Experiment: Galactan from Potato 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS07955 and HMPREF1058_RS07950 are separated by 150 nucleotides HMPREF1058_RS07950 and HMPREF1058_RS07945 are separated by 71 nucleotides HMPREF1058_RS07945 and HMPREF1058_RS07940 are separated by 14 nucleotides HMPREF1058_RS07940 and HMPREF1058_RS07935 are separated by 6 nucleotides
HMPREF1058_RS07955: HMPREF1058_RS07955 - phosphoribosylformylglycinamidine synthase, at 93,308 to 97,012
_RS07955
HMPREF1058_RS07950: HMPREF1058_RS07950 - LysE family translocator, at 97,163 to 97,822
_RS07950
HMPREF1058_RS07945: HMPREF1058_RS07945 - DUF4924 family protein, at 97,894 to 98,436
_RS07945
HMPREF1058_RS07940: HMPREF1058_RS07940 - dTDP-4-dehydrorhamnose reductase, at 98,451 to 99,308
_RS07940
HMPREF1058_RS07935: HMPREF1058_RS07935 - peptide chain release factor 3, at 99,315 to 100,883
_RS07935
Position (kb) 97
98
99 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 96.900 kb on - strand at 96.977 kb on + strand at 96.977 kb on + strand at 96.978 kb on - strand at 97.021 kb on + strand at 97.022 kb on - strand at 97.067 kb on - strand at 97.069 kb on + strand at 97.090 kb on + strand at 97.090 kb on - strand at 97.090 kb on - strand at 97.122 kb on + strand at 97.122 kb on + strand at 97.126 kb on + strand at 97.132 kb on + strand at 97.833 kb on + strand at 97.833 kb on + strand at 97.943 kb on + strand at 97.945 kb on + strand at 97.945 kb on + strand at 97.945 kb on + strand at 97.945 kb on + strand at 97.945 kb on + strand at 97.945 kb on + strand at 97.947 kb on + strand at 97.947 kb on + strand at 97.947 kb on + strand at 97.989 kb on + strand, within HMPREF1058_RS07945 at 98.015 kb on + strand, within HMPREF1058_RS07945 at 98.141 kb on + strand, within HMPREF1058_RS07945 at 98.197 kb on + strand, within HMPREF1058_RS07945 at 98.199 kb on + strand, within HMPREF1058_RS07945 at 98.209 kb on + strand, within HMPREF1058_RS07945 at 98.229 kb on + strand, within HMPREF1058_RS07945 at 98.304 kb on + strand, within HMPREF1058_RS07945 at 98.309 kb on + strand, within HMPREF1058_RS07945 at 98.309 kb on + strand, within HMPREF1058_RS07945 at 98.398 kb on + strand at 98.401 kb on + strand at 98.401 kb on + strand at 98.401 kb on + strand at 98.403 kb on + strand at 98.405 kb on + strand at 98.405 kb on + strand at 98.405 kb on + strand at 99.287 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Galactan from Potato 2.5 mg/ml (C) remove 96,900 - -2.6 96,977 + -2.8 96,977 + -2.5 96,978 - +0.3 97,021 + -0.7 97,022 - -1.5 97,067 - -2.1 97,069 + -1.9 97,090 + +0.3 97,090 - -0.3 97,090 - -0.7 97,122 + -0.3 97,122 + +0.4 97,126 + +1.7 97,132 + +0.1 97,833 + -0.3 97,833 + +1.3 97,943 + +1.8 97,945 + +0.4 97,945 + -0.0 97,945 + +1.3 97,945 + +1.3 97,945 + +0.9 97,945 + +0.9 97,947 + +0.7 97,947 + +0.9 97,947 + +0.5 97,989 + HMPREF1058_RS07945 0.17 +2.8 98,015 + HMPREF1058_RS07945 0.22 +0.3 98,141 + HMPREF1058_RS07945 0.45 +0.0 98,197 + HMPREF1058_RS07945 0.56 +1.4 98,199 + HMPREF1058_RS07945 0.56 +0.2 98,209 + HMPREF1058_RS07945 0.58 -0.2 98,229 + HMPREF1058_RS07945 0.62 -0.3 98,304 + HMPREF1058_RS07945 0.76 +1.0 98,309 + HMPREF1058_RS07945 0.76 +1.5 98,309 + HMPREF1058_RS07945 0.76 +1.6 98,398 + +0.3 98,401 + +0.5 98,401 + -2.0 98,401 + -0.5 98,403 + -0.4 98,405 + +0.2 98,405 + -1.3 98,405 + -0.3 99,287 + -3.9
Or see this region's nucleotide sequence