Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS06700

Experiment: Galactan from Potato 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS06710 and HMPREF1058_RS06705 overlap by 16 nucleotidesHMPREF1058_RS06705 and HMPREF1058_RS06700 are separated by 4 nucleotidesHMPREF1058_RS06700 and HMPREF1058_RS06695 are separated by 7 nucleotides HMPREF1058_RS06710: HMPREF1058_RS06710 - DUF4422 domain-containing protein, at 413,651 to 414,475 _RS06710 HMPREF1058_RS06705: HMPREF1058_RS06705 - acyltransferase, at 414,460 to 415,071 _RS06705 HMPREF1058_RS06700: HMPREF1058_RS06700 - glycosyltransferase family 2 protein, at 415,076 to 416,236 _RS06700 HMPREF1058_RS06695: HMPREF1058_RS06695 - glycosyltransferase, at 416,244 to 417,368 _RS06695 Position (kb) 415 416 417Strain fitness (log2 ratio) -2 -1 0 1 2 3at 414.125 kb on + strand, within HMPREF1058_RS06710at 414.176 kb on - strand, within HMPREF1058_RS06710at 414.177 kb on - strand, within HMPREF1058_RS06710at 414.259 kb on + strand, within HMPREF1058_RS06710at 414.333 kb on - strand, within HMPREF1058_RS06710at 414.333 kb on - strand, within HMPREF1058_RS06710at 414.334 kb on + strand, within HMPREF1058_RS06710at 414.334 kb on + strand, within HMPREF1058_RS06710at 414.334 kb on + strand, within HMPREF1058_RS06710at 414.338 kb on - strand, within HMPREF1058_RS06710at 414.349 kb on + strand, within HMPREF1058_RS06710at 414.354 kb on - strand, within HMPREF1058_RS06710at 414.450 kb on - strandat 414.492 kb on + strandat 414.536 kb on + strand, within HMPREF1058_RS06705at 414.545 kb on - strand, within HMPREF1058_RS06705at 414.610 kb on + strand, within HMPREF1058_RS06705at 414.629 kb on - strand, within HMPREF1058_RS06705at 414.636 kb on + strand, within HMPREF1058_RS06705at 414.636 kb on + strand, within HMPREF1058_RS06705at 414.636 kb on + strandat 414.636 kb on + strand, within HMPREF1058_RS06705at 414.637 kb on - strand, within HMPREF1058_RS06705at 414.637 kb on - strand, within HMPREF1058_RS06705at 414.715 kb on + strand, within HMPREF1058_RS06705at 414.730 kb on + strand, within HMPREF1058_RS06705at 414.924 kb on - strand, within HMPREF1058_RS06705at 414.954 kb on - strand, within HMPREF1058_RS06705at 415.051 kb on + strandat 415.052 kb on - strandat 415.063 kb on + strandat 415.064 kb on - strandat 415.156 kb on - strandat 415.185 kb on + strandat 415.185 kb on + strandat 415.185 kb on + strandat 415.189 kb on + strandat 415.189 kb on + strandat 415.218 kb on + strand, within HMPREF1058_RS06700at 415.221 kb on - strand, within HMPREF1058_RS06700at 415.240 kb on + strand, within HMPREF1058_RS06700at 415.402 kb on + strand, within HMPREF1058_RS06700at 415.514 kb on - strand, within HMPREF1058_RS06700at 415.515 kb on + strand, within HMPREF1058_RS06700at 415.515 kb on + strand, within HMPREF1058_RS06700at 415.516 kb on - strand, within HMPREF1058_RS06700at 415.516 kb on - strand, within HMPREF1058_RS06700at 415.516 kb on - strand, within