Experiment: Galactan from Potato 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS06635 and HMPREF1058_RS06630 overlap by 1 nucleotides HMPREF1058_RS06630 and HMPREF1058_RS06625 are separated by 35 nucleotides HMPREF1058_RS06625 and HMPREF1058_RS06620 are separated by 113 nucleotides
HMPREF1058_RS06635: HMPREF1058_RS06635 - dTDP-4-dehydrorhamnose 3,5-epimerase, at 432,536 to 433,105
_RS06635
HMPREF1058_RS06630: HMPREF1058_RS06630 - glucose-1-phosphate thymidylyltransferase RfbA, at 433,105 to 433,992
_RS06630
HMPREF1058_RS06625: HMPREF1058_RS06625 - undecaprenyl-phosphate glucose phosphotransferase, at 434,028 to 435,431
_RS06625
HMPREF1058_RS06620: HMPREF1058_RS06620 - mannose-1-phosphate guanylyltransferase, at 435,545 to 436,609
_RS06620
Position (kb) 434
435
436 Strain fitness (log2 ratio) -2
-1
0
1
2 at 433.139 kb on - strand at 434.030 kb on - strand at 434.117 kb on - strand at 434.255 kb on - strand, within HMPREF1058_RS06625 at 434.265 kb on - strand, within HMPREF1058_RS06625 at 434.448 kb on - strand, within HMPREF1058_RS06625 at 434.517 kb on - strand, within HMPREF1058_RS06625 at 434.529 kb on - strand, within HMPREF1058_RS06625 at 434.550 kb on - strand, within HMPREF1058_RS06625 at 434.569 kb on - strand, within HMPREF1058_RS06625 at 434.706 kb on - strand, within HMPREF1058_RS06625 at 434.710 kb on - strand, within HMPREF1058_RS06625 at 434.820 kb on - strand, within HMPREF1058_RS06625 at 434.882 kb on - strand, within HMPREF1058_RS06625 at 434.930 kb on - strand, within HMPREF1058_RS06625 at 434.967 kb on - strand, within HMPREF1058_RS06625 at 435.073 kb on - strand, within HMPREF1058_RS06625 at 435.157 kb on - strand, within HMPREF1058_RS06625 at 435.157 kb on - strand, within HMPREF1058_RS06625 at 435.157 kb on - strand, within HMPREF1058_RS06625 at 435.226 kb on - strand, within HMPREF1058_RS06625 at 435.257 kb on - strand, within HMPREF1058_RS06625 at 435.281 kb on - strand, within HMPREF1058_RS06625 at 435.396 kb on - strand at 435.400 kb on - strand at 435.463 kb on - strand at 435.470 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Galactan from Potato 2.5 mg/ml (C) remove 433,139 - -1.2 434,030 - -0.7 434,117 - -1.4 434,255 - HMPREF1058_RS06625 0.16 +1.3 434,265 - HMPREF1058_RS06625 0.17 -0.2 434,448 - HMPREF1058_RS06625 0.30 +1.0 434,517 - HMPREF1058_RS06625 0.35 +1.9 434,529 - HMPREF1058_RS06625 0.36 +1.4 434,550 - HMPREF1058_RS06625 0.37 +1.2 434,569 - HMPREF1058_RS06625 0.39 +1.4 434,706 - HMPREF1058_RS06625 0.48 +1.2 434,710 - HMPREF1058_RS06625 0.49 -0.4 434,820 - HMPREF1058_RS06625 0.56 +2.7 434,882 - HMPREF1058_RS06625 0.61 -0.7 434,930 - HMPREF1058_RS06625 0.64 -2.3 434,967 - HMPREF1058_RS06625 