Experiment: Galactan from Potato 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS07660 and HMPREF1058_RS07655 are separated by 139 nucleotides HMPREF1058_RS07655 and HMPREF1058_RS07650 are separated by 108 nucleotides HMPREF1058_RS07650 and HMPREF1058_RS07645 are separated by 209 nucleotides HMPREF1058_RS07645 and HMPREF1058_RS07640 are separated by 2 nucleotides HMPREF1058_RS07640 and HMPREF1058_RS07635 are separated by 15 nucleotides
HMPREF1058_RS07660: HMPREF1058_RS07660 - IS1182 family transposase, at 168,057 to 169,712
_RS07660
HMPREF1058_RS07655: HMPREF1058_RS07655 - hypothetical protein, at 169,852 to 170,034
_RS07655
HMPREF1058_RS07650: HMPREF1058_RS07650 - MarR family transcriptional regulator, at 170,143 to 170,589
_RS07650
HMPREF1058_RS07645: HMPREF1058_RS07645 - 30S ribosomal protein S6, at 170,799 to 171,143
_RS07645
HMPREF1058_RS07640: HMPREF1058_RS07640 - 30S ribosomal protein S18, at 171,146 to 171,415
_RS07640
HMPREF1058_RS07635: HMPREF1058_RS07635 - 50S ribosomal protein L9, at 171,431 to 171,874
_RS07635
Position (kb) 170
171 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 169.847 kb on - strand at 169.848 kb on + strand at 169.882 kb on - strand, within HMPREF1058_RS07655 at 170.011 kb on + strand, within HMPREF1058_RS07655 at 170.052 kb on - strand at 170.052 kb on - strand at 170.063 kb on - strand at 170.087 kb on - strand at 170.165 kb on - strand at 170.165 kb on - strand at 170.174 kb on - strand at 170.177 kb on - strand at 170.296 kb on + strand, within HMPREF1058_RS07650 at 170.391 kb on + strand, within HMPREF1058_RS07650 at 170.403 kb on + strand, within HMPREF1058_RS07650 at 170.408 kb on - strand, within HMPREF1058_RS07650 at 170.408 kb on - strand, within HMPREF1058_RS07650 at 170.542 kb on + strand, within HMPREF1058_RS07650 at 170.554 kb on + strand at 171.430 kb on + strand at 171.486 kb on + strand, within HMPREF1058_RS07635
Per-strain Table
Position Strand Gene LocusTag Fraction Galactan from Potato 2.5 mg/ml (C) remove 169,847 - -0.7 169,848 + -1.1 169,882 - HMPREF1058_RS07655 0.16 -2.7 170,011 + HMPREF1058_RS07655 0.87 -1.7 170,052 - -0.5 170,052 - -2.8 170,063 - -0.2 170,087 - -2.5 170,165 - +1.3 170,165 - +0.8 170,174 - +2.6 170,177 - +0.7 170,296 + HMPREF1058_RS07650 0.34 +0.1 170,391 + HMPREF1058_RS07650 0.55 +1.0 170,403 + HMPREF1058_RS07650 0.58 +1.0 170,408 - HMPREF1058_RS07650 0.59 +1.2 170,408 - HMPREF1058_RS07650 0.59 +0.7 170,542 + HMPREF1058_RS07650 0.89 -0.4 170,554 + +0.6 171,430 + +1.8 171,486 + HMPREF1058_RS07635 0.12 -1.4
Or see this region's nucleotide sequence