Experiment: Galactan from Potato 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS07595 and HMPREF1058_RS07590 are separated by 92 nucleotides HMPREF1058_RS07590 and HMPREF1058_RS07585 are separated by 343 nucleotides
HMPREF1058_RS07595: HMPREF1058_RS07595 - membrane protein, at 178,955 to 181,927
_RS07595
HMPREF1058_RS07590: HMPREF1058_RS07590 - adenosylcobalamin-dependent ribonucleoside-diphosphate reductase, at 182,020 to 184,566
_RS07590
HMPREF1058_RS07585: HMPREF1058_RS07585 - NADPH-dependent oxidoreductase, at 184,910 to 185,650
_RS07585
Position (kb) 182
183
184
185 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 181.053 kb on + strand, within HMPREF1058_RS07595 at 181.209 kb on + strand, within HMPREF1058_RS07595 at 181.287 kb on + strand, within HMPREF1058_RS07595 at 181.287 kb on + strand, within HMPREF1058_RS07595 at 181.318 kb on + strand, within HMPREF1058_RS07595 at 181.340 kb on - strand, within HMPREF1058_RS07595 at 181.347 kb on + strand, within HMPREF1058_RS07595 at 181.347 kb on + strand, within HMPREF1058_RS07595 at 181.347 kb on + strand, within HMPREF1058_RS07595 at 181.347 kb on + strand, within HMPREF1058_RS07595 at 181.347 kb on + strand, within HMPREF1058_RS07595 at 181.348 kb on - strand, within HMPREF1058_RS07595 at 181.348 kb on - strand, within HMPREF1058_RS07595 at 181.352 kb on - strand, within HMPREF1058_RS07595 at 181.352 kb on - strand, within HMPREF1058_RS07595 at 181.395 kb on + strand, within HMPREF1058_RS07595 at 181.395 kb on + strand, within HMPREF1058_RS07595 at 181.395 kb on + strand, within HMPREF1058_RS07595 at 181.396 kb on - strand, within HMPREF1058_RS07595 at 181.399 kb on + strand, within HMPREF1058_RS07595 at 181.483 kb on + strand, within HMPREF1058_RS07595 at 181.483 kb on + strand, within HMPREF1058_RS07595 at 181.503 kb on - strand, within HMPREF1058_RS07595 at 181.505 kb on - strand, within HMPREF1058_RS07595 at 181.506 kb on + strand, within HMPREF1058_RS07595 at 181.507 kb on - strand, within HMPREF1058_RS07595 at 181.594 kb on - strand, within HMPREF1058_RS07595 at 181.617 kb on + strand, within HMPREF1058_RS07595 at 181.617 kb on + strand, within HMPREF1058_RS07595 at 181.663 kb on + strand at 181.664 kb on - strand at 181.665 kb on + strand at 181.665 kb on + strand at 181.727 kb on - strand at 181.727 kb on - strand at 181.727 kb on - strand at 181.727 kb on - strand at 181.727 kb on - strand at 181.727 kb on - strand at 181.801 kb on - strand at 181.807 kb on - strand at 181.807 kb on - strand at 181.853 kb on - strand at 181.853 kb on - strand at 181.857 kb on + strand at 181.858 kb on - strand at 181.861 kb on + strand at 181.865 kb on - strand at 181.878 kb on + strand at 181.909 kb on + strand at 181.915 kb on - strand at 181.947 kb on + strand at 181.947 kb on + strand at 181.949 kb on + strand at 181.950 kb on - strand at 182.002 kb on - strand at 182.006 kb on + strand at 182.007 kb on - strand at 182.007 kb on - strand at 182.008 kb on + strand at 182.014 kb on - strand at 182.124 kb on + strand at 182.124 kb on + strand at 182.251 kb on + strand at 182.273 kb on + strand at 182.274 kb on - strand at 182.488 kb on + strand, within HMPREF1058_RS07590 at 182.489 kb on - strand, within HMPREF1058_RS07590 at 182.489 kb