Experiment: Galactan from Potato 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS06950 and HMPREF1058_RS06945 are separated by 361 nucleotides HMPREF1058_RS06945 and HMPREF1058_RS06940 are separated by 27 nucleotides
HMPREF1058_RS06950: HMPREF1058_RS06950 - hypothetical protein, at 349,787 to 350,758
_RS06950
HMPREF1058_RS06945: HMPREF1058_RS06945 - tRNA-Thr, at 351,120 to 351,192
_RS06945
HMPREF1058_RS06940: HMPREF1058_RS06940 - carboxypeptidase regulatory-like domain-containing protein, at 351,220 to 352,044
_RS06940
Position (kb) 351
352 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 350.312 kb on + strand, within HMPREF1058_RS06950 at 350.312 kb on + strand, within HMPREF1058_RS06950 at 350.675 kb on - strand at 350.964 kb on + strand at 351.005 kb on + strand at 351.006 kb on - strand at 351.067 kb on + strand at 351.067 kb on + strand at 351.068 kb on - strand at 351.069 kb on + strand at 351.070 kb on - strand at 351.155 kb on + strand, within HMPREF1058_RS06945 at 351.231 kb on - strand at 351.248 kb on + strand at 351.248 kb on + strand at 351.248 kb on + strand at 351.248 kb on + strand at 351.249 kb on - strand at 351.251 kb on + strand at 351.295 kb on + strand at 351.296 kb on - strand at 351.305 kb on - strand, within HMPREF1058_RS06940 at 351.359 kb on + strand, within HMPREF1058_RS06940 at 351.397 kb on + strand, within HMPREF1058_RS06940 at 351.455 kb on - strand, within HMPREF1058_RS06940 at 351.541 kb on + strand, within HMPREF1058_RS06940 at 351.605 kb on + strand, within HMPREF1058_RS06940 at 351.606 kb on - strand, within HMPREF1058_RS06940 at 351.608 kb on - strand, within HMPREF1058_RS06940 at 351.608 kb on - strand, within HMPREF1058_RS06940 at 351.608 kb on - strand, within HMPREF1058_RS06940 at 351.646 kb on - strand, within HMPREF1058_RS06940 at 351.646 kb on - strand, within HMPREF1058_RS06940 at 351.667 kb on - strand, within HMPREF1058_RS06940 at 351.769 kb on - strand, within HMPREF1058_RS06940 at 351.776 kb on + strand, within HMPREF1058_RS06940 at 351.780 kb on + strand, within HMPREF1058_RS06940 at 351.786 kb on + strand, within HMPREF1058_RS06940 at 351.792 kb on + strand, within HMPREF1058_RS06940 at 351.836 kb on + strand, within HMPREF1058_RS06940 at 351.836 kb on + strand, within HMPREF1058_RS06940 at 351.836 kb on + strand, within HMPREF1058_RS06940 at 351.978 kb on - strand at 352.051 kb on - strand at 352.117 kb on - strand at 352.131 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Galactan from Potato 2.5 mg/ml (C) remove 350,312 + HMPREF1058_RS06950 0.54 -0.4 350,312 + HMPREF1058_RS06950 0.54 +0.3 350,675 - -3.6 350,964 + -0.1 351,005 + -0.9 351,006 - -0.7 351,067 + -0.4 351,067 + +1.3 351,068 - +0.3 351,069 + +0.7 351,070 - -1.2 351,155 + HMPREF1058_RS06945 0.48 +1.3 351,231 - -0.5 351,248 + +0.2 351,248 + -0.2 351,248 + -0.4 351,248 + -0.8 351,249 - +1.8 351,251 + +0.6 351,295 + -0.5 351,296 - +0.2 351,305 - HMPREF1058_RS06940 0.10 -0.9 351,359 + HMPREF1058_RS06940 0.17 +0.3 351,397 + HMPREF1058_RS06940 0.21 -0.3 351,455 - HMPREF1058_RS06940 0.28 +1.6 351,541 + HMPREF1058_RS06940 0.39 -1.3 351,605 + HMPREF1058_RS06940 0.47 -0.9 351,606 - HMPREF1058_RS06940 0.47 +0.5 351,608 - HMPREF1058_RS06940 0.47 +0.0 351,608 - HMPREF1058_RS06940 0.47 -1.0 351,608 - HMPREF1058_RS06940 0.47 +1.9 351,646 - HMPREF1058_RS06940 0.52 -0.3 351,646 - HMPREF1058_RS06940 0.52 +0.3 351,667 - HMPREF1058_RS06940 0.54 +0.0 351,769 - HMPREF1058_RS06940 0.67 +1.8 351,776 + HMPREF1058_RS06940 0.67 -2.8 351,780 + HMPREF1058_RS06940 0.68 +0.8 351,786 + HMPREF1058_RS06940 0.69 -0.6 351,792 + HMPREF1058_RS06940 0.69 -1.1 351,836 + HMPREF1058_RS06940 0.75 +1.2 351,836 + HMPREF1058_RS06940 0.75 -0.7 351,836 + HMPREF1058_RS06940 0.75 -0.7 351,978 - -0.7 352,051 - -1.4 352,117 - +1.6 352,131 + -0.2
Or see this region's nucleotide sequence