Experiment: Galactan from Potato 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS06930 and HMPREF1058_RS06925 are separated by 16 nucleotides HMPREF1058_RS06925 and HMPREF1058_RS06920 are separated by 24 nucleotides
HMPREF1058_RS06930: HMPREF1058_RS06930 - asparagine synthase B, at 352,823 to 354,493
_RS06930
HMPREF1058_RS06925: HMPREF1058_RS06925 - glutamate synthase subunit beta, at 354,510 to 355,850
_RS06925
HMPREF1058_RS06920: HMPREF1058_RS06920 - glutamate synthase large subunit, at 355,875 to 360,353
_RS06920
Position (kb) 354
355
356 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 353.550 kb on + strand, within HMPREF1058_RS06930 at 353.550 kb on + strand, within HMPREF1058_RS06930 at 353.553 kb on + strand, within HMPREF1058_RS06930 at 353.593 kb on + strand, within HMPREF1058_RS06930 at 353.799 kb on - strand, within HMPREF1058_RS06930 at 353.858 kb on + strand, within HMPREF1058_RS06930 at 353.899 kb on - strand, within HMPREF1058_RS06930 at 353.952 kb on + strand, within HMPREF1058_RS06930 at 353.953 kb on - strand, within HMPREF1058_RS06930 at 353.956 kb on - strand, within HMPREF1058_RS06930 at 354.050 kb on + strand, within HMPREF1058_RS06930 at 354.051 kb on - strand, within HMPREF1058_RS06930 at 354.051 kb on - strand, within HMPREF1058_RS06930 at 354.053 kb on - strand, within HMPREF1058_RS06930 at 354.054 kb on + strand, within HMPREF1058_RS06930 at 354.055 kb on - strand, within HMPREF1058_RS06930 at 354.055 kb on - strand, within HMPREF1058_RS06930 at 354.055 kb on - strand, within HMPREF1058_RS06930 at 354.056 kb on + strand, within HMPREF1058_RS06930 at 354.056 kb on + strand, within HMPREF1058_RS06930 at 354.056 kb on + strand, within HMPREF1058_RS06930 at 354.056 kb on + strand, within HMPREF1058_RS06930 at 354.057 kb on - strand, within HMPREF1058_RS06930 at 354.115 kb on - strand, within HMPREF1058_RS06930 at 354.160 kb on + strand, within HMPREF1058_RS06930 at 354.220 kb on - strand, within HMPREF1058_RS06930 at 354.258 kb on + strand, within HMPREF1058_RS06930 at 354.304 kb on - strand, within HMPREF1058_RS06930 at 354.465 kb on - strand at 354.493 kb on + strand at 354.494 kb on - strand at 354.613 kb on - strand at 354.966 kb on + strand, within HMPREF1058_RS06925 at 355.306 kb on - strand, within HMPREF1058_RS06925 at 355.606 kb on - strand, within HMPREF1058_RS06925 at 355.606 kb on - strand, within HMPREF1058_RS06925 at 355.769 kb on + strand at 355.823 kb on + strand at 355.879 kb on + strand at 355.899 kb on + strand at 355.946 kb on + strand at 355.947 kb on - strand at 355.960 kb on - strand at 356.038 kb on + strand at 356.233 kb on + strand at 356.254 kb on - strand at 356.262 kb on + strand at 356.323 kb on + strand, within HMPREF1058_RS06920 at 356.348 kb on - strand, within HMPREF1058_RS06920 at 356.742 kb on + strand, within HMPREF1058_RS06920 at 356.769 kb on + strand, within HMPREF1058_RS06920 at 356.770 kb on - strand, within HMPREF1058_RS06920 at 356.823 kb on + strand, within HMPREF1058_RS06920 at 356.823 kb on + strand at 356.824 kb on - strand, within HMPREF1058_RS06920
Per-strain Table
Position Strand Gene LocusTag Fraction Galactan from Potato 2.5 mg/ml (C) remove 353,550 + HMPREF1058_RS06930 0.44 +0.9 353,550 + HMPREF1058_RS06930 0.44 +0.4 353,553 + HMPREF1058_RS06930 0.44 +1.0 353,593 + HMPREF1058_RS06930 0.46 +1.8 353,799 - HMPREF1058_RS06930 0.58 +0.5 353,858 + HMPREF1058_RS06930 0.62 -1.7 353,899 - HMPREF1058_RS06930 0.64 -0.2 353,952 + HMPREF1058_RS06930 0.68 -1.0 353,953 - HMPREF1058_RS06930 0.68 -0.2 353,956 - HMPREF1058_RS06930 0.68 -0.4 354,050 + HMPREF1058_RS06930 0.73 -2.0 354,051 - HMPREF1058_RS06930 0.73 -0.8 354,051 - HMPREF1058_RS06930 0.73 +1.7 354,053 - HMPREF1058_RS06930 0.74 -0.5 354,054 + HMPREF1058_RS06930 0.74 +0.6 354,055 - HMPREF1058_RS06930 0.74 +0.1 354,055 - HMPREF1058_RS06930 0.74 -0.7 354,055 - HMPREF1058_RS06930 0.74 +0.7 354,056 + HMPREF1058_RS06930 0.74 -0.9 354,056 + HMPREF1058_RS06930 0.74 +2.6 354,056 + HMPREF1058_RS06930 0.74 +0.0 354,056 + HMPREF1058_RS06930 0.74 -1.1 354,057 - HMPREF1058_RS06930 0.74 +0.7 354,115 - HMPREF1058_RS06930 0.77 +0.0 354,160 + HMPREF1058_RS06930 0.80 +0.4 354,220 - HMPREF1058_RS06930 0.84 +1.1 354,258 + HMPREF1058_RS06930 0.86 -0.1 354,304 - HMPREF1058_RS06930 0.89 -1.3 354,465 - -1.7 354,493 + -2.2 354,494 - -2.5 354,613 - +0.0 354,966 + HMPREF1058_RS06925 0.34 -0.3 355,306 - HMPREF1058_RS06925 0.59 +0.3 355,606 - HMPREF1058_RS06925 0.82 +1.1 355,606 - HMPREF1058_RS06925 0.82 +1.6 355,769 + -0.4 355,823 + -0.1 355,879 + -0.9 355,899 + +2.0 355,946 + -0.7 355,947 - -2.1 355,960 - -1.2 356,038 + -1.3 356,233 + +0.3 356,254 - -0.5 356,262 + +0.0 356,323 + HMPREF1058_RS06920 0.10 -0.2 356,348 - HMPREF1058_RS06920 0.11 -0.1 356,742 + HMPREF1058_RS06920 0.19 -1.0 356,769 + HMPREF1058_RS06920 0.20 +0.1 356,770 - HMPREF1058_RS06920 0.20 +1.8 356,823 + HMPREF1058_RS06920 0.21 -0.4 356,823 + +3.9 356,824 - HMPREF1058_RS06920 0.21 -1.8
Or see this region's nucleotide sequence