on - strand, within HMPREF1058_RS07590 at 182.531 kb on - strand, within HMPREF1058_RS07590 at 182.545 kb on + strand, within HMPREF1058_RS07590 at 182.698 kb on + strand, within HMPREF1058_RS07590 at 182.703 kb on - strand, within HMPREF1058_RS07590 at 182.728 kb on + strand, within HMPREF1058_RS07590 at 182.728 kb on + strand, within HMPREF1058_RS07590 at 182.749 kb on - strand, within HMPREF1058_RS07590 at 182.838 kb on + strand, within HMPREF1058_RS07590 at 182.841 kb on - strand, within HMPREF1058_RS07590 at 182.841 kb on - strand, within HMPREF1058_RS07590 at 182.843 kb on + strand, within HMPREF1058_RS07590 at 182.934 kb on + strand, within HMPREF1058_RS07590 at 182.945 kb on - strand, within HMPREF1058_RS07590 at 182.952 kb on - strand, within HMPREF1058_RS07590 at 183.027 kb on + strand, within HMPREF1058_RS07590 at 183.035 kb on + strand, within HMPREF1058_RS07590 at 183.036 kb on - strand, within HMPREF1058_RS07590 at 183.070 kb on - strand, within HMPREF1058_RS07590 at 183.106 kb on + strand, within HMPREF1058_RS07590 at 183.127 kb on - strand, within HMPREF1058_RS07590 at 183.291 kb on + strand, within HMPREF1058_RS07590 at 183.291 kb on + strand, within HMPREF1058_RS07590 at 183.292 kb on - strand, within HMPREF1058_RS07590 at 183.295 kb on + strand, within HMPREF1058_RS07590 at 183.338 kb on - strand, within HMPREF1058_RS07590 at 183.375 kb on + strand, within HMPREF1058_RS07590 at 183.375 kb on + strand, within HMPREF1058_RS07590 at 183.375 kb on + strand, within HMPREF1058_RS07590 at 183.388 kb on - strand, within HMPREF1058_RS07590 at 183.480 kb on + strand, within HMPREF1058_RS07590 at 183.480 kb on + strand, within HMPREF1058_RS07590 at 183.485 kb on - strand, within HMPREF1058_RS07590 at 183.594 kb on + strand, within HMPREF1058_RS07590 at 183.594 kb on + strand, within HMPREF1058_RS07590 at 183.594 kb on + strand, within HMPREF1058_RS07590 at 183.594 kb on + strand, within HMPREF1058_RS07590 at 183.595 kb on - strand, within HMPREF1058_RS07590 at 183.595 kb on - strand, within HMPREF1058_RS07590 at 183.604 kb on + strand, within HMPREF1058_RS07590 at 183.611 kb on + strand, within HMPREF1058_RS07590 at 183.612 kb on - strand, within HMPREF1058_RS07590 at 183.612 kb on - strand, within HMPREF1058_RS07590 at 183.632 kb on - strand, within HMPREF1058_RS07590 at 183.634 kb on + strand, within HMPREF1058_RS07590 at 183.694 kb on - strand, within HMPREF1058_RS07590 at 183.940 kb on + strand, within HMPREF1058_RS07590 at 184.013 kb on + strand, within HMPREF1058_RS07590 at 184.133 kb on - strand, within HMPREF1058_RS07590 at 184.134 kb on + strand, within HMPREF1058_RS07590 at 184.142 kb on - strand, within HMPREF1058_RS07590 at 184.174 kb on + strand, within HMPREF1058_RS07590 at 184.175 kb on - strand, within HMPREF1058_RS07590 at 184.204 kb on + strand, within HMPREF1058_RS07590 at 184.207 kb on - strand, within HMPREF1058_RS07590 at 184.207 kb on - strand, within HMPREF1058_RS07590 at 184.320 kb on - strand at 184.320 kb on - strand at 184.324 kb on - strand at 184.337 kb on - strand at 184.372 kb on - strand at 184.378 kb on - strand at 184.462 kb on + strand at 184.551 kb on - strand at 184.571 kb on - strand at 184.582 kb on + strand at 184.652 kb on - strand at 184.654 kb on - strand at 184.655 kb on + strand at 184.656 kb on - strand at 184.925 kb on - strand at 185.011 kb on + strand, within HMPREF1058_RS07585 at 185.031 kb on + strand, within HMPREF1058_RS07585 at 185.031 kb on + strand, within HMPREF1058_RS07585 at 185.033 kb on + strand, within HMPREF1058_RS07585 at 185.034 kb on - strand, within HMPREF1058_RS07585 at 185.034 kb on - strand, within HMPREF1058_RS07585 at 185.036 kb on - strand, within HMPREF1058_RS07585 at 185.159 kb on - strand, within HMPREF1058_RS07585 at 185.368 kb on + strand, within HMPREF1058_RS07585 at 185.375 kb on - strand, within HMPREF1058_RS07585 at 185.422 kb on + strand, within HMPREF1058_RS07585 at 185.423 kb on - strand, within HMPREF1058_RS07585 at 185.424 kb on + strand, within HMPREF1058_RS07585 at 185.474 kb on - strand, within HMPREF1058_RS07585 at 185.482 kb on + strand, within HMPREF1058_RS07585 at 185.483 kb on - strand, within HMPREF1058_RS07585 at 185.486 kb on + strand, within HMPREF1058_RS07585 at 185.493 kb on - strand, within HMPREF1058_RS07585 at 185.494 kb on + strand, within HMPREF1058_RS07585 at 185.495 kb on - strand, within HMPREF1058_RS07585 at 185.495 kb on - strand, within HMPREF1058_RS07585 at 185.495 kb on - strand, within HMPREF1058_RS07585 at 185.495 kb on - strand, within HMPREF1058_RS07585
Per-strain Table
Position Strand Gene LocusTag Fraction Galactan from Potato 2.5 mg/ml (C) remove 181,053 + HMPREF1058_RS07595 0.71 -0.6 181,209 + HMPREF1058_RS07595 0.76 +1.8 181,287 + HMPREF1058_RS07595 0.78 +1.7 181,287 + HMPREF1058_RS07595 0.78 -0.5 181,318 + HMPREF1058_RS07595 0.79 -0.7 181,340 - HMPREF1058_RS07595 0.80 +0.5 181,347 + HMPREF1058_RS07595 0.80 +0.2 181,347 + HMPREF1058_RS07595 0.80 +1.0 181,347 + HMPREF1058_RS07595 0.80 +1.8 181,347 + HMPREF1058_RS07595 0.80 +0.6 181,347 + HMPREF1058_RS07595 0.80 -0.2 181,348 - HMPREF1058_RS07595 0.80 +4.9 181,348 - HMPREF1058_RS07595 0.80 -1.7 181,352 - HMPREF1058_RS07595 0.81 -0.7 181,352 - HMPREF1058_RS07595 0.81 -0.6 181,395 + HMPREF1058_RS07595 0.82 +0.2 181,395 + HMPREF1058_RS07595 0.82 -0.8 181,395 + HMPREF1058_RS07595 0.82 -0.5 181,396 - HMPREF1058_RS07595 0.82 -0.7 181,399 + HMPREF1058_RS07595 0.82 -1.7 181,483 + HMPREF1058_RS07595 0.85 -0.8 181,483 + HMPREF1058_RS07595 0.85 +1.0 181,503 - HMPREF1058_RS07595 0.86 +0.3 181,505 - HMPREF1058_RS07595 0.86 -0.5 181,506 + HMPREF1058_RS07595 0.86 -0.9 181,507 - HMPREF1058_RS07595 0.86 +0.2 181,594 - HMPREF1058_RS07595 0.89 -0.8 181,617 + HMPREF1058_RS07595 0.90 +0.9 181,617 + HMPREF1058_RS07595 0.90 +0.5 181,663 + +0.9 181,664 - +0.3 181,665 + +1.0 181,665 + +0.1 181,727 - -0.6 181,727 - -0.6 181,727 - +0.4 181,727 - +0.6 181,727 - +2.6 181,727 - -0.7 181,801 - -1.6 181,807 - -0.6 181,807 - -2.2 181,853 - -1.0 181,853 - -0.9 181,857 + +1.7 181,858 - -0.4 181,861 + -0.4 181,865 - -0.4 181,878 + +0.3 181,909 + +0.9 181,915 - -0.0 181,947 + +0.4 181,947 + -0.0 181,949 + +0.3 181,950 - -0.4 182,002 - +2.2 182,006 + +3.2 182,007 - +0.6 182,007 - +2.2 182,008 + +1.2 182,014 - +2.3 182,124 + -0.6 182,124 + +3.2 182,251 + -0.1 182,273 + +0.1 182,274 - +0.6 182,488 + HMPREF1058_RS07590 0.18 +1.1 182,489 - HMPREF1058_RS07590 0.18 +1.1 182,489 - HMPREF1058_RS07590 0.18 +1.2 182,531 - HMPREF1058_RS07590 0.20 -1.3 182,545 + HMPREF1058_RS07590 0.21 -0.0 182,698 + HMPREF1058_RS07590 0.27 +0.6 182,703 - HMPREF1058_RS07590 0.27 +0.5 182,728 + HMPREF1058_RS07590 0.28 +1.1 182,728 + HMPREF1058_RS07590 0.28 -1.1 182,749 - HMPREF1058_RS07590 0.29 +0.5 182,838 + HMPREF1058_RS07590 0.32 -0.4 182,841 - HMPREF1058_RS07590 0.32 +0.6 182,841 - HMPREF1058_RS07590 0.32 +0.1 182,843 + HMPREF1058_RS07590 0.32 -1.7 182,934 + HMPREF1058_RS07590 0.36 +0.4 182,945 - HMPREF1058_RS07590 0.36 +0.9 182,952 - HMPREF1058_RS07590 0.37 -0.2 183,027 + HMPREF1058_RS07590 0.40 +2.8 183,035 + HMPREF1058_RS07590 0.40 +0.8 183,036 - HMPREF1058_RS07590 0.40 +1.4 183,070 - HMPREF1058_RS07590 0.41 +0.5 183,106 + HMPREF1058_RS07590 0.43 +1.0 183,127 - HMPREF1058_RS07590 0.43 +0.6 183,291 + HMPREF1058_RS07590 0.50 -0.3 183,291 + HMPREF1058_RS07590 0.50 -0.1 183,292 - HMPREF1058_RS07590 0.50 +1.8 183,295 + HMPREF1058_RS07590 0.50 -1.7 183,338 - HMPREF1058_RS07590 0.52 +0.8 183,375 + HMPREF1058_RS07590 0.53 +1.0 183,375 + HMPREF1058_RS07590 0.53 -1.0 183,375 + HMPREF1058_RS07590 0.53 -0.2 183,388 - HMPREF1058_RS07590 0.54 +0.4 183,480 + HMPREF1058_RS07590 0.57 -0.4 183,480 + HMPREF1058_RS07590 0.57 +0.6 183,485 - HMPREF1058_RS07590 0.58 +2.3 183,594 + HMPREF1058_RS07590 0.62 +2.4 183,594 + HMPREF1058_RS07590 0.62 +1.3 183,594 + HMPREF1058_RS07590 0.62 -0.0 183,594 + HMPREF1058_RS07590 0.62 -0.5 183,595 - HMPREF1058_RS07590 0.62 -1.4 183,595 - HMPREF1058_RS07590 0.62 +0.7 183,604 + HMPREF1058_RS07590 0.62 +0.3 183,611 + HMPREF1058_RS07590 0.62 +2.5 183,612 - HMPREF1058_RS07590 0.63 +0.4 183,612 - HMPREF1058_RS07590 0.63 -1.2 183,632 - HMPREF1058_RS07590 0.63 +0.6 183,634 + HMPREF1058_RS07590 0.63 +0.8 183,694 - HMPREF1058_RS07590 0.66 +1.5 183,940 + HMPREF1058_RS07590 0.75 -1.0 184,013 + HMPREF1058_RS07590 0.78 +0.0 184,133 - HMPREF1058_RS07590 0.83 +0.4 184,134 + HMPREF1058_RS07590 0.83 +0.6 184,142 - HMPREF1058_RS07590 0.83 -0.5 184,174 + HMPREF1058_RS07590 0.85 +2.3 184,175 - HMPREF1058_RS07590 0.85 +0.4 184,204 + HMPREF1058_RS07590 0.86 -0.2 184,207 - HMPREF1058_RS07590 0.86 +1.2 184,207 - HMPREF1058_RS07590 0.86 +1.1 184,320 - +0.8 184,320 - +0.9 184,324 - -1.0 184,337 - +0.1 184,372 - +2.3 184,378 - +0.9 184,462 + +0.2 184,551 - +0.8 184,571 - +0.5 184,582 + -1.3 184,652 - -1.9 184,654 - -2.1 184,655 + +1.2 184,656 - -0.2 184,925 - +0.6 185,011 + HMPREF1058_RS07585 0.14 +0.3 185,031 + HMPREF1058_RS07585 0.16 +1.3 185,031 + HMPREF1058_RS07585 0.16 +0.3 185,033 + HMPREF1058_RS07585 0.17 +0.1 185,034 - HMPREF1058_RS07585 0.17 -3.0 185,034 - HMPREF1058_RS07585 0.17 +0.4 185,036 - HMPREF1058_RS07585 0.17 -0.0 185,159 - HMPREF1058_RS07585 0.34 +0.1 185,368 + HMPREF1058_RS07585 0.62 +1.1 185,375 - HMPREF1058_RS07585 0.63 +0.7 185,422 + HMPREF1058_RS07585 0.69 -0.1 185,423 - HMPREF1058_RS07585 0.69 -0.5 185,424 + HMPREF1058_RS07585 0.69 -3.0 185,474 - HMPREF1058_RS07585 0.76 +0.9 185,482 + HMPREF1058_RS07585 0.77 +1.1 185,483 - HMPREF1058_RS07585 0.77 -1.5 185,486 + HMPREF1058_RS07585 0.78 +1.1 185,493 - HMPREF1058_RS07585 0.79 -0.6 185,494 + HMPREF1058_RS07585 0.79 -0.6 185,495 - HMPREF1058_RS07585 0.79 +0.2 185,495 - HMPREF1058_RS07585 0.79 -0.4 185,495 - HMPREF1058_RS07585 0.79 -1.4 185,495 - HMPREF1058_RS07585 0.79 -0.2
Or see this region's nucleotide sequence