Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS08205

Experiment: Galactan from Potato 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Galactan from Potato 2.5 mg/ml (C)
9,328	+		HMPREF1058_RS08210	0.54	-1.6
9,331	-		HMPREF1058_RS08210	0.54	-0.6
9,335	-		HMPREF1058_RS08210	0.54	-0.9
9,338	+		HMPREF1058_RS08210	0.55	+0.5
9,338	+		HMPREF1058_RS08210	0.55	-1.2
9,361	-		HMPREF1058_RS08210	0.56	+0.0
9,375	+		HMPREF1058_RS08210	0.57	+0.6
9,381	+		HMPREF1058_RS08210	0.57	+1.0
9,414	+		HMPREF1058_RS08210	0.59	-1.5
9,416	+		HMPREF1058_RS08210	0.59	-0.9
9,531	+		HMPREF1058_RS08210	0.65	-1.1
9,531	+		HMPREF1058_RS08210	0.65	+0.6
9,532	-		HMPREF1058_RS08210	0.65	+0.3
9,532	-		HMPREF1058_RS08210	0.65	+0.9
9,559	-				+1.0
9,626	-		HMPREF1058_RS08210	0.70	-1.3
9,697	-		HMPREF1058_RS08210	0.74	+1.0
9,700	-		HMPREF1058_RS08210	0.74	-0.0
9,709	-		HMPREF1058_RS08210	0.75	-1.4
9,810	+		HMPREF1058_RS08210	0.80	+2.3
9,824	+		HMPREF1058_RS08210	0.81	-1.0
9,825	-		HMPREF1058_RS08210	0.81	+0.3
9,825	-		HMPREF1058_RS08210	0.81	+0.4
9,826	+		HMPREF1058_RS08210	0.81	-1.8
9,826	+		HMPREF1058_RS08210	0.81	-1.2
9,827	-		HMPREF1058_RS08210	0.81	-0.9
9,829	+		HMPREF1058_RS08210	0.81	-0.4
9,832	-		HMPREF1058_RS08210	0.82	+1.8
9,834	-		HMPREF1058_RS08210	0.82	-1.1
9,834	-		HMPREF1058_RS08210	0.82	-0.5
9,834	-		HMPREF1058_RS08210	0.82	-0.7
9,861	+		HMPREF1058_RS08210	0.83	-0.5
9,903	+		HMPREF1058_RS08210	0.85	+0.4
9,904	-		HMPREF1058_RS08210	0.86	+0.2
9,904	-		HMPREF1058_RS08210	0.86	-0.9
9,904	-		HMPREF1058_RS08210	0.86	+2.0
9,917	+		HMPREF1058_RS08210	0.86	-1.5
9,917	+		HMPREF1058_RS08210	0.86	+0.4
9,918	-		HMPREF1058_RS08210	0.86	-1.3
9,918	-		HMPREF1058_RS08210	0.86	-1.9
10,033	-				-0.9
10,085	-				+0.2
10,085	-				+0.3
10,108	-				-2.9
10,120	-				+1.6
10,165	+				+0.3
10,174	+				+0.6
10,180	-				+1.3
10,183	-				-1.3
10,186	-				+0.0
10,188	-				+0.3
10,188	-				-2.9
10,191	-				+0.7
10,225	+				-1.0
10,227	+				-1.1
10,230	+				-0.6
10,231	-				+0.6
10,260	+				+0.5
10,274	+				+0.3
10,275	-				-0.2
10,282	-				+0.3
10,290	-				-0.6
10,305	-				+0.5
10,308	+				-0.5
10,308	+				-0.0
10,315	+				+0.9
10,331	+				-1.1
10,331	+				+1.5
10,332	-				-0.6
10,333	+				-1.4
10,334	-				-1.3
10,335	+				+0.6
10,335	+				+0.1
10,341	+				-1.2
