Experiment: Galactan from Potato 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS07930 and HMPREF1058_RS07925 are separated by 106 nucleotides HMPREF1058_RS07925 and HMPREF1058_RS07920 overlap by 18 nucleotides HMPREF1058_RS07920 and HMPREF1058_RS07915 are separated by 296 nucleotides
HMPREF1058_RS07930: HMPREF1058_RS07930 - TerB family tellurite resistance protein, at 100,958 to 101,740
_RS07930
HMPREF1058_RS07925: HMPREF1058_RS07925 - dihydrofolate reductase, at 101,847 to 102,731
_RS07925
HMPREF1058_RS07920: HMPREF1058_RS07920 - DUF108 domain-containing protein, at 102,714 to 103,502
_RS07920
HMPREF1058_RS07915: HMPREF1058_RS07915 - hypothetical protein, at 103,799 to 104,878
_RS07915
Position (kb) 102
103
104 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 101.819 kb on + strand at 101.846 kb on + strand at 101.870 kb on - strand at 101.870 kb on - strand at 101.870 kb on - strand at 101.933 kb on + strand at 101.937 kb on + strand, within HMPREF1058_RS07925 at 101.999 kb on - strand, within HMPREF1058_RS07925 at 102.012 kb on - strand, within HMPREF1058_RS07925 at 102.033 kb on - strand, within HMPREF1058_RS07925 at 102.068 kb on + strand, within HMPREF1058_RS07925 at 102.084 kb on + strand, within HMPREF1058_RS07925 at 102.137 kb on + strand, within HMPREF1058_RS07925 at 102.178 kb on + strand, within HMPREF1058_RS07925 at 102.178 kb on + strand, within HMPREF1058_RS07925 at 102.183 kb on + strand, within HMPREF1058_RS07925 at 102.184 kb on - strand, within HMPREF1058_RS07925 at 102.188 kb on - strand, within HMPREF1058_RS07925 at 102.188 kb on - strand, within HMPREF1058_RS07925 at 102.188 kb on - strand, within HMPREF1058_RS07925 at 102.280 kb on + strand, within HMPREF1058_RS07925 at 102.280 kb on + strand, within HMPREF1058_RS07925 at 102.280 kb on + strand, within HMPREF1058_RS07925 at 102.302 kb on + strand, within HMPREF1058_RS07925 at 102.303 kb on - strand, within HMPREF1058_RS07925 at 102.345 kb on + strand, within HMPREF1058_RS07925 at 102.345 kb on + strand, within HMPREF1058_RS07925 at 102.346 kb on - strand, within HMPREF1058_RS07925 at 102.346 kb on - strand, within HMPREF1058_RS07925 at 102.497 kb on + strand, within HMPREF1058_RS07925 at 102.506 kb on - strand, within HMPREF1058_RS07925 at 102.509 kb on - strand, within HMPREF1058_RS07925 at 102.595 kb on + strand, within HMPREF1058_RS07925 at 102.595 kb on + strand, within HMPREF1058_RS07925 at 102.645 kb on - strand at 102.652 kb on + strand at 102.720 kb on + strand at 102.791 kb on - strand at 102.799 kb on - strand, within HMPREF1058_RS07920 at 102.811 kb on - strand, within HMPREF1058_RS07920 at 102.811 kb on - strand, within HMPREF1058_RS07920 at 102.930 kb on + strand, within HMPREF1058_RS07920 at 102.931 kb on - strand, within HMPREF1058_RS07920 at 102.931 kb on - strand, within HMPREF1058_RS07920 at 102.931 kb on - strand, within HMPREF1058_RS07920 at 102.952 kb on - strand, within HMPREF1058_RS07920 at 103.067 kb on + strand, within HMPREF1058_RS07920 at 103.068 kb on - strand, within HMPREF1058_RS07920 at 103.203 kb on + strand, within HMPREF1058_RS07920 at 103.404 kb on + strand, within HMPREF1058_RS07920 at 103.404 kb on + strand, within HMPREF1058_RS07920 at 103.410 kb on + strand, within HMPREF1058_RS07920 at 103.483 kb on - strand at 103.483 kb on - strand at 103.485 kb on + strand at 103.486 kb on - strand at 103.557 kb on + strand at 103.567 kb on + strand at 103.580 kb on - strand at 103.620 kb on + strand at 103.624 kb on - strand at 