Experiment: Galactan from Potato 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS07095 and HMPREF1058_RS07090 are separated by 29 nucleotides HMPREF1058_RS07090 and HMPREF1058_RS07085 are separated by 2 nucleotides HMPREF1058_RS07085 and HMPREF1058_RS07080 are separated by 77 nucleotides HMPREF1058_RS07080 and HMPREF1058_RS07075 are separated by 210 nucleotides
HMPREF1058_RS07095: HMPREF1058_RS07095 - PD40 domain-containing protein, at 317,974 to 321,234
_RS07095
HMPREF1058_RS07090: HMPREF1058_RS07090 - hypothetical protein, at 321,264 to 321,530
_RS07090
HMPREF1058_RS07085: HMPREF1058_RS07085 - phage holin family protein, at 321,533 to 321,889
_RS07085
HMPREF1058_RS07080: HMPREF1058_RS07080 - YtxH domain-containing protein, at 321,967 to 322,164
_RS07080
HMPREF1058_RS07075: HMPREF1058_RS07075 - SPOR domain-containing protein, at 322,375 to 322,872
_RS07075
Position (kb) 321
322 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 320.377 kb on + strand, within HMPREF1058_RS07095 at 320.410 kb on + strand, within HMPREF1058_RS07095 at 320.411 kb on - strand, within HMPREF1058_RS07095 at 320.411 kb on - strand, within HMPREF1058_RS07095 at 320.481 kb on + strand, within HMPREF1058_RS07095 at 320.534 kb on - strand, within HMPREF1058_RS07095 at 320.537 kb on + strand, within HMPREF1058_RS07095 at 320.709 kb on - strand, within HMPREF1058_RS07095 at 320.742 kb on + strand, within HMPREF1058_RS07095 at 320.743 kb on - strand, within HMPREF1058_RS07095 at 320.803 kb on + strand, within HMPREF1058_RS07095 at 320.804 kb on - strand, within HMPREF1058_RS07095 at 320.854 kb on + strand, within HMPREF1058_RS07095 at 320.892 kb on - strand, within HMPREF1058_RS07095 at 320.923 kb on - strand at 320.974 kb on - strand at 321.057 kb on + strand at 321.081 kb on + strand at 321.111 kb on - strand at 321.182 kb on + strand at 321.183 kb on - strand at 321.221 kb on - strand at 321.258 kb on - strand at 321.260 kb on + strand at 321.265 kb on + strand at 321.287 kb on - strand at 321.351 kb on - strand, within HMPREF1058_RS07090 at 321.448 kb on - strand, within HMPREF1058_RS07090 at 321.661 kb on + strand, within HMPREF1058_RS07085 at 321.671 kb on + strand, within HMPREF1058_RS07085 at 321.671 kb on + strand, within HMPREF1058_RS07085 at 321.690 kb on + strand, within HMPREF1058_RS07085 at 321.700 kb on + strand, within HMPREF1058_RS07085 at 321.700 kb on + strand, within HMPREF1058_RS07085 at 321.711 kb on + strand, within HMPREF1058_RS07085 at 321.711 kb on + strand, within HMPREF1058_RS07085 at 321.712 kb on - strand, within HMPREF1058_RS07085 at 321.725 kb on - strand, within HMPREF1058_RS07085 at 321.735 kb on - strand, within HMPREF1058_RS07085 at 321.775 kb on + strand, within HMPREF1058_RS07085 at 321.775 kb on + strand, within HMPREF1058_RS07085 at 321.775 kb on + strand, within HMPREF1058_RS07085 at 321.792 kb on - strand, within HMPREF1058_RS07085 at 321.804 kb on - strand, within HMPREF1058_RS07085 at 321.804 kb on - strand, within HMPREF1058_RS07085 at 321.862 kb on + strand at 321.863 