Experiment: Galactan from Potato 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS20265 and HMPREF1058_RS07485 are separated by 65 nucleotides HMPREF1058_RS07485 and HMPREF1058_RS07480 are separated by 4 nucleotides
HMPREF1058_RS20265: HMPREF1058_RS20265 - hypothetical protein, at 211,145 to 214,651
_RS20265
HMPREF1058_RS07485: HMPREF1058_RS07485 - PqqD family protein, at 214,717 to 214,986
_RS07485
HMPREF1058_RS07480: HMPREF1058_RS07480 - nucleotidyltransferase family protein, at 214,991 to 216,097
_RS07480
Position (kb) 214
215 Strain fitness (log2 ratio) -2
-1
0
1
2 at 213.802 kb on - strand, within HMPREF1058_RS20265 at 213.826 kb on - strand, within HMPREF1058_RS20265 at 213.826 kb on - strand, within HMPREF1058_RS20265 at 213.927 kb on - strand, within HMPREF1058_RS20265 at 213.954 kb on - strand, within HMPREF1058_RS20265 at 213.991 kb on - strand, within HMPREF1058_RS20265 at 213.992 kb on + strand, within HMPREF1058_RS20265 at 214.016 kb on - strand, within HMPREF1058_RS20265 at 214.017 kb on + strand, within HMPREF1058_RS20265 at 214.017 kb on + strand, within HMPREF1058_RS20265 at 214.017 kb on + strand, within HMPREF1058_RS20265 at 214.018 kb on - strand, within HMPREF1058_RS20265 at 214.018 kb on - strand, within HMPREF1058_RS20265 at 214.112 kb on + strand, within HMPREF1058_RS20265 at 214.123 kb on + strand, within HMPREF1058_RS20265 at 214.123 kb on + strand, within HMPREF1058_RS20265 at 214.129 kb on + strand, within HMPREF1058_RS20265 at 214.211 kb on - strand, within HMPREF1058_RS20265 at 214.243 kb on + strand, within HMPREF1058_RS20265 at 214.334 kb on - strand at 214.369 kb on + strand at 214.386 kb on - strand at 214.421 kb on - strand at 214.421 kb on - strand at 214.450 kb on + strand at 214.539 kb on - strand at 214.539 kb on - strand at 214.560 kb on + strand at 214.569 kb on + strand at 214.593 kb on + strand at 214.593 kb on + strand at 214.594 kb on - strand at 214.637 kb on - strand at 214.706 kb on - strand at 214.708 kb on - strand at 214.717 kb on - strand at 214.752 kb on - strand, within HMPREF1058_RS07485 at 214.770 kb on - strand, within HMPREF1058_RS07485 at 214.782 kb on + strand, within HMPREF1058_RS07485 at 214.809 kb on + strand, within HMPREF1058_RS07485 at 214.908 kb on + strand, within HMPREF1058_RS07485 at 214.908 kb on + strand, within HMPREF1058_RS07485 at 214.909 kb on - strand, within HMPREF1058_RS07485 at 214.950 kb on + strand at 214.977 kb on - strand at 214.977 kb on - strand at 214.979 kb on + strand at 215.108 kb on + strand, within HMPREF1058_RS07480 at 215.109 kb on - strand, within HMPREF1058_RS07480 at 215.111 kb on - strand, within HMPREF1058_RS07480 at 215.111 kb on - strand, within HMPREF1058_RS07480 at 215.336 kb on + strand, within HMPREF1058_RS07480 at 215.340 kb on - strand, within HMPREF1058_RS07480 at 215.373 kb on + strand, within HMPREF1058_RS07480 at 215.373 kb on + strand, within HMPREF1058_RS07480 at 215.374 kb on - strand, within HMPREF1058_RS07480 at 215.374 kb on - strand, within HMPREF1058_RS07480 at 215.374 kb on - strand, within HMPREF1058_RS07480 at 215.464 kb on - strand, within HMPREF1058_RS07480 