10,354	-				-2.2
10,420	+				-1.3
10,516	+		HMPREF1058_RS08205	0.10	+0.9
10,517	-		HMPREF1058_RS08205	0.10	-0.7
10,517	-		HMPREF1058_RS08205	0.10	+0.6
10,540	-		HMPREF1058_RS08205	0.11	+0.0
10,584	+		HMPREF1058_RS08205	0.14	+0.1
10,584	+		HMPREF1058_RS08205	0.14	-0.7
10,584	+		HMPREF1058_RS08205	0.14	+1.1
10,584	+		HMPREF1058_RS08205	0.14	-0.6
10,584	+		HMPREF1058_RS08205	0.14	-0.4
10,585	-		HMPREF1058_RS08205	0.14	-0.0
10,585	-		HMPREF1058_RS08205	0.14	+1.4
10,585	-		HMPREF1058_RS08205	0.14	+0.1
10,598	-		HMPREF1058_RS08205	0.14	+0.8
10,598	-				-0.9
10,606	-		HMPREF1058_RS08205	0.15	+0.2
10,678	-		HMPREF1058_RS08205	0.19	+0.8
10,678	-		HMPREF1058_RS08205	0.19	-1.2
10,686	-		HMPREF1058_RS08205	0.19	+0.1
10,763	-		HMPREF1058_RS08205	0.23	-2.5
10,889	+		HMPREF1058_RS08205	0.29	+0.1
10,889	+		HMPREF1058_RS08205	0.29	+0.5
10,893	+		HMPREF1058_RS08205	0.30	-1.1
10,894	-		HMPREF1058_RS08205	0.30	-0.5
10,922	+		HMPREF1058_RS08205	0.31	+0.5
10,922	+		HMPREF1058_RS08205	0.31	-1.2
10,923	-		HMPREF1058_RS08205	0.31	-1.0
10,982	+		HMPREF1058_RS08205	0.34	+0.9
10,999	+		HMPREF1058_RS08205	0.35	-0.4
11,000	-		HMPREF1058_RS08205	0.35	+0.9
11,014	+		HMPREF1058_RS08205	0.36	-0.5
11,033	-		HMPREF1058_RS08205	0.37	-1.0
11,045	-				+1.0
11,059	-		HMPREF1058_RS08205	0.38	+0.4
11,101	+		HMPREF1058_RS08205	0.40	+1.8
11,113	+		HMPREF1058_RS08205	0.41	-1.6
11,214	-		HMPREF1058_RS08205	0.46	-0.7
11,269	+		HMPREF1058_RS08205	0.49	+0.5
11,269	+		HMPREF1058_RS08205	0.49	-0.0
11,270	-		HMPREF1058_RS08205	0.49	-0.7
11,283	+		HMPREF1058_RS08205	0.50	+0.6
11,293	+		HMPREF1058_RS08205	0.50	-0.5
11,358	+		HMPREF1058_RS08205	0.54	-1.6
11,359	-		HMPREF1058_RS08205	0.54	+1.1
11,359	-		HMPREF1058_RS08205	0.54	+0.2
11,392	-		HMPREF1058_RS08205	0.55	-1.3
11,392	-		HMPREF1058_RS08205	0.55	-1.1
11,481	+		HMPREF1058_RS08205	0.60	+0.1
11,481	+		HMPREF1058_RS08205	0.60	-0.4
11,482	-		HMPREF1058_RS08205	0.60	+0.2
11,482	-		HMPREF1058_RS08205	0.60	+1.3
11,578	+		HMPREF1058_RS08205	0.65	-1.8
11,578	+		HMPREF1058_RS08205	0.65	+0.4
11,578	+		HMPREF1058_RS08205	0.65	+0.4
11,645	-		HMPREF1058_RS08205	0.69	-1.3
11,645	-		HMPREF1058_RS08205	0.69	+0.1
11,650	+		HMPREF1058_RS08205	0.69	+1.0
11,691	-		HMPREF1058_RS08205	0.71	-0.6
11,692	+		HMPREF1058_RS08205	0.71	+0.4
