Experiment: Galactan from Potato 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS07630 and HMPREF1058_RS07625 are separated by 154 nucleotides HMPREF1058_RS07625 and HMPREF1058_RS07620 are separated by 160 nucleotides HMPREF1058_RS07620 and HMPREF1058_RS07615 are separated by 105 nucleotides
HMPREF1058_RS07630: HMPREF1058_RS07630 - hypothetical protein, at 171,944 to 172,636
_RS07630
HMPREF1058_RS07625: HMPREF1058_RS07625 - hypothetical protein, at 172,791 to 172,991
_RS07625
HMPREF1058_RS07620: HMPREF1058_RS07620 - long-chain fatty acid--CoA ligase, at 173,152 to 174,825
_RS07620
HMPREF1058_RS07615: HMPREF1058_RS07615 - tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase MtaB, at 174,931 to 176,247
_RS07615
Position (kb) 173
174
175 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 172.165 kb on + strand, within HMPREF1058_RS07630 at 172.165 kb on + strand, within HMPREF1058_RS07630 at 172.167 kb on + strand, within HMPREF1058_RS07630 at 172.167 kb on + strand, within HMPREF1058_RS07630 at 172.168 kb on - strand, within HMPREF1058_RS07630 at 172.168 kb on - strand, within HMPREF1058_RS07630 at 172.283 kb on + strand, within HMPREF1058_RS07630 at 172.349 kb on - strand, within HMPREF1058_RS07630 at 172.385 kb on + strand, within HMPREF1058_RS07630 at 172.415 kb on + strand, within HMPREF1058_RS07630 at 172.415 kb on + strand, within HMPREF1058_RS07630 at 172.441 kb on + strand, within HMPREF1058_RS07630 at 172.441 kb on + strand, within HMPREF1058_RS07630 at 172.489 kb on + strand, within HMPREF1058_RS07630 at 172.493 kb on + strand, within HMPREF1058_RS07630 at 172.546 kb on + strand, within HMPREF1058_RS07630 at 172.547 kb on - strand, within HMPREF1058_RS07630 at 172.547 kb on - strand, within HMPREF1058_RS07630 at 172.671 kb on + strand at 172.683 kb on - strand at 172.687 kb on + strand at 172.720 kb on + strand at 172.721 kb on - strand at 172.792 kb on + strand at 172.792 kb on + strand at 172.806 kb on - strand at 172.882 kb on - strand, within HMPREF1058_RS07625 at 172.965 kb on + strand, within HMPREF1058_RS07625 at 173.014 kb on - strand at 173.017 kb on - strand at 173.020 kb on - strand at 173.111 kb on - strand at 173.163 kb on + strand at 173.174 kb on + strand at 173.175 kb on - strand at 173.175 kb on - strand at 173.252 kb on + strand at 173.359 kb on + strand, within HMPREF1058_RS07620 at 173.362 kb on + strand, within HMPREF1058_RS07620 at 173.389 kb on + strand, within HMPREF1058_RS07620 at 173.389 kb on + strand, within HMPREF1058_RS07620 at 173.390 kb on - strand, within HMPREF1058_RS07620 at 173.396 kb on - strand, within HMPREF1058_RS07620 at 173.419 kb on - strand, within HMPREF1058_RS07620 at 173.421 kb on + strand, within HMPREF1058_RS07620 at 173.422 kb on - strand, within HMPREF1058_RS07620 at 173.422 kb on - strand, within HMPREF1058_RS07620 at 173.454 kb on + strand, within HMPREF1058_RS07620 