Experiment: Galactan from Potato 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS07310 and HMPREF1058_RS07305 are separated by 3 nucleotides HMPREF1058_RS07305 and HMPREF1058_RS07300 are separated by 45 nucleotides HMPREF1058_RS07300 and HMPREF1058_RS07295 are separated by 18 nucleotides
HMPREF1058_RS07310: HMPREF1058_RS07310 - glucosamine-6-phosphate deaminase, at 264,679 to 266,667
_RS07310
HMPREF1058_RS07305: HMPREF1058_RS07305 - glucosamine-6-phosphate deaminase, at 266,671 to 267,462
_RS07305
HMPREF1058_RS07300: HMPREF1058_RS07300 - MFS transporter, at 267,508 to 268,743
_RS07300
HMPREF1058_RS07295: HMPREF1058_RS07295 - AGE family epimerase/isomerase, at 268,762 to 269,958
_RS07295
Position (kb) 267
268
269 Strain fitness (log2 ratio) -2
-1
0
1
2 at 266.546 kb on + strand at 266.627 kb on - strand at 266.653 kb on + strand at 266.668 kb on - strand at 267.551 kb on - strand at 267.733 kb on - strand, within HMPREF1058_RS07300 at 267.773 kb on - strand, within HMPREF1058_RS07300 at 267.838 kb on - strand, within HMPREF1058_RS07300 at 267.988 kb on - strand, within HMPREF1058_RS07300 at 268.064 kb on - strand, within HMPREF1058_RS07300 at 268.166 kb on - strand, within HMPREF1058_RS07300 at 268.248 kb on + strand, within HMPREF1058_RS07300 at 268.248 kb on + strand, within HMPREF1058_RS07300 at 268.276 kb on - strand, within HMPREF1058_RS07300 at 268.392 kb on + strand, within HMPREF1058_RS07300 at 268.394 kb on + strand, within HMPREF1058_RS07300 at 268.445 kb on + strand, within HMPREF1058_RS07300 at 268.446 kb on - strand, within HMPREF1058_RS07300 at 268.446 kb on - strand, within HMPREF1058_RS07300 at 268.446 kb on - strand, within HMPREF1058_RS07300 at 268.486 kb on + strand, within HMPREF1058_RS07300 at 268.486 kb on + strand, within HMPREF1058_RS07300 at 268.506 kb on + strand, within HMPREF1058_RS07300 at 268.702 kb on + strand at 268.703 kb on - strand at 268.750 kb on - strand at 268.750 kb on - strand at 268.806 kb on + strand at 268.807 kb on - strand at 268.807 kb on - strand at 268.940 kb on + strand, within HMPREF1058_RS07295 at 269.000 kb on + strand, within HMPREF1058_RS07295 at 269.064 kb on - strand, within HMPREF1058_RS07295 at 269.191 kb on - strand, within HMPREF1058_RS07295 at 269.232 kb on + strand, within HMPREF1058_RS07295 at 269.452 kb on - strand, within HMPREF1058_RS07295 at 269.482 kb on + strand, within HMPREF1058_RS07295 at 269.483 kb on - strand, within HMPREF1058_RS07295 at 269.657 kb on + strand, within HMPREF1058_RS07295 at 269.662 kb on - strand, within HMPREF1058_RS07295 at 269.695 kb on - strand, within HMPREF1058_RS07295 at 269.701 kb on + strand, within HMPREF1058_RS07295
Per-strain Table
Position Strand Gene LocusTag Fraction Galactan from Potato 2.5 mg/ml (C) remove 266,546 + +0.0 266,627 - +2.6 266,653 + +0.2 266,668 - +2.7 267,551 - +0.6 267,733 - HMPREF1058_RS07300 0.18 +0.6 267,773 - HMPREF1058_RS07300 0.21 +1.9 267,838 - HMPREF1058_RS07300 0.27 +0.3 267,988 - HMPREF1058_RS07300 0.39 +0.7 268,064 - HMPREF1058_RS07300 0.45 +1.3 268,166 - HMPREF1058_RS07300 0.53 +0.3 268,248 + HMPREF1058_RS07300 0.60 +1.2 268,248 + HMPREF1058_RS07300 0.60 +0.9 268,276 - HMPREF1058_RS07300 0.62 +0.3 268,392 + HMPREF1058_RS07300 0.72 -2.0 268,394 + HMPREF1058_RS07300 0.72 -1.0 268,445 + HMPREF1058_RS07300 0.76 +1.6 268,446 - HMPREF1058_RS07300 0.76 -0.3 268,446 - HMPREF1058_RS07300 0.76 +1.4 268,446 - HMPREF1058_RS07300 0.76 -0.5 268,486 + HMPREF1058_RS07300 0.79 -1.9 268,486 + HMPREF1058_RS07300 0.79 +1.7 268,506 + HMPREF1058_RS07300 0.81 +0.3 268,702 + +0.3 268,703 - -0.1 268,750 - -0.2 268,750 - -1.0 268,806 + +0.3 268,807 - -1.5 268,807 - -1.6 268,940 + HMPREF1058_RS07295 0.15 +0.9 269,000 + HMPREF1058_RS07295 0.20 +0.3 269,064 - HMPREF1058_RS07295 0.25 +1.0 269,191 - HMPREF1058_RS07295 0.36 -1.7 269,232 + HMPREF1058_RS07295 0.39 +1.8 269,452 - HMPREF1058_RS07295 0.58 -1.9 269,482 + HMPREF1058_RS07295 0.60 +0.9 269,483 - HMPREF1058_RS07295 0.60 -0.2 269,657 + HMPREF1058_RS07295 0.75 +1.0 269,662 - HMPREF1058_RS07295 0.75 +0.4 269,695 - HMPREF1058_RS07295 0.78 +0.3 269,701 + HMPREF1058_RS07295 0.78 +0.2
Or see this region's nucleotide sequence