11,743	+		HMPREF1058_RS08205	0.74	+0.5
11,743	+		HMPREF1058_RS08205	0.74	+0.5
11,764	+		HMPREF1058_RS08205	0.75	-1.0
11,832	-		HMPREF1058_RS08205	0.78	-0.1
11,834	-		HMPREF1058_RS08205	0.78	+0.4
11,837	+		HMPREF1058_RS08205	0.78	+2.6
11,837	+		HMPREF1058_RS08205	0.78	+0.9
11,837	+		HMPREF1058_RS08205	0.78	-0.6
11,837	+		HMPREF1058_RS08205	0.78	-1.3
11,837	+		HMPREF1058_RS08205	0.78	+0.2
11,838	-		HMPREF1058_RS08205	0.79	-0.7
11,838	-		HMPREF1058_RS08205	0.79	+0.9
11,843	+				+1.6
11,848	+		HMPREF1058_RS08205	0.79	+0.3
11,898	+		HMPREF1058_RS08205	0.82	-0.0
11,898	+		HMPREF1058_RS08205	0.82	-0.4
11,899	-		HMPREF1058_RS08205	0.82	-1.0
11,902	+		HMPREF1058_RS08205	0.82	+0.0
11,954	-		HMPREF1058_RS08205	0.84	+1.4
11,956	+		HMPREF1058_RS08205	0.85	-0.2
11,957	-		HMPREF1058_RS08205	0.85	-1.3
12,021	+		HMPREF1058_RS08205	0.88	+0.6
12,021	+		HMPREF1058_RS08205	0.88	-1.1
12,059	+		HMPREF1058_RS08205	0.90	+0.7
12,060	-				-0.4
12,106	+				+0.6
12,124	+				-0.3
12,233	+				+2.0
12,311	+				+0.3
12,312	-				+1.9
12,356	+				+2.6
12,626	+		HMPREF1058_RS08200	0.11	-0.1
12,706	-		HMPREF1058_RS08200	0.13	+1.6
12,732	+		HMPREF1058_RS08200	0.14	+2.1
12,736	+		HMPREF1058_RS08200	0.14	+0.6
12,737	-		HMPREF1058_RS08200	0.14	-1.1
12,775	-		HMPREF1058_RS08200	0.15	+0.8
12,775	-		HMPREF1058_RS08200	0.15	-1.7
12,825	+		HMPREF1058_RS08200	0.17	-0.8
12,872	-		HMPREF1058_RS08200	0.18	+2.6
12,872	-		HMPREF1058_RS08200	0.18	-1.1
12,912	+		HMPREF1058_RS08200	0.19	+1.8
12,932	-		HMPREF1058_RS08200	0.20	+0.5
12,968	-		HMPREF1058_RS08200	0.21	-0.4
12,993	-		HMPREF1058_RS08200	0.22	-0.8
13,021	-		HMPREF1058_RS08200	0.23	-0.2
13,021	-		HMPREF1058_RS08200	0.23	-1.1
13,034	+		HMPREF1058_RS08200	0.23	-0.1
13,035	-		HMPREF1058_RS08200	0.23	-0.2
13,087	+		HMPREF1058_RS08200	0.24	-0.0
13,088	-		HMPREF1058_RS08200	0.24	+0.4
13,152	+		HMPREF1058_RS08200	0.26	-0.3
13,152	+		HMPREF1058_RS08200	0.26	-0.4
13,152	+		HMPREF1058_RS08200	0.26	-0.7
13,153	-		HMPREF1058_RS08200	0.26	-0.2
13,153	-		HMPREF1058_RS08200	0.26	-2.2
13,234	+		HMPREF1058_RS08200	0.29	-1.7
13,235	-		HMPREF1058_RS08200	0.29	+0.4
13,235	-		HMPREF1058_RS08200	0.29	+0.5
13,235	-		HMPREF1058_RS08200	0.29	-0.5
13,237	-		HMPREF1058_RS08200	0.29	+1.6
13,237	-		HMPREF1058_RS08200	0.29	+0.7
13,237	-		HMPREF1058_RS08200	0.29	+0.8