Experiment: Galactan from Potato 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS07315 and HMPREF1058_RS07310 are separated by 175 nucleotides HMPREF1058_RS07310 and HMPREF1058_RS07305 are separated by 3 nucleotides HMPREF1058_RS07305 and HMPREF1058_RS07300 are separated by 45 nucleotides
HMPREF1058_RS07315: HMPREF1058_RS07315 - TIGR02757 family protein, at 263,739 to 264,503
_RS07315
HMPREF1058_RS07310: HMPREF1058_RS07310 - glucosamine-6-phosphate deaminase, at 264,679 to 266,667
_RS07310
HMPREF1058_RS07305: HMPREF1058_RS07305 - glucosamine-6-phosphate deaminase, at 266,671 to 267,462
_RS07305
HMPREF1058_RS07300: HMPREF1058_RS07300 - MFS transporter, at 267,508 to 268,743
_RS07300
Position (kb) 264
265
266
267 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 263.697 kb on - strand at 263.701 kb on + strand at 263.702 kb on - strand at 263.704 kb on + strand at 263.705 kb on - strand at 263.706 kb on + strand at 263.735 kb on - strand at 263.775 kb on + strand at 263.775 kb on + strand at 263.836 kb on - strand, within HMPREF1058_RS07315 at 263.852 kb on + strand, within HMPREF1058_RS07315 at 263.949 kb on - strand, within HMPREF1058_RS07315 at 264.126 kb on - strand, within HMPREF1058_RS07315 at 264.129 kb on - strand, within HMPREF1058_RS07315 at 264.129 kb on - strand, within HMPREF1058_RS07315 at 264.130 kb on + strand, within HMPREF1058_RS07315 at 264.130 kb on + strand, within HMPREF1058_RS07315 at 264.131 kb on - strand, within HMPREF1058_RS07315 at 264.132 kb on + strand, within HMPREF1058_RS07315 at 264.132 kb on + strand, within HMPREF1058_RS07315 at 264.132 kb on + strand, within HMPREF1058_RS07315 at 264.133 kb on - strand, within HMPREF1058_RS07315 at 264.133 kb on - strand, within HMPREF1058_RS07315 at 264.134 kb on + strand, within HMPREF1058_RS07315 at 264.134 kb on + strand, within HMPREF1058_RS07315 at 264.137 kb on + strand, within HMPREF1058_RS07315 at 264.138 kb on - strand at 264.386 kb on + strand, within HMPREF1058_RS07315 at 264.395 kb on + strand, within HMPREF1058_RS07315 at 264.508 kb on + strand at 264.508 kb on + strand at 264.509 kb on - strand at 264.509 kb on - strand at 264.509 kb on - strand at 264.652 kb on + strand at 264.659 kb on - strand at 264.663 kb on + strand at 264.675 kb on + strand at 264.680 kb on + strand at 264.688 kb on + strand at 264.692 kb on + strand at 264.693 kb on - strand at 264.698 kb on - strand at 264.719 kb on + strand at 264.855 kb on + strand at 265.091 kb on - strand, within HMPREF1058_RS07310 at 265.094 kb on - strand, within HMPREF1058_RS07310 at 265.158 kb on - strand, within HMPREF1058_RS07310 at 265.205 kb on + strand, within HMPREF1058_RS07310 at 265.206 kb on - strand, within HMPREF1058_RS07310 at 265.206 kb on - strand, within HMPREF1058_RS07310 at 265.320 kb on - strand, within HMPREF1058_RS07310 at 265.397 kb on - strand, within HMPREF1058_RS07310 at 265.397 kb on - strand, within HMPREF1058_RS07310 at 265.448 kb on - strand, within HMPREF1058_RS07310 at 265.633 kb on + strand, within HMPREF1058_RS07310 at 265.653 kb on - strand, within HMPREF1058_RS07310 at 265.665 kb on - strand, within HMPREF1058_RS07310 at 265.701 kb on - strand, within HMPREF1058_RS07310 at 265.701 kb on - strand, within HMPREF1058_RS07310 at 265.753 kb on + strand, within HMPREF1058_RS07310 at 265.753 kb on + strand, within HMPREF1058_RS07310 at 265.753 kb on + strand, within HMPREF1058_RS07310 at 265.753 kb on + strand, within HMPREF1058_RS07310 at 265.754 