08935 0.14 -0.8 987,334 + HMPREF1058_RS08935 0.15 -2.3 987,335 - HMPREF1058_RS08935 0.15 +0.3 987,479 - HMPREF1058_RS08935 0.21 -0.1 987,496 + HMPREF1058_RS08935 0.22 -0.4 987,500 + HMPREF1058_RS08935 0.22 +0.2 987,500 + HMPREF1058_RS08935 0.22 +1.4 987,500 + HMPREF1058_RS08935 0.22 +0.1 987,501 - HMPREF1058_RS08935 0.22 -0.0 987,510 + HMPREF1058_RS08935 0.22 -2.2 987,510 + HMPREF1058_RS08935 0.22 -0.4 987,510 + HMPREF1058_RS08935 0.22 -0.1 987,510 + HMPREF1058_RS08935 0.22 +0.8 987,511 - HMPREF1058_RS08935 0.22 +0.1 987,511 - HMPREF1058_RS08935 0.22 -2.3 987,514 + HMPREF1058_RS08935 0.22 -0.9 987,535 - HMPREF1058_RS08935 0.23 -2.2 987,535 - HMPREF1058_RS08935 0.23 +0.1 987,660 - HMPREF1058_RS08935 0.28 -0.9 987,664 + HMPREF1058_RS08935 0.28 -1.3 987,748 + HMPREF1058_RS08935 0.31 -1.3 987,749 - HMPREF1058_RS08935 0.31 +0.4 987,758 - HMPREF1058_RS08935 0.32 +2.9 987,759 + HMPREF1058_RS08935 0.32 +0.1 987,760 - HMPREF1058_RS08935 0.32 +0.0 987,760 - HMPREF1058_RS08935 0.32 -0.1 987,760 - HMPREF1058_RS08935 0.32 +0.5 987,802 - HMPREF1058_RS08935 0.33 +0.8 987,827 + HMPREF1058_RS08935 0.34 -1.2 987,868 - HMPREF1058_RS08935 0.36 -0.3 987,885 + HMPREF1058_RS08935 0.37 +0.1 987,887 + HMPREF1058_RS08935 0.37 -0.8 987,887 + HMPREF1058_RS08935 0.37 -0.5
Or see this region's nucleotide sequence