kb on - strand at 321.947 kb on + strand at 321.947 kb on + strand at 321.947 kb on + strand at 322.024 kb on + strand, within HMPREF1058_RS07080 at 322.025 kb on - strand, within HMPREF1058_RS07080 at 322.025 kb on - strand, within HMPREF1058_RS07080 at 322.042 kb on - strand, within HMPREF1058_RS07080 at 322.046 kb on - strand, within HMPREF1058_RS07080 at 322.149 kb on + strand at 322.149 kb on + strand at 322.149 kb on + strand at 322.305 kb on + strand at 322.307 kb on + strand at 322.327 kb on + strand at 322.327 kb on + strand at 322.329 kb on + strand at 322.348 kb on + strand at 322.349 kb on - strand at 322.352 kb on - strand at 322.352 kb on - strand at 322.386 kb on - strand at 322.454 kb on - strand, within HMPREF1058_RS07075 at 322.465 kb on + strand, within HMPREF1058_RS07075 at 322.465 kb on + strand, within HMPREF1058_RS07075
Per-strain Table
Position Strand Gene LocusTag Fraction Galactan from Potato 2.5 mg/ml (C) remove 320,377 + HMPREF1058_RS07095 0.74 +0.9 320,410 + HMPREF1058_RS07095 0.75 +0.0 320,411 - HMPREF1058_RS07095 0.75 +0.1 320,411 - HMPREF1058_RS07095 0.75 -1.0 320,481 + HMPREF1058_RS07095 0.77 -0.2 320,534 - HMPREF1058_RS07095 0.79 +0.0 320,537 + HMPREF1058_RS07095 0.79 -0.3 320,709 - HMPREF1058_RS07095 0.84 +0.4 320,742 + HMPREF1058_RS07095 0.85 +0.3 320,743 - HMPREF1058_RS07095 0.85 +0.3 320,803 + HMPREF1058_RS07095 0.87 +1.2 320,804 - HMPREF1058_RS07095 0.87 +0.1 320,854 + HMPREF1058_RS07095 0.88 +0.5 320,892 - HMPREF1058_RS07095 0.89 -0.2 320,923 - -1.2 320,974 - +0.1 321,057 + -0.3 321,081 + +0.1 321,111 - +0.4 321,182 + +0.0 321,183 - +0.2 321,221 - -0.6 321,258 - -0.4 321,260 + -1.4 321,265 + -1.3 321,287 - +0.9 321,351 - HMPREF1058_RS07090 0.33 +0.5 321,448 - HMPREF1058_RS07090 0.69 +0.7 321,661 + HMPREF1058_RS07085 0.36 -1.7 321,671 + HMPREF1058_RS07085 0.39 -0.9 321,671 + HMPREF1058_RS07085 0.39 +1.6 321,690 + HMPREF1058_RS07085 0.44 +0.5 321,700 + HMPREF1058_RS07085 0.47 -0.3 321,700 + HMPREF1058_RS07085 0.47 +1.3 321,711 + HMPREF1058_RS07085 0.50 +1.4 321,711 + HMPREF1058_RS07085 0.50 -0.0 321,712 - HMPREF1058_RS07085 0.50 +2.8 321,725 - HMPREF1058_RS07085 0.54 -1.0 321,735 - HMPREF1058_RS07085 0.57 -0.1 321,775 + HMPREF1058_RS07085 0.68 +1.6 321,775 + HMPREF1058_RS07085 0.68 -0.6 321,775 + HMPREF1058_RS07085 0.68 -0.9 321,792 - HMPREF1058_RS07085 0.73 +1.6 321,804 - HMPREF1058_RS07085 0.76 -0.5 321,804 - HMPREF1058_RS07085 0.76 -1.2 321,862 + +1.1 321,863 - +1.6 321,947 + +0.3 321,947 + +2.6 321,947 + +0.6 322,024 + HMPREF1058_RS07080 0.29 -0.6 322,025 - HMPREF1058_RS07080 0.29 +0.8 322,025 - HMPREF1058_RS07080 0.29 +3.2 322,042 - HMPREF1058_RS07080 0.38 -0.5 322,046 - HMPREF1058_RS07080 0.40 -0.1 322,149 + +0.3 322,149 + -1.1 322,149 + -2.1 322,305 + -0.2 322,307 + +0.5 322,327 + +0.3 322,327 + -0.6 322,329 + -0.3 322,348 + +0.1 322,349 - -1.0 322,352 - +0.3 322,352 - +3.6 322,386 - -2.1 322,454 - HMPREF1058_RS07075 0.16 -3.1 322,465 + HMPREF1058_RS07075 0.18 -1.7 322,465 + HMPREF1058_RS07075 0.18 -0.2
Or see this region's nucleotide sequence