kb on - strand, within HMPREF1058_RS07310 at 265.849 kb on + strand, within HMPREF1058_RS07310 at 265.850 kb on - strand, within HMPREF1058_RS07310 at 265.967 kb on + strand, within HMPREF1058_RS07310 at 266.131 kb on - strand, within HMPREF1058_RS07310 at 266.156 kb on - strand, within HMPREF1058_RS07310 at 266.168 kb on - strand, within HMPREF1058_RS07310 at 266.168 kb on - strand, within HMPREF1058_RS07310 at 266.199 kb on - strand, within HMPREF1058_RS07310 at 266.255 kb on - strand, within HMPREF1058_RS07310 at 266.290 kb on + strand, within HMPREF1058_RS07310 at 266.346 kb on - strand, within HMPREF1058_RS07310 at 266.353 kb on + strand, within HMPREF1058_RS07310 at 266.369 kb on - strand, within HMPREF1058_RS07310 at 266.546 kb on + strand at 266.627 kb on - strand at 266.653 kb on + strand at 266.668 kb on - strand at 267.551 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Galactan from Potato 2.5 mg/ml (C) remove 263,697 - -0.2 263,701 + -3.2 263,702 - -0.4 263,704 + +0.1 263,705 - -0.8 263,706 + -1.1 263,735 - -1.9 263,775 + -0.9 263,775 + -1.2 263,836 - HMPREF1058_RS07315 0.13 -1.2 263,852 + HMPREF1058_RS07315 0.15 +0.1 263,949 - HMPREF1058_RS07315 0.27 -0.5 264,126 - HMPREF1058_RS07315 0.51 -0.4 264,129 - HMPREF1058_RS07315 0.51 +0.6 264,129 - HMPREF1058_RS07315 0.51 +1.0 264,130 + HMPREF1058_RS07315 0.51 -0.4 264,130 + HMPREF1058_RS07315 0.51 -0.2 264,131 - HMPREF1058_RS07315 0.51 +0.0 264,132 + HMPREF1058_RS07315 0.51 +0.5 264,132 + HMPREF1058_RS07315 0.51 -0.3 264,132 + HMPREF1058_RS07315 0.51 +0.3 264,133 - HMPREF1058_RS07315 0.52 -0.6 264,133 - HMPREF1058_RS07315 0.52 -0.5 264,134 + HMPREF1058_RS07315 0.52 -0.7 264,134 + HMPREF1058_RS07315 0.52 +0.4 264,137 + HMPREF1058_RS07315 0.52 -1.1 264,138 - -0.2 264,386 + HMPREF1058_RS07315 0.85 +1.3 264,395 + HMPREF1058_RS07315 0.86 +0.9 264,508 + +1.2 264,508 + -0.5 264,509 - -1.8 264,509 - -1.0 264,509 - +2.2 264,652 + +1.9 264,659 - +1.9 264,663 + -0.6 264,675 + -0.3 264,680 + -0.3 264,688 + +0.6 264,692 + +0.7 264,693 - +1.9 264,698 - +1.3 264,719 + -0.1 264,855 + +1.2 265,091 - HMPREF1058_RS07310 0.21 -2.1 265,094 - HMPREF1058_RS07310 0.21 +1.1 265,158 - HMPREF1058_RS07310 0.24 +0.6 265,205 + HMPREF1058_RS07310 0.26 +0.5 265,206 - HMPREF1058_RS07310 0.26 +2.6 265,206 - HMPREF1058_RS07310 0.26 +3.1 265,320 - HMPREF1058_RS07310 0.32 +0.9 265,397 - HMPREF1058_RS07310 0.36 +1.7 265,397 - HMPREF1058_RS07310 0.36 +1.3 265,448 - HMPREF1058_RS07310 0.39 +3.6 265,633 + HMPREF1058_RS07310 0.48 -0.9 265,653 - HMPREF1058_RS07310 0.49 +2.6 265,665 - HMPREF1058_RS07310 0.50 +2.6 265,701 - HMPREF1058_RS07310 0.51 +2.2 265,701 - HMPREF1058_RS07310 0.51 +1.7 265,753 + HMPREF1058_RS07310 0.54 +1.8 265,753 + HMPREF1058_RS07310 0.54 +1.6 265,753 + HMPREF1058_RS07310 0.54 +1.4 265,753 + HMPREF1058_RS07310 0.54 +2.1 265,754 - HMPREF1058_RS07310 0.54 +1.9 265,849 + HMPREF1058_RS07310 0.59 +0.5 265,850 - HMPREF1058_RS07310 0.59 +0.4 265,967 + HMPREF1058_RS07310 0.65 +0.6 266,131 - HMPREF1058_RS07310 0.73 +0.8 266,156 - HMPREF1058_RS07310 0.74 +1.1 266,168 - HMPREF1058_RS07310 0.75 +1.1 266,168 - HMPREF1058_RS07310 0.75 +2.2 266,199 - HMPREF1058_RS07310 0.76 +1.3 266,255 - HMPREF1058_RS07310 0.79 +0.8 266,290 + HMPREF1058_RS07310 0.81 -0.5 266,346 - HMPREF1058_RS07310 0.84 +1.0 266,353 + HMPREF1058_RS07310 0.84 -0.3 266,369 - HMPREF1058_RS07310 0.85 +1.9 266,546 + +0.0 266,627 - +2.6 266,653 + +0.2 266,668 - +2.7 267,551 - +0.6
Or see this region's nucleotide sequence