HMPREF1058_RS06700at 415.770 kb on - strand, within HMPREF1058_RS06700at 415.770 kb on - strand, within HMPREF1058_RS06700at 415.839 kb on - strand, within HMPREF1058_RS06700at 415.854 kb on + strand, within HMPREF1058_RS06700at 415.929 kb on - strand, within HMPREF1058_RS06700at 415.995 kb on - strand, within HMPREF1058_RS06700at 416.092 kb on + strand, within HMPREF1058_RS06700at 416.165 kb on + strandat 416.165 kb on + strandat 416.166 kb on - strandat 416.166 kb on - strandat 416.167 kb on + strandat 416.168 kb on - strandat 416.169 kb on + strandat 416.194 kb on + strandat 416.194 kb on + strandat 416.195 kb on - strandat 416.196 kb on + strandat 416.196 kb on + strandat 416.196 kb on + strandat 416.197 kb on - strandat 416.197 kb on - strandat 416.199 kb on - strandat 416.203 kb on + strandat 416.204 kb on - strandat 416.204 kb on - strandat 416.204 kb on - strandat 416.216 kb on - strandat 416.219 kb on + strandat 416.220 kb on - strandat 416.338 kb on + strandat 416.422 kb on - strand, within HMPREF1058_RS06695at 416.454 kb on + strand, within HMPREF1058_RS06695at 416.566 kb on + strand, within HMPREF1058_RS06695at 416.588 kb on + strand, within HMPREF1058_RS06695at 416.588 kb on + strand, within HMPREF1058_RS06695at 416.588 kb on + strand, within HMPREF1058_RS06695at 416.589 kb on - strand, within HMPREF1058_RS06695at 416.634 kb on + strand, within HMPREF1058_RS06695at 416.634 kb on + strand, within HMPREF1058_RS06695at 416.634 kb on + strand, within HMPREF1058_RS06695at 416.634 kb on + strand, within HMPREF1058_RS06695at 416.635 kb on - strand, within HMPREF1058_RS06695at 416.635 kb on - strand, within HMPREF1058_RS06695at 416.635 kb on - strand, within HMPREF1058_RS06695at 416.635 kb on - strand, within HMPREF1058_RS06695at 416.635 kb on - strand, within HMPREF1058_RS06695at 416.635 kb on - strand, within HMPREF1058_RS06695at 416.646 kb on - strand, within HMPREF1058_RS06695at 416.650 kb on - strand, within HMPREF1058_RS06695at 416.663 kb on - strand, within HMPREF1058_RS06695at 416.664 kb on + strand, within HMPREF1058_RS06695at 416.665 kb on - strand, within HMPREF1058_RS06695at 416.920 kb on + strand, within HMPREF1058_RS06695at 416.921 kb on - strand, within HMPREF1058_RS06695at 417.152 kb on + strand, within HMPREF1058_RS06695at 417.188 kb on - strand, within HMPREF1058_RS06695at 417.192 kb on + strand, within HMPREF1058_RS06695

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Per-strain Table

Position Strand Gene LocusTag Fraction Galactan from Potato 2.5 mg/ml (C)
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414,125 + HMPREF1058_RS06710 0.57 +0.5
414,176 - HMPREF1058_RS06710 0.64 -0.3
414,177 - HMPREF1058_RS06710 0.64 +2.0
414,259 + HMPREF1058_RS06710 0.74 -0.5
414,333 - HMPREF1058_RS06710 0.83 -0.8
414,333 - HMPREF1058_RS06710 0.83 -1.0
414,334 + HMPREF1058_RS06710 0.83 +1.9
414,334 + HMPREF1058_RS06710 0.83 +1.3
414,334 + HMPREF1058_RS06710 0.83 -1.5