at 173.466 kb on + strand, within HMPREF1058_RS07620 at 173.467 kb on - strand, within HMPREF1058_RS07620 at 173.501 kb on - strand, within HMPREF1058_RS07620 at 173.501 kb on - strand, within HMPREF1058_RS07620 at 173.502 kb on + strand, within HMPREF1058_RS07620 at 173.524 kb on + strand, within HMPREF1058_RS07620 at 173.525 kb on - strand, within HMPREF1058_RS07620 at 173.525 kb on - strand, within HMPREF1058_RS07620 at 173.529 kb on + strand, within HMPREF1058_RS07620 at 173.595 kb on + strand, within HMPREF1058_RS07620 at 173.595 kb on + strand, within HMPREF1058_RS07620 at 173.596 kb on - strand, within HMPREF1058_RS07620 at 173.597 kb on + strand, within HMPREF1058_RS07620 at 173.598 kb on - strand, within HMPREF1058_RS07620 at 173.598 kb on - strand at 173.598 kb on - strand, within HMPREF1058_RS07620 at 173.598 kb on - strand, within HMPREF1058_RS07620 at 173.627 kb on - strand, within HMPREF1058_RS07620 at 173.633 kb on - strand, within HMPREF1058_RS07620 at 173.649 kb on + strand, within HMPREF1058_RS07620 at 173.652 kb on - strand, within HMPREF1058_RS07620 at 173.713 kb on + strand, within HMPREF1058_RS07620 at 173.713 kb on + strand, within HMPREF1058_RS07620 at 173.715 kb on + strand, within HMPREF1058_RS07620 at 173.715 kb on + strand, within HMPREF1058_RS07620 at 173.736 kb on - strand, within HMPREF1058_RS07620 at 173.854 kb on - strand, within HMPREF1058_RS07620 at 173.900 kb on + strand, within HMPREF1058_RS07620 at 173.901 kb on - strand, within HMPREF1058_RS07620 at 173.914 kb on + strand, within HMPREF1058_RS07620 at 173.917 kb on + strand, within HMPREF1058_RS07620 at 173.918 kb on - strand, within HMPREF1058_RS07620 at 173.980 kb on - strand, within HMPREF1058_RS07620 at 173.980 kb on - strand, within HMPREF1058_RS07620 at 173.995 kb on - strand, within HMPREF1058_RS07620 at 173.995 kb on - strand, within HMPREF1058_RS07620 at 174.004 kb on + strand, within HMPREF1058_RS07620 at 174.016 kb on - strand, within HMPREF1058_RS07620 at 174.016 kb on - strand, within HMPREF1058_RS07620 at 174.135 kb on - strand, within HMPREF1058_RS07620 at 174.164 kb on - strand, within HMPREF1058_RS07620 at 174.275 kb on + strand, within HMPREF1058_RS07620 at 174.276 kb on - strand, within HMPREF1058_RS07620 at 174.276 kb on - strand, within HMPREF1058_RS07620 at 174.313 kb on - strand, within HMPREF1058_RS07620 at 174.314 kb on + strand, within HMPREF1058_RS07620 at 174.321 kb on + strand, within HMPREF1058_RS07620 at 174.332 kb on + strand, within HMPREF1058_RS07620 at 174.333 kb on - strand, within HMPREF1058_RS07620 at 174.333 kb on - strand, within HMPREF1058_RS07620 at 174.460 kb on + strand, within HMPREF1058_RS07620 at 174.461 kb on - strand, within HMPREF1058_RS07620 at 174.571 kb on - strand, within HMPREF1058_RS07620 at 174.582 kb on + strand, within HMPREF1058_RS07620 at 174.594 kb on + strand, within