Experiment: Galactan from Potato 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS07235 and HMPREF1058_RS07230 are separated by 14 nucleotides HMPREF1058_RS07230 and HMPREF1058_RS07225 are separated by 36 nucleotides
HMPREF1058_RS07235: HMPREF1058_RS07235 - A/G-specific adenine glycosylase, at 282,170 to 283,228
_RS07235
HMPREF1058_RS07230: HMPREF1058_RS07230 - single-stranded DNA-binding protein, at 283,243 to 283,710
_RS07230
HMPREF1058_RS07225: HMPREF1058_RS07225 - gliding motility-associated protein GldE, at 283,747 to 285,099
_RS07225
Position (kb) 283
284 Strain fitness (log2 ratio) -2
-1
0
1
2 at 282.279 kb on + strand, within HMPREF1058_RS07235 at 282.280 kb on - strand, within HMPREF1058_RS07235 at 282.311 kb on + strand, within HMPREF1058_RS07235 at 282.314 kb on + strand, within HMPREF1058_RS07235 at 282.314 kb on + strand, within HMPREF1058_RS07235 at 282.315 kb on - strand, within HMPREF1058_RS07235 at 282.315 kb on - strand, within HMPREF1058_RS07235 at 282.476 kb on + strand, within HMPREF1058_RS07235 at 282.476 kb on + strand, within HMPREF1058_RS07235 at 282.477 kb on - strand, within HMPREF1058_RS07235 at 282.477 kb on - strand, within HMPREF1058_RS07235 at 282.515 kb on - strand, within HMPREF1058_RS07235 at 282.692 kb on + strand, within HMPREF1058_RS07235 at 282.693 kb on - strand, within HMPREF1058_RS07235 at 282.858 kb on - strand, within HMPREF1058_RS07235 at 282.862 kb on - strand, within HMPREF1058_RS07235 at 282.862 kb on - strand, within HMPREF1058_RS07235 at 282.863 kb on + strand, within HMPREF1058_RS07235 at 282.863 kb on + strand, within HMPREF1058_RS07235 at 282.863 kb on + strand, within HMPREF1058_RS07235 at 282.863 kb on + strand, within HMPREF1058_RS07235 at 282.864 kb on - strand, within HMPREF1058_RS07235 at 282.867 kb on + strand, within HMPREF1058_RS07235 at 282.867 kb on + strand, within HMPREF1058_RS07235 at 282.867 kb on + strand, within HMPREF1058_RS07235 at 282.890 kb on - strand, within HMPREF1058_RS07235 at 282.892 kb on - strand, within HMPREF1058_RS07235 at 282.896 kb on - strand, within HMPREF1058_RS07235 at 282.914 kb on - strand, within HMPREF1058_RS07235 at 282.914 kb on - strand, within HMPREF1058_RS07235 at 282.916 kb on - strand, within HMPREF1058_RS07235 at 282.945 kb on + strand, within HMPREF1058_RS07235 at 282.980 kb on + strand, within HMPREF1058_RS07235 at 283.575 kb on + strand, within HMPREF1058_RS07230 at 283.603 kb on + strand, within HMPREF1058_RS07230 at 283.784 kb on + strand at 283.796 kb on + strand at 283.829 kb on + strand at 283.829 kb on + strand at 283.833 kb on + strand at 283.833 kb on + strand at 283.850 kb on + strand at 283.858 kb on + strand at 283.959 kb on + strand, within HMPREF1058_RS07225 at 284.007 kb on + strand, within HMPREF1058_RS07225 at 284.016 kb on + strand, within HMPREF1058_RS07225 at 284.030 kb on + strand, within HMPREF1058_RS07225 at 284.391 kb on + strand, within HMPREF1058_RS07225 at 284.493 kb on + strand, within HMPREF1058_RS07225
Per-strain Table
Position Strand Gene LocusTag Fraction Galactan from Potato 2.5 mg/ml (C) remove 282,279 + HMPREF1058_RS07235 0.10 +1.9 282,280 - HMPREF1058_RS07235 0.10 -0.0 282,311 + HMPREF1058_RS07235 0.13 +0.4 282,314 + HMPREF1058_RS07235 0.14 +0.3 282,314 + HMPREF1058_RS07235 0.14 -0.7 282,315 - HMPREF1058_RS07235 0.14 +0.6 282,315 - HMPREF1058_RS07235 0.14 -0.0 282,476 + HMPREF1058_RS07235 0.29 -0.7 282,476 + HMPREF1058_RS07235 0.29 +0.1 282,477 - HMPREF1058_RS07235 0.29 -1.1 282,477 - HMPREF1058_RS07235 0.29 +0.6 282,515 - HMPREF1058_RS07235 0.33 -0.5 282,692 + HMPREF1058_RS07235 0.49 -1.7 282,693 - HMPREF1058_RS07235 0.49 -1.5 282,858 - HMPREF1058_RS07235 0.65 -1.3 282,862 - HMPREF1058_RS07235 0.65 +0.9 282,862 - HMPREF1058_RS07235 0.65 +2.0 282,863 + HMPREF1058_RS07235 0.65 +0.4 282,863 + HMPREF1058_RS07235 0.65 +0.5 282,863 + HMPREF1058_RS07235 0.65 -0.1 282,863 + HMPREF1058_RS07235 0.65 -0.4 282,864 - HMPREF1058_RS07235 0.66 -0.4 282,867 + HMPREF1058_RS07235 0.66 -0.4 282,867 + HMPREF1058_RS07235 0.66 -0.7 282,867 + HMPREF1058_RS07235 0.66 -1.8 282,890 - HMPREF1058_RS07235 0.68 -1.0 282,892 - HMPREF1058_RS07235 0.68 -0.7 282,896 - HMPREF1058_RS07235 0.69 -1.3 282,914 - HMPREF1058_RS07235 0.70 -2.4 282,914 - HMPREF1058_RS07235 0.70 +0.5 282,916 - HMPREF1058_RS07235 0.70 -0.2 282,945 + HMPREF1058_RS07235 0.73 -0.2 282,980 + HMPREF1058_RS07235 0.76 -0.5 283,575 + HMPREF1058_RS07230 0.71 +1.0 283,603 + HMPREF1058_RS07230 0.77 +0.5 283,784 + +0.2 283,796 + +0.5 283,829 + +1.4 283,829 + +0.2 283,833 + +1.0 283,833 + +0.1 283,850 + +1.2 283,858 + -0.1 283,959 + HMPREF1058_RS07225 0.16 +1.5 284,007 + HMPREF1058_RS07225 0.19 +0.6 284,016 + HMPREF1058_RS07225 0.20 +2.0 284,030 + HMPREF1058_RS07225 0.21 +0.7 284,391 + HMPREF1058_RS07225 0.48 -0.2 284,493 + HMPREF1058_RS07225 0.55 +1.1
Or see this region's nucleotide sequence