Experiment: Galactan from Potato 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS07645 and HMPREF1058_RS07640 are separated by 2 nucleotides HMPREF1058_RS07640 and HMPREF1058_RS07635 are separated by 15 nucleotides HMPREF1058_RS07635 and HMPREF1058_RS07630 are separated by 69 nucleotides HMPREF1058_RS07630 and HMPREF1058_RS07625 are separated by 154 nucleotides HMPREF1058_RS07625 and HMPREF1058_RS07620 are separated by 160 nucleotides
HMPREF1058_RS07645: HMPREF1058_RS07645 - 30S ribosomal protein S6, at 170,799 to 171,143
_RS07645
HMPREF1058_RS07640: HMPREF1058_RS07640 - 30S ribosomal protein S18, at 171,146 to 171,415
_RS07640
HMPREF1058_RS07635: HMPREF1058_RS07635 - 50S ribosomal protein L9, at 171,431 to 171,874
_RS07635
HMPREF1058_RS07630: HMPREF1058_RS07630 - hypothetical protein, at 171,944 to 172,636
_RS07630
HMPREF1058_RS07625: HMPREF1058_RS07625 - hypothetical protein, at 172,791 to 172,991
_RS07625
HMPREF1058_RS07620: HMPREF1058_RS07620 - long-chain fatty acid--CoA ligase, at 173,152 to 174,825
_RS07620
Position (kb) 171
172
173 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 171.430 kb on + strand at 171.486 kb on + strand, within HMPREF1058_RS07635 at 171.654 kb on + strand, within HMPREF1058_RS07635 at 171.806 kb on + strand, within HMPREF1058_RS07635 at 171.806 kb on + strand, within HMPREF1058_RS07635 at 171.807 kb on - strand, within HMPREF1058_RS07635 at 171.885 kb on + strand at 171.895 kb on + strand at 171.949 kb on - strand at 171.980 kb on + strand at 172.000 kb on + strand at 172.021 kb on + strand, within HMPREF1058_RS07630 at 172.056 kb on + strand, within HMPREF1058_RS07630 at 172.056 kb on + strand, within HMPREF1058_RS07630 at 172.056 kb on + strand, within HMPREF1058_RS07630 at 172.057 kb on - strand, within HMPREF1058_RS07630 at 172.147 kb on + strand, within HMPREF1058_RS07630 at 172.165 kb on + strand, within HMPREF1058_RS07630 at 172.165 kb on + strand, within HMPREF1058_RS07630 at 172.167 kb on + strand, within HMPREF1058_RS07630 at 172.167 kb on + strand, within HMPREF1058_RS07630 at 172.168 kb on - strand, within HMPREF1058_RS07630 at 172.168 kb on - strand, within HMPREF1058_RS07630 at 172.283 kb on + strand, within HMPREF1058_RS07630 at 172.349 kb on - strand, within HMPREF1058_RS07630 at 172.385 kb on + strand, within HMPREF1058_RS07630 at 172.415 kb on + strand, within HMPREF1058_RS07630 at 172.415 kb on + strand, within HMPREF1058_RS07630 at 172.441 kb on + strand, within HMPREF1058_RS07630 at 172.441 kb on + strand, within HMPREF1058_RS07630 at 172.489 kb on + strand, within HMPREF1058_RS07630 at 172.493 kb on + strand, within HMPREF1058_RS07630 at 172.546 kb on + strand, within HMPREF1058_RS07630 at 172.547 kb on - strand, within HMPREF1058_RS07630 at 172.547 kb on - strand, within HMPREF1058_RS07630 at 172.671 kb on + strand at 172.683 kb on - strand at 172.687 kb on + strand at 172.720 kb on + strand at 172.721 kb on - strand at 172.792 kb on + strand at 172.792 kb on + strand at 172.806 kb on - strand at 172.882 kb on - strand, within HMPREF1058_RS07625 at 172.965 kb on + strand, within HMPREF1058_RS07625 at 173.014 kb on - strand at 173.017 kb on - strand at 173.020 kb on - strand at 173.111 kb on - strand at 173.163 kb on + strand at 173.174 kb on + strand at 173.175 kb on - strand at 173.175 kb on - strand at 173.252 kb on + strand at 173.359 kb on + strand, within HMPREF1058_RS07620 at 173.362 kb on + strand, within HMPREF1058_RS07620 at 173.389 kb on + strand, within HMPREF1058_RS07620 at 173.389 kb on + strand, within HMPREF1058_RS07620 at 173.390 kb on - strand, within HMPREF1058_RS07620 at 173.396 kb on - strand, within HMPREF1058_RS07620 at 173.419 kb on - strand, within HMPREF1058_RS07620 at 173.421 kb on + strand, within HMPREF1058_RS07620 at 173.422 kb on - strand, within HMPREF1058_RS07620 at 173.422 kb on - strand, within HMPREF1058_RS07620 