HMPREF1058_RS07620 at 174.609 kb on - strand, within HMPREF1058_RS07620 at 174.631 kb on - strand, within HMPREF1058_RS07620 at 174.636 kb on + strand, within HMPREF1058_RS07620 at 174.641 kb on - strand, within HMPREF1058_RS07620 at 174.646 kb on - strand, within HMPREF1058_RS07620 at 174.650 kb on - strand, within HMPREF1058_RS07620 at 174.695 kb on - strand at 174.704 kb on - strand at 174.729 kb on + strand at 174.729 kb on + strand at 174.730 kb on - strand at 174.750 kb on - strand at 174.799 kb on + strand at 174.799 kb on + strand at 174.799 kb on + strand at 174.808 kb on - strand at 174.842 kb on + strand at 174.862 kb on - strand at 174.885 kb on + strand at 174.894 kb on + strand at 175.041 kb on + strand at 175.043 kb on + strand at 175.086 kb on + strand, within HMPREF1058_RS07615 at 175.089 kb on + strand, within HMPREF1058_RS07615 at 175.172 kb on + strand, within HMPREF1058_RS07615 at 175.189 kb on + strand, within HMPREF1058_RS07615 at 175.341 kb on + strand, within HMPREF1058_RS07615 at 175.670 kb on + strand, within HMPREF1058_RS07615 at 175.675 kb on + strand, within HMPREF1058_RS07615 at 175.675 kb on + strand, within HMPREF1058_RS07615 at 175.675 kb on + strand, within HMPREF1058_RS07615
Per-strain Table
Position Strand Gene LocusTag Fraction Galactan from Potato 2.5 mg/ml (C) remove 172,165 + HMPREF1058_RS07630 0.32 +1.2 172,165 + HMPREF1058_RS07630 0.32 +0.7 172,167 + HMPREF1058_RS07630 0.32 +0.3 172,167 + HMPREF1058_RS07630 0.32 +0.8 172,168 - HMPREF1058_RS07630 0.32 +2.1 172,168 - HMPREF1058_RS07630 0.32 -0.0 172,283 + HMPREF1058_RS07630 0.49 -0.1 172,349 - HMPREF1058_RS07630 0.58 -2.0 172,385 + HMPREF1058_RS07630 0.64 +0.9 172,415 + HMPREF1058_RS07630 0.68 -1.2 172,415 + HMPREF1058_RS07630 0.68 +0.1 172,441 + HMPREF1058_RS07630 0.72 -1.2 172,441 + HMPREF1058_RS07630 0.72 -0.6 172,489 + HMPREF1058_RS07630 0.79 -0.2 172,493 + HMPREF1058_RS07630 0.79 -1.5 172,546 + HMPREF1058_RS07630 0.87 +0.7 172,547 - HMPREF1058_RS07630 0.87 +0.6 172,547 - HMPREF1058_RS07630 0.87 +2.0 172,671 + +0.2 172,683 - +1.5 172,687 + +0.4 172,720 + -1.9 172,721 - +0.9 172,792 + -0.5 172,792 + +0.3 172,806 - +0.7 172,882 - HMPREF1058_RS07625 0.45 +0.5 172,965 + HMPREF1058_RS07625 0.87 -1.2 173,014 - -0.5 173,017 - -0.7 173,020 - -0.3 173,111 - +1.3 173,163 + +0.9 173,174 + -0.3 173,175 - +1.2 173,175 - +1.9 173,252 + +1.4 173,359 + HMPREF1058_RS07620 0.12 +0.6 173,362 + HMPREF1058_RS07620 0.13 +2.1 173,389 + HMPREF1058_RS07620 0.14 +0.8 173,389 + HMPREF1058_RS07620 0.14 +1.5 173,390 - HMPREF1058_RS07620 0.14 +2.0 173,396 - HMPREF1058_RS07620 0.15 +2.3 173,419 - HMPREF1058_RS07620 0.16 +2.4 173,421 + HMPREF1058_RS07620 0.16 +1.6 173,422 - HMPREF1058_RS07620 0.16 +2.1 173,422 - HMPREF1058_RS07620 0.16 +1.5 173,454 + HMPREF1058_RS07620 0.18 +1.4 173,466 + HMPREF1058_RS07620 0.19 +0.9 173,467 - HMPREF1058_RS07620 0.19 +4.0 173,501 - HMPREF1058_RS07620 