at 215.494 kb on + strand, within HMPREF1058_RS07480 at 215.497 kb on + strand, within HMPREF1058_RS07480 at 215.497 kb on + strand, within HMPREF1058_RS07480 at 215.498 kb on - strand, within HMPREF1058_RS07480 at 215.543 kb on - strand, within HMPREF1058_RS07480 at 215.546 kb on - strand, within HMPREF1058_RS07480 at 215.665 kb on + strand, within HMPREF1058_RS07480 at 215.700 kb on - strand, within HMPREF1058_RS07480 at 215.804 kb on - strand, within HMPREF1058_RS07480 at 215.804 kb on - strand, within HMPREF1058_RS07480 at 215.860 kb on - strand, within HMPREF1058_RS07480 at 215.918 kb on - strand, within HMPREF1058_RS07480 at 215.983 kb on + strand, within HMPREF1058_RS07480
Per-strain Table
Position Strand Gene LocusTag Fraction Galactan from Potato 2.5 mg/ml (C) remove 213,802 - HMPREF1058_RS20265 0.76 +2.0 213,826 - HMPREF1058_RS20265 0.76 +0.1 213,826 - HMPREF1058_RS20265 0.76 -0.0 213,927 - HMPREF1058_RS20265 0.79 -1.1 213,954 - HMPREF1058_RS20265 0.80 -1.2 213,991 - HMPREF1058_RS20265 0.81 -1.2 213,992 + HMPREF1058_RS20265 0.81 -0.4 214,016 - HMPREF1058_RS20265 0.82 +1.4 214,017 + HMPREF1058_RS20265 0.82 +0.6 214,017 + HMPREF1058_RS20265 0.82 -0.5 214,017 + HMPREF1058_RS20265 0.82 -0.8 214,018 - HMPREF1058_RS20265 0.82 +0.4 214,018 - HMPREF1058_RS20265 0.82 -0.2 214,112 + HMPREF1058_RS20265 0.85 -2.5 214,123 + HMPREF1058_RS20265 0.85 +1.4 214,123 + HMPREF1058_RS20265 0.85 -0.9 214,129 + HMPREF1058_RS20265 0.85 +0.2 214,211 - HMPREF1058_RS20265 0.87 -1.3 214,243 + HMPREF1058_RS20265 0.88 +0.6 214,334 - -0.2 214,369 + +0.7 214,386 - -0.5 214,421 - +0.6 214,421 - +0.0 214,450 + +0.1 214,539 - -0.6 214,539 - -0.4 214,560 + -0.1 214,569 + -0.9 214,593 + +2.1 214,593 + -0.1 214,594 - -1.9 214,637 - -0.2 214,706 - -2.0 214,708 - -0.5 214,717 - +0.3 214,752 - HMPREF1058_RS07485 0.13 +1.9 214,770 - HMPREF1058_RS07485 0.20 -0.5 214,782 + HMPREF1058_RS07485 0.24 +1.9 214,809 + HMPREF1058_RS07485 0.34 -0.9 214,908 + HMPREF1058_RS07485 0.71 -0.1 214,908 + HMPREF1058_RS07485 0.71 -2.1 214,909 - HMPREF1058_RS07485 0.71 +0.9 214,950 + -0.7 214,977 - +0.2 214,977 - +0.3 214,979 + -0.6 215,108 + HMPREF1058_RS07480 0.11 +1.8 215,109 - HMPREF1058_RS07480 0.11 -1.0 215,111 - HMPREF1058_RS07480 0.11 -0.2 215,111 - HMPREF1058_RS07480 0.11 -0.2 215,336 + HMPREF1058_RS07480 0.31 -1.0 215,340 - HMPREF1058_RS07480 0.32 -0.9 215,373 + HMPREF1058_RS07480 0.35 +0.7 215,373 + HMPREF1058_RS07480 0.35 -0.2 215,374 - HMPREF1058_RS07480 0.35 +0.1 215,374 - HMPREF1058_RS07480 0.35 -0.3 215,374 - HMPREF1058_RS07480 0.35 +0.4 215,464 - HMPREF1058_RS07480 0.43 -1.0 215,494 + HMPREF1058_RS07480 0.45 +1.8 215,497 + HMPREF1058_RS07480 0.46 +0.7 215,497 + HMPREF1058_RS07480 0.46 -1.5 215,498 - HMPREF1058_RS07480 0.46 -0.2 215,543 - HMPREF1058_RS07480 0.50 -2.1 215,546 - HMPREF1058_RS07480 0.50 +2.6 215,665 + HMPREF1058_RS07480 0.61 -2.2 215,700 - HMPREF1058_RS07480 0.64 +1.7 215,804 - HMPREF1058_RS07480 0.73 +0.2 215,804 - HMPREF1058_RS07480 0.73 +0.8 215,860 - HMPREF1058_RS07480 0.79 -0.2 215,918 - HMPREF1058_RS07480 0.84 +1.3 215,983 + HMPREF1058_RS07480 0.90 -1.3
Or see this region's nucleotide sequence