at 173.454 kb on + strand, within HMPREF1058_RS07620 at 173.466 kb on + strand, within HMPREF1058_RS07620 at 173.467 kb on - strand, within HMPREF1058_RS07620 at 173.501 kb on - strand, within HMPREF1058_RS07620 at 173.501 kb on - strand, within HMPREF1058_RS07620 at 173.502 kb on + strand, within HMPREF1058_RS07620 at 173.524 kb on + strand, within HMPREF1058_RS07620 at 173.525 kb on - strand, within HMPREF1058_RS07620 at 173.525 kb on - strand, within HMPREF1058_RS07620 at 173.529 kb on + strand, within HMPREF1058_RS07620 at 173.595 kb on + strand, within HMPREF1058_RS07620 at 173.595 kb on + strand, within HMPREF1058_RS07620 at 173.596 kb on - strand, within HMPREF1058_RS07620 at 173.597 kb on + strand, within HMPREF1058_RS07620 at 173.598 kb on - strand, within HMPREF1058_RS07620 at 173.598 kb on - strand at 173.598 kb on - strand, within HMPREF1058_RS07620 at 173.598 kb on - strand, within HMPREF1058_RS07620 at 173.627 kb on - strand, within HMPREF1058_RS07620 at 173.633 kb on - strand, within HMPREF1058_RS07620
Per-strain Table
Position Strand Gene LocusTag Fraction Galactan from Potato 2.5 mg/ml (C) remove 171,430 + +1.8 171,486 + HMPREF1058_RS07635 0.12 -1.4 171,654 + HMPREF1058_RS07635 0.50 -2.0 171,806 + HMPREF1058_RS07635 0.84 -0.6 171,806 + HMPREF1058_RS07635 0.84 -0.3 171,807 - HMPREF1058_RS07635 0.85 +3.6 171,885 + -0.9 171,895 + -0.4 171,949 - +0.1 171,980 + +0.1 172,000 + +0.2 172,021 + HMPREF1058_RS07630 0.11 +1.0 172,056 + HMPREF1058_RS07630 0.16 +0.3 172,056 + HMPREF1058_RS07630 0.16 +0.5 172,056 + HMPREF1058_RS07630 0.16 +2.8 172,057 - HMPREF1058_RS07630 0.16 -0.1 172,147 + HMPREF1058_RS07630 0.29 +1.7 172,165 + HMPREF1058_RS07630 0.32 +1.2 172,165 + HMPREF1058_RS07630 0.32 +0.7 172,167 + HMPREF1058_RS07630 0.32 +0.3 172,167 + HMPREF1058_RS07630 0.32 +0.8 172,168 - HMPREF1058_RS07630 0.32 +2.1 172,168 - HMPREF1058_RS07630 0.32 -0.0 172,283 + HMPREF1058_RS07630 0.49 -0.1 172,349 - HMPREF1058_RS07630 0.58 -2.0 172,385 + HMPREF1058_RS07630 0.64 +0.9 172,415 + HMPREF1058_RS07630 0.68 -1.2 172,415 + HMPREF1058_RS07630 0.68 +0.1 172,441 + HMPREF1058_RS07630 0.72 -1.2 172,441 + HMPREF1058_RS07630 0.72 -0.6 172,489 + HMPREF1058_RS07630 0.79 -0.2 172,493 + HMPREF1058_RS07630 0.79 -1.5 172,546 + HMPREF1058_RS07630 0.87 +0.7 172,547 - HMPREF1058_RS07630 0.87 +0.6 172,547 - HMPREF1058_RS07630 0.87 +2.0 172,671 + +0.2 172,683 - +1.5 172,687 + +0.4 172,720 + -1.9 172,721 - +0.9 172,792 + -0.5 172,792 + +0.3 172,806 - +0.7 172,882 - HMPREF1058_RS07625 0.45 +0.5 172,965 + HMPREF1058_RS07625 0.87 -1.2 173,014 - -0.5 173,017 - -0.7 173,020 - -0.3 173,111 - +1.3 173,163 + +0.9 173,174 + -0.3 173,175 - +1.2 173,175 - +1.9 173,252 + +1.4 173,359 + HMPREF1058_RS07620 0.12 +0.6 173,362 + HMPREF1058_RS07620 0.13 +2.1 173,389 + HMPREF1058_RS07620 0.14 +0.8 173,389 + HMPREF1058_RS07620 0.14 +1.5 173,390 - HMPREF1058_RS07620 0.14 +2.0 173,396 - HMPREF1058_RS07620 0.15 +2.3 173,419 - HMPREF1058_RS07620 0.16 +2.4 173,421 + HMPREF1058_RS07620 0.16 +1.6 173,422 - HMPREF1058_RS07620 0.16 +2.1 173,422 - HMPREF1058_RS07620 0.16 +1.5 173,454 + HMPREF1058_RS07620 0.18 +1.4 173,466 + HMPREF1058_RS07620 0.19 +0.9 173,467 - HMPREF1058_RS07620 0.19 +4.0 173,501 - HMPREF1058_RS07620 0.21 +1.9 173,501 - HMPREF1058_RS07620 0.21 +0.2 173,502 + HMPREF1058_RS07620 0.21 +0.4 173,524 + HMPREF1058_RS07620 0.22 +1.3 173,525 - HMPREF1058_RS07620 0.22 +1.2 173,525 - HMPREF1058_RS07620 0.22 +1.9 173,529 + HMPREF1058_RS07620 0.23 +1.0 173,595 + HMPREF1058_RS07620 0.26 +1.4 173,595 + HMPREF1058_RS07620 0.26 +3.1 173,596 - HMPREF1058_RS07620 0.27 +3.2 173,597 + HMPREF1058_RS07620 0.27 +1.7 173,598 - HMPREF1058_RS07620 0.27 +2.2 173,598 - -0.8 173,598 - HMPREF1058_RS07620 0.27 +1.2 173,598 - HMPREF1058_RS07620 0.27 +2.0 173,627 - HMPREF1058_RS07620 0.28 +1.3 173,633 - HMPREF1058_RS07620 0.29 +1.2
Or see this region's nucleotide sequence