0.21 +1.9 173,501 - HMPREF1058_RS07620 0.21 +0.2 173,502 + HMPREF1058_RS07620 0.21 +0.4 173,524 + HMPREF1058_RS07620 0.22 +1.3 173,525 - HMPREF1058_RS07620 0.22 +1.2 173,525 - HMPREF1058_RS07620 0.22 +1.9 173,529 + HMPREF1058_RS07620 0.23 +1.0 173,595 + HMPREF1058_RS07620 0.26 +1.4 173,595 + HMPREF1058_RS07620 0.26 +3.1 173,596 - HMPREF1058_RS07620 0.27 +3.2 173,597 + HMPREF1058_RS07620 0.27 +1.7 173,598 - HMPREF1058_RS07620 0.27 +2.2 173,598 - -0.8 173,598 - HMPREF1058_RS07620 0.27 +1.2 173,598 - HMPREF1058_RS07620 0.27 +2.0 173,627 - HMPREF1058_RS07620 0.28 +1.3 173,633 - HMPREF1058_RS07620 0.29 +1.2 173,649 + HMPREF1058_RS07620 0.30 +2.4 173,652 - HMPREF1058_RS07620 0.30 +3.3 173,713 + HMPREF1058_RS07620 0.34 +1.0 173,713 + HMPREF1058_RS07620 0.34 +3.3 173,715 + HMPREF1058_RS07620 0.34 +1.7 173,715 + HMPREF1058_RS07620 0.34 +1.6 173,736 - HMPREF1058_RS07620 0.35 +1.9 173,854 - HMPREF1058_RS07620 0.42 +2.7 173,900 + HMPREF1058_RS07620 0.45 +2.8 173,901 - HMPREF1058_RS07620 0.45 +1.2 173,914 + HMPREF1058_RS07620 0.46 +3.3 173,917 + HMPREF1058_RS07620 0.46 +1.5 173,918 - HMPREF1058_RS07620 0.46 +1.5 173,980 - HMPREF1058_RS07620 0.49 +1.6 173,980 - HMPREF1058_RS07620 0.49 +0.5 173,995 - HMPREF1058_RS07620 0.50 +1.6 173,995 - HMPREF1058_RS07620 0.50 -1.5 174,004 + HMPREF1058_RS07620 0.51 +1.7 174,016 - HMPREF1058_RS07620 0.52 +2.7 174,016 - HMPREF1058_RS07620 0.52 +2.4 174,135 - HMPREF1058_RS07620 0.59 +3.0 174,164 - HMPREF1058_RS07620 0.60 +1.6 174,275 + HMPREF1058_RS07620 0.67 +1.1 174,276 - HMPREF1058_RS07620 0.67 +1.9 174,276 - HMPREF1058_RS07620 0.67 +1.3 174,313 - HMPREF1058_RS07620 0.69 +2.6 174,314 + HMPREF1058_RS07620 0.69 +0.6 174,321 + HMPREF1058_RS07620 0.70 -0.7 174,332 + HMPREF1058_RS07620 0.70 +2.5 174,333 - HMPREF1058_RS07620 0.71 +2.1 174,333 - HMPREF1058_RS07620 0.71 +1.4 174,460 + HMPREF1058_RS07620 0.78 +0.5 174,461 - HMPREF1058_RS07620 0.78 +1.4 174,571 - HMPREF1058_RS07620 0.85 +2.0 174,582 + HMPREF1058_RS07620 0.85 +2.0 174,594 + HMPREF1058_RS07620 0.86 +1.3 174,609 - HMPREF1058_RS07620 0.87 +1.5 174,631 - HMPREF1058_RS07620 0.88 +2.5 174,636 + HMPREF1058_RS07620 0.89 +2.9 174,641 - HMPREF1058_RS07620 0.89 +1.0 174,646 - HMPREF1058_RS07620 0.89 +1.2 174,650 - HMPREF1058_RS07620 0.89 +2.0 174,695 - +2.4 174,704 - +4.9 174,729 + +0.3 174,729 + +0.2 174,730 - +1.0 174,750 - -0.2 174,799 + +1.1 174,799 + +1.2 174,799 + +0.2 174,808 - +0.1 174,842 + +2.0 174,862 - +0.5 174,885 + +0.4 174,894 + +2.4 175,041 + +0.9 175,043 + -1.1 175,086 + HMPREF1058_RS07615 0.12 +0.7 175,089 + HMPREF1058_RS07615 0.12 -2.2 175,172 + HMPREF1058_RS07615 0.18 +0.3 175,189 + HMPREF1058_RS07615 0.20 -0.4 175,341 + HMPREF1058_RS07615 0.31 -0.2 175,670 + HMPREF1058_RS07615 0.56 -0.1 175,675 + HMPREF1058_RS07615 0.56 -0.4 175,675 + HMPREF1058_RS07615 0.56 -0.2 175,675 + HMPREF1058_RS07615 0.56 -1.5
Or see this region's nucleotide sequence