Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS08500

Experiment: Galactan from Potato 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Galactan from Potato 2.5 mg/ml (C)
1,126,438	-				+0.3
1,126,440	-				+0.3
1,126,447	-				-2.3
1,126,613	+				+0.1
1,126,613	+				+1.7
1,126,626	+				+1.0
1,126,725	+		HMPREF1058_RS08500	0.26	-0.1
1,126,725	+		HMPREF1058_RS08500	0.26	+0.4
1,126,726	-		HMPREF1058_RS08500	0.26	-2.0
1,126,893	+		HMPREF1058_RS08500	0.73	+2.3
1,127,136	+		HMPREF1058_RS08495	0.24	-0.3
1,127,137	-		HMPREF1058_RS08495	0.24	-1.2
1,127,139	-		HMPREF1058_RS08495	0.25	-0.5
1,127,139	-		HMPREF1058_RS08495	0.25	-0.7
1,127,224	+		HMPREF1058_RS08495	0.37	+0.4
1,127,360	+		HMPREF1058_RS08495	0.56	-1.4
1,127,361	-		HMPREF1058_RS08495	0.56	-0.1
1,127,546	+		HMPREF1058_RS08495	0.83	-0.8
1,127,546	+		HMPREF1058_RS08495	0.83	+1.3
1,127,547	-		HMPREF1058_RS08495	0.83	-2.4
1,127,547	-		HMPREF1058_RS08495	0.83	-0.1
1,127,580	+		HMPREF1058_RS08495	0.88	-0.3
1,127,581	-		HMPREF1058_RS08495	0.88	-0.2
1,127,647	+				-0.0
1,127,685	+				-1.0
1,127,687	+				+0.2
1,127,688	-				+0.5
1,127,711	+				+0.3
1,127,735	-				+0.3
1,127,817	+				+0.3
1,127,821	+				+0.5
1,127,821	+				+0.4
1,127,822	-				-2.2
1,127,822	-				-0.3
1,127,822	-				+0.6
1,127,882	-				-0.3
1,127,887	-				-0.9
1,127,906	+				+1.1
1,127,931	-				+0.8