414,338 - HMPREF1058_RS06710 0.83 -0.2
414,349 + HMPREF1058_RS06710 0.85 -1.3
414,354 - HMPREF1058_RS06710 0.85 +1.2
414,450 - +1.5
414,492 + -2.1
414,536 + HMPREF1058_RS06705 0.12 +2.2
414,545 - HMPREF1058_RS06705 0.14 -1.0
414,610 + HMPREF1058_RS06705 0.25 +1.1
414,629 - HMPREF1058_RS06705 0.28 -1.3
414,636 + HMPREF1058_RS06705 0.29 +0.9
414,636 + HMPREF1058_RS06705 0.29 +0.6
414,636 + +0.6
414,636 + HMPREF1058_RS06705 0.29 +1.0
414,637 - HMPREF1058_RS06705 0.29 -1.4
414,637 - HMPREF1058_RS06705 0.29 -1.0
414,715 + HMPREF1058_RS06705 0.42 -0.0
414,730 + HMPREF1058_RS06705 0.44 +0.1
414,924 - HMPREF1058_RS06705 0.76 +0.3
414,954 - HMPREF1058_RS06705 0.81 -0.8
415,051 + -0.8
415,052 - -0.7
415,063 + -0.0
415,064 - -0.1
415,156 - +2.4
415,185 + +0.0
415,185 + +1.4
415,185 + +1.2
415,189 + -2.0
415,189 + +1.0
415,218 + HMPREF1058_RS06700 0.12 +3.1
415,221 - HMPREF1058_RS06700 0.12 +1.7
415,240 + HMPREF1058_RS06700 0.14 +0.3
415,402 + HMPREF1058_RS06700 0.28 -0.9
415,514 - HMPREF1058_RS06700 0.38 +0.4
415,515 + HMPREF1058_RS06700 0.38 -1.3
415,515 + HMPREF1058_RS06700 0.38 +0.3
415,516 - HMPREF1058_RS06700 0.38 -0.3
415,516 - HMPREF1058_RS06700 0.38 +1.8
415,516 - HMPREF1058_RS06700 0.38 +0.8
415,770 - HMPREF1058_RS06700 0.60 +0.9
415,770 - HMPREF1058_RS06700 0.60 -0.4
415,839 - HMPREF1058_RS06700 0.66 -0.4
415,854 + HMPREF1058_RS06700 0.67 +1.1
415,929 - HMPREF1058_RS06700 0.73 -1.6
415,995 - HMPREF1058_RS06700 0.79 +0.6
416,092 + HMPREF1058_RS06700 0.88 -0.8
416,165 + +1.2
416,165 + +0.2
416,166 - -1.6
416,166 - +0.2
416,167 + +1.2
416,168 - -1.4
416,169 + +1.7
416,194 + -0.7
416,194 + +3.1
416,195 - -1.9
416,196 + -0.8
416,196 + -0.1
416,196 + -1.2
416,197 - -0.9
416,197 - -2.3
416,199 - +0.6
416,203 + +0.9
416,204 - -1.1
416,204 - -1.0
416,204 - +0.4
416,216 - -0.3
416,219 + -1.3
416,220 - +0.3
416,338 + +0.9
416,422 - HMPREF1058_RS06695 0.16 +0.7
416,454 + HMPREF1058_RS06695 0.19 -0.3
416,566 + HMPREF1058_RS06695 0.29 -0.1
416,588 + HMPREF1058_RS06695 0.31 -2.4
416,588 + HMPREF1058_RS06695 0.31 +0.5
416,588 + HMPREF1058_RS06695 0.31 -0.0
416,589 - HMPREF1058_RS06695 0.31 -1.6
416,634 + HMPREF1058_RS06695 0.35 +1.0
416,634 + HMPREF1058_RS06695 0.35 +2.6
416,634 + HMPREF1058_RS06695 0.35 +0.5
416,634 + HMPREF1058_RS06695 0.35 -0.6
416,635 - HMPREF1058_RS06695 0.35 +0.4
416,635 - HMPREF1058_RS06695 0.35 +0.0
416,635 - HMPREF1058_RS06695 0.35 -0.7
416,635 - HMPREF1058_RS06695 0.35 -0.2
416,635 - HMPREF1058_RS06695 0.35 +0.7
416,635 - HMPREF1058_RS06695 0.35 +0.0
416,646 - HMPREF1058_RS06695 0.36 -0.7
416,650 - HMPREF1058_RS06695 0.36 -1.5
416,663 - HMPREF1058_RS06695 0.37 +2.4
416,664 + HMPREF1058_RS06695 0.37 -0.1
416,665 - HMPREF1058_RS06695 0.37 -0.9
416,920 + HMPREF1058_RS06695 0.60 +1.2
416,921 - HMPREF1058_RS06695 0.60 +0.2
417,152 + HMPREF1058_RS06695 0.81 -1.5
417,188 - HMPREF1058_RS06695 0.84 +0.8
417,192 + HMPREF1058_RS06695 0.84 -0.3

Or see this region's nucleotide sequence