Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS08115

Experiment: Galactan from Potato 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Galactan from Potato 2.5 mg/ml (C)
46,716	-		HMPREF1058_RS08120	0.70	-1.2
46,724	-		HMPREF1058_RS08120	0.70	+0.7
46,754	+		HMPREF1058_RS08120	0.71	-0.9
46,755	-		HMPREF1058_RS08120	0.71	-1.4
46,771	-		HMPREF1058_RS08120	0.72	-1.5
46,774	+		HMPREF1058_RS08120	0.72	+2.0
46,775	-		HMPREF1058_RS08120	0.72	+2.1
46,922	-		HMPREF1058_RS08120	0.78	+1.1
46,933	+		HMPREF1058_RS08120	0.78	+0.3
46,934	-		HMPREF1058_RS08120	0.78	+0.6
47,002	+		HMPREF1058_RS08120	0.81	+0.3
47,003	-		HMPREF1058_RS08120	0.81	-0.4
47,011	+		HMPREF1058_RS08120	0.81	+1.6
47,038	+		HMPREF1058_RS08120	0.82	-0.5
47,129	-		HMPREF1058_RS08120	0.85	-0.5
47,292	+				+1.6
47,301	+				-1.3
47,333	+				+1.0
47,366	-				+1.1
47,395	-				+0.2
47,395	-				+1.6
47,395	-				-2.3
47,395	-				+1.7
47,396	+				-0.2
47,409	-				+1.1
47,429	+				-0.8
47,496	-				-0.0
47,583	+				-1.7
47,584	-				+0.1
47,633	-				+2.5
47,674	-				-0.1
47,678	+				+0.9
47,719	+				-2.1
47,806	-				-0.3
47,806	-				+1.6
47,820	-				-0.2
47,875	+		HMPREF1058_RS08115	0.11	+0.2
47,876	-		HMPREF1058_RS08115	0.11	-1.3
47,914	-		HMPREF1058_RS08115	0.13	-1.3
48,001	+		HMPREF1058_RS08115	0.18	-0.0
48,001	+		HMPREF1058_RS08115	0.18	-0.7
48,001	+		HMPREF1058_RS08115	0.18	-0.4
48,002	-		HMPREF1058_RS08115	0.18	-1.0
48,021	-		HMPREF1058_RS08115	0.19	+0.4
48,039	-		HMPREF1058_RS08115	0.20	-1.1
48,065	+		HMPREF1058_RS08115	0.21	-1.2
48,176	+		HMPREF1058_RS08115	0.27	-1.0
48,179	-		HMPREF1058_RS08115	0.27	-0.9
48,380	-		HMPREF1058_RS08115	0.37	+0.4
48,398	+		HMPREF1058_RS08115	0.38	-0.7
48,445	+		HMPREF1058_RS08115	0.41	-0.0
48,491	-		HMPREF1058_RS08115	0.43	+0.6
48,572	-		HMPREF1058_RS08115	0.47	+2.6
48,574	+		HMPREF1058_RS08115	0.47	+0.8
48,623	-		HMPREF1058_RS08115	0.50	+0.4
48,623	-		HMPREF1058_RS08115	0.50	-0.4
48,629	+		HMPREF1058_RS08115	0.50	-0.6
48,631	+		HMPREF1058_RS08115	0.50	-0.5
48,632	-		HMPREF1058_RS08115	0.50	-1.2
48,653	+		HMPREF1058_RS08115	0.52	-0.2
48,653	+		HMPREF1058_RS08115	0.52	-1.7
48,653	+		HMPREF1058_RS08115	0.52	-0.6
48,654	-		HMPREF1058_RS08115	0.52	+0.6
48,654	-		HMPREF1058_RS08115	0.52	+0.8
48,655	+		HMPREF1058_RS08115	0.52	+0.6
48,656	-		HMPREF1058_RS08115	0.52	-0.3
48,664	+		HMPREF1058_RS08115	0.52	-0.4
48,665	-		HMPREF1058_RS08115	0.52	-1.1
49,036	+		HMPREF1058_RS08115	0.71	-1.3
49,169	-		HMPREF1058_RS08115	0.78	+0.6
49,285	+		HMPREF1058_RS08115	0.84	+0.2
49,286	-		HMPREF1058_RS08115	0.84	+1.0
49,287	+		HMPREF1058_RS08115	0.84	+0.6
49,287	+		HMPREF1058_RS08115	0.84	-2.3
49,287	+		HMPREF1058_RS08115	0.84	-0.0
49,288	-		HMPREF1058_RS08115	0.84	-0.7
49,288	-		HMPREF1058_RS08115	0.84	-0.4
49,291	+		HMPREF1058_RS08115	0.84	-1.7
49,323	+		HMPREF1058_RS08115	0.86	-0.9
49,378	-		HMPREF1058_RS08115	0.89	-0.1
49,395	-		HMPREF1058_RS08115	0.90	-0.4
49,409	+				-1.2
49,562	+				-3.1
49,572	-				+1.3
49,584	+				-1.9
49,590	-				-1.0
49,637	+				-3.4
49,638	-				+1.0
49,647	-				+0.2
49,666	-				+0.2
49,732	-				+0.8
49,741	-				-0.2
49,762	+				-0.9
49,822	-				-1.4
49,850	+				+0.1
49,851	-				+0.2
49,855	+				-1.0
49,864	+				+0.5
50,075	-		HMPREF1058_RS08110	0.20	+1.0
50,129	-		HMPREF1058_RS08110	0.23	+0.3
50,343	+		HMPREF1058_RS08110	0.36	+0.6
50,378	-		HMPREF1058_RS08110	0.38	+0.3
50,380	+		HMPREF1058_RS08110	0.38	-0.2
50,381	-		HMPREF1058_RS08110	0.39	+0.3
50,382	+		HMPREF1058_RS08110	0.39	-2.1
50,393	-		HMPREF1058_RS08110	0.39	+0.0
50,393	-		HMPREF1058_RS08110	0.39	+0.6