103.636 kb on - strand at 103.694 kb on - strand at 103.705 kb on - strand at 103.757 kb on - strand at 103.784 kb on - strand at 103.815 kb on + strand at 103.815 kb on + strand at 103.815 kb on + strand at 103.816 kb on - strand at 103.816 kb on - strand at 103.816 kb on - strand at 103.819 kb on - strand at 103.893 kb on + strand at 103.975 kb on + strand, within HMPREF1058_RS07915 at 104.034 kb on - strand, within HMPREF1058_RS07915 at 104.034 kb on - strand, within HMPREF1058_RS07915 at 104.044 kb on + strand, within HMPREF1058_RS07915 at 104.044 kb on + strand, within HMPREF1058_RS07915 at 104.045 kb on - strand, within HMPREF1058_RS07915 at 104.287 kb on + strand, within HMPREF1058_RS07915 at 104.363 kb on - strand, within HMPREF1058_RS07915 at 104.377 kb on - strand, within HMPREF1058_RS07915 at 104.444 kb on - strand, within HMPREF1058_RS07915
Per-strain Table
Position Strand Gene LocusTag Fraction Galactan from Potato 2.5 mg/ml (C) remove 101,819 + +0.8 101,846 + +4.4 101,870 - -0.9 101,870 - -0.6 101,870 - +0.5 101,933 + -0.3 101,937 + HMPREF1058_RS07925 0.10 -1.7 101,999 - HMPREF1058_RS07925 0.17 +0.4 102,012 - HMPREF1058_RS07925 0.19 +2.6 102,033 - HMPREF1058_RS07925 0.21 -0.4 102,068 + HMPREF1058_RS07925 0.25 -0.3 102,084 + HMPREF1058_RS07925 0.27 +1.4 102,137 + HMPREF1058_RS07925 0.33 -1.2 102,178 + HMPREF1058_RS07925 0.37 +0.7 102,178 + HMPREF1058_RS07925 0.37 -2.7 102,183 + HMPREF1058_RS07925 0.38 +1.2 102,184 - HMPREF1058_RS07925 0.38 -0.4 102,188 - HMPREF1058_RS07925 0.39 +1.8 102,188 - HMPREF1058_RS07925 0.39 -0.0 102,188 - HMPREF1058_RS07925 0.39 +0.4 102,280 + HMPREF1058_RS07925 0.49 -0.2 102,280 + HMPREF1058_RS07925 0.49 +1.5 102,280 + HMPREF1058_RS07925 0.49 -1.5 102,302 + HMPREF1058_RS07925 0.51 +1.7 102,303 - HMPREF1058_RS07925 0.52 +0.1 102,345 + HMPREF1058_RS07925 0.56 -0.0 102,345 + HMPREF1058_RS07925 0.56 -1.2 102,346 - HMPREF1058_RS07925 0.56 -0.2 102,346 - HMPREF1058_RS07925 0.56 +1.4 102,497 + HMPREF1058_RS07925 0.73 -0.4 102,506 - HMPREF1058_RS07925 0.74 -0.6 102,509 - HMPREF1058_RS07925 0.75 +0.5 102,595 + HMPREF1058_RS07925 0.85 +0.2 102,595 + HMPREF1058_RS07925 0.85 +0.4 102,645 - -0.9 102,652 + +1.3 102,720 + +2.6 102,791 - +0.4 102,799 - HMPREF1058_RS07920 0.11 +0.8 102,811 - HMPREF1058_RS07920 0.12 +1.1 102,811 - HMPREF1058_RS07920 0.12 +0.3 102,930 + HMPREF1058_RS07920 0.27 +1.3 102,931 - HMPREF1058_RS07920 0.28 +1.1 102,931 - HMPREF1058_RS07920 0.28 +1.0 102,931 - HMPREF1058_RS07920 0.28 +1.9 102,952 - HMPREF1058_RS07920 0.30 +0.8 103,067 + HMPREF1058_RS07920 0.45 +0.6 103,068 - HMPREF1058_RS07920 0.45 +0.6 103,203 + HMPREF1058_RS07920 0.62 +2.0 103,404 + HMPREF1058_RS07920 0.87 +2.9 103,404 + HMPREF1058_RS07920 0.87 -1.3 103,410 + HMPREF1058_RS07920 0.88 +1.0 103,483 - -1.3 103,483 - +1.0 103,485 + +0.3 103,486 - -0.8 103,557 + -1.1 103,567 + -0.9 103,580 - -1.6 103,620 + +0.2 103,624 - -2.7 103,636 - +1.1 103,694 - -1.3 103,705 - -3.0 103,757 - -0.3 103,784 - -3.3 103,815 + +0.7 103,815 + -0.7 103,815 + +2.2 103,816 - -1.0 103,816 - -1.3 103,816 - +0.3 103,819 - +1.2 103,893 + -0.2 103,975 + HMPREF1058_RS07915 0.16 +2.1 104,034 - HMPREF1058_RS07915 0.22 +0.3 104,034 - HMPREF1058_RS07915 0.22 -0.2 104,044 + HMPREF1058_RS07915 0.23 -0.4 104,044 + HMPREF1058_RS07915 0.23 +0.6 104,045 - HMPREF1058_RS07915 0.23 +0.5 104,287 + HMPREF1058_RS07915 0.45 +0.4 104,363 - HMPREF1058_RS07915 0.52 -0.9 104,377 - HMPREF1058_RS07915 0.54 +0.3 104,444 - HMPREF1058_RS07915 0.60 +2.5
Or see this region's nucleotide sequence