Experiment: Galactan from Potato 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS07295 and HMPREF1058_RS07290 are separated by 12 nucleotides HMPREF1058_RS07290 and HMPREF1058_RS07285 are separated by 305 nucleotides
HMPREF1058_RS07295: HMPREF1058_RS07295 - AGE family epimerase/isomerase, at 268,762 to 269,958
_RS07295
HMPREF1058_RS07290: HMPREF1058_RS07290 - dihydrodipicolinate synthase family protein, at 269,971 to 270,885
_RS07290
HMPREF1058_RS07285: HMPREF1058_RS07285 - ROK family transcriptional regulator, at 271,191 to 272,396
_RS07285
Position (kb) 269
270
271 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 269.000 kb on + strand, within HMPREF1058_RS07295 at 269.064 kb on - strand, within HMPREF1058_RS07295 at 269.191 kb on - strand, within HMPREF1058_RS07295 at 269.232 kb on + strand, within HMPREF1058_RS07295 at 269.452 kb on - strand, within HMPREF1058_RS07295 at 269.482 kb on + strand, within HMPREF1058_RS07295 at 269.483 kb on - strand, within HMPREF1058_RS07295 at 269.657 kb on + strand, within HMPREF1058_RS07295 at 269.662 kb on - strand, within HMPREF1058_RS07295 at 269.695 kb on - strand, within HMPREF1058_RS07295 at 269.701 kb on + strand, within HMPREF1058_RS07295 at 269.744 kb on - strand, within HMPREF1058_RS07295 at 269.744 kb on - strand, within HMPREF1058_RS07295 at 269.748 kb on + strand, within HMPREF1058_RS07295 at 269.749 kb on - strand, within HMPREF1058_RS07295 at 269.749 kb on - strand, within HMPREF1058_RS07295 at 269.754 kb on - strand, within HMPREF1058_RS07295 at 269.759 kb on + strand, within HMPREF1058_RS07295 at 269.760 kb on - strand, within HMPREF1058_RS07295 at 269.841 kb on + strand at 269.844 kb on - strand at 269.844 kb on - strand at 269.895 kb on + strand at 269.898 kb on + strand at 269.941 kb on - strand at 269.941 kb on - strand at 269.941 kb on - strand at 269.943 kb on - strand at 270.046 kb on - strand at 270.128 kb on + strand, within HMPREF1058_RS07290 at 270.147 kb on + strand, within HMPREF1058_RS07290 at 270.239 kb on + strand, within HMPREF1058_RS07290 at 270.239 kb on + strand, within HMPREF1058_RS07290 at 270.240 kb on - strand, within HMPREF1058_RS07290 at 270.340 kb on - strand, within HMPREF1058_RS07290 at 270.381 kb on + strand, within HMPREF1058_RS07290 at 270.383 kb on + strand, within HMPREF1058_RS07290 at 270.384 kb on - strand, within HMPREF1058_RS07290 at 270.449 kb on + strand, within HMPREF1058_RS07290 at 270.450 kb on - strand, within HMPREF1058_RS07290 at 270.450 kb on - strand, within HMPREF1058_RS07290 at 270.450 kb on - strand, within HMPREF1058_RS07290 at 270.477 kb on - strand, within HMPREF1058_RS07290 at 270.760 kb on - strand, within HMPREF1058_RS07290 at 270.760 kb on - strand, within HMPREF1058_RS07290 at 270.764 kb on - strand, within HMPREF1058_RS07290 at 270.801 kb on - strand at 270.819 kb on - strand at 270.840 kb on - strand at 270.925 kb on - strand at 270.947 kb on + strand at 271.013 kb on + strand at 271.156 kb on - strand at 271.162 kb on - strand at 271.268 kb on + strand at 271.286 kb on + strand at 271.318 kb on + strand, within HMPREF1058_RS07285 at 271.319 kb on - strand, within HMPREF1058_RS07285 at 271.328 kb on + strand, within HMPREF1058_RS07285 at 271.335 kb on - strand, within HMPREF1058_RS07285 at 271.514 kb on - strand, within HMPREF1058_RS07285 at 271.626 kb on - strand, within HMPREF1058_RS07285 at 271.682 kb on + strand, within HMPREF1058_RS07285 at 271.682 kb on + strand, within HMPREF1058_RS07285 at 271.683 kb on - strand, within HMPREF1058_RS07285 at 271.683 kb on - strand, within HMPREF1058_RS07285 at 271.683 kb on - strand, within HMPREF1058_RS07285 at 271.686 kb on + strand, within HMPREF1058_RS07285 at 271.686 kb on + strand, within HMPREF1058_RS07285 at 271.686 kb on + strand, within HMPREF1058_RS07285 at 271.686 kb on + strand, within HMPREF1058_RS07285 at 271.691 kb on + strand, within HMPREF1058_RS07285 at 271.781 kb on + strand, within HMPREF1058_RS07285 at 271.782 kb on - strand, within HMPREF1058_RS07285 at 271.797 kb on + strand, within HMPREF1058_RS07285 at 271.798 kb on - strand, within HMPREF1058_RS07285 at 271.798 kb on - strand, within HMPREF1058_RS07285 at 271.799 kb on + strand, within HMPREF1058_RS07285
Per-strain Table
Position Strand Gene LocusTag Fraction Galactan from Potato 2.5 mg/ml (C) remove 269,000 + HMPREF1058_RS07295 0.20 +0.3 269,064 - HMPREF1058_RS07295 0.25 +1.0 269,191 - HMPREF1058_RS07295 0.36 -1.7 269,232 + HMPREF1058_RS07295 0.39 +1.8 269,452 - HMPREF1058_RS07295 0.58 -1.9 269,482 + HMPREF1058_RS07295 0.60 +0.9 269,483 - HMPREF1058_RS07295 0.60 -0.2 269,657 + HMPREF1058_RS07295 0.75 +1.0 269,662 - HMPREF1058_RS07295 0.75 +0.4 269,695 - HMPREF1058_RS07295 0.78 +0.3 269,701 + HMPREF1058_RS07295 0.78 +0.2 269,744 - HMPREF1058_RS07295 0.82 -1.7 269,744 - HMPREF1058_RS07295 0.82 -1.0 269,748 + HMPREF1058_RS07295 0.82 +2.1 269,749 - HMPREF1058_RS07295 0.82 -1.0 269,749 - HMPREF1058_RS07295 0.82 -0.3 269,754 - HMPREF1058_RS07295 0.83 -1.7 269,759 + HMPREF1058_RS07295 0.83 +0.8 269,760 - HMPREF1058_RS07295 0.83 +0.1 269,841 + +0.9 269,844 - -0.1 269,844 - -0.0 269,895 + +2.1 269,898 + +0.4 269,941 - -0.5 269,941 - -0.2 269,941 - +0.4 269,943 - -0.1 270,046 - -0.3 270,128 + HMPREF1058_RS07290 0.17 -0.1 270,147 + HMPREF1058_RS07290 0.19 +1.7 270,239 + HMPREF1058_RS07290 0.29 -0.6 270,239 + HMPREF1058_RS07290 0.29 +2.6 270,240 - HMPREF1058_RS07290 0.29 +0.7 270,340 - HMPREF1058_RS07290 0.40 +0.1 270,381 + HMPREF1058_RS07290 0.45 +0.8 270,383 + HMPREF1058_RS07290 0.45 +1.8 270,384 - HMPREF1058_RS07290 0.45 -0.1 270,449 + HMPREF1058_RS07290 0.52 +1.2 270,450 - HMPREF1058_RS07290 0.52 -0.5 270,450 - HMPREF1058_RS07290 0.52 -0.7 270,450 - HMPREF1058_RS07290 0.52 -1.8 270,477 - HMPREF1058_RS07290 0.55 +1.5 270,760 - HMPREF1058_RS07290 0.86 +1.1 270,760 - HMPREF1058_RS07290 0.86 +0.2 270,764 - HMPREF1058_RS07290 0.87 +0.3 270,801 - +0.8 270,819 - -0.1 270,840 - +2.0 270,925 - +2.6 270,947 + -0.8 271,013 + -1.2 271,156 - -1.5 271,162 - -0.7 271,268 + -0.6 271,286 + -2.5 271,318 + HMPREF1058_RS07285 0.11 -3.0 271,319 - HMPREF1058_RS07285 0.11 -2.3 271,328 + HMPREF1058_RS07285 0.11 -2.2 271,335 - HMPREF1058_RS07285 0.12 -1.7 271,514 - HMPREF1058_RS07285 0.27 -3.1 271,626 - HMPREF1058_RS07285 0.36 -0.9 271,682 + HMPREF1058_RS07285 0.41 -2.9 271,682 + HMPREF1058_RS07285 0.41 -1.4 271,683 - HMPREF1058_RS07285 0.41 -0.4 271,683 - HMPREF1058_RS07285 0.41 +1.6 271,683 - HMPREF1058_RS07285 0.41 -1.1 271,686 + HMPREF1058_RS07285 0.41 -3.4 271,686 + HMPREF1058_RS07285 0.41 -3.4 271,686 + HMPREF1058_RS07285 0.41 -1.1 271,686 + HMPREF1058_RS07285 0.41 -0.4 271,691 + HMPREF1058_RS07285 0.41 -0.0 271,781 + HMPREF1058_RS07285 0.49 -1.2 271,782 - HMPREF1058_RS07285 0.49 -0.4 271,797 + HMPREF1058_RS07285 0.50 -0.2 271,798 - HMPREF1058_RS07285 0.50 -1.2 271,798 - HMPREF1058_RS07285 0.50 -2.2 271,799 + HMPREF1058_RS07285 0.50 -1.5
Or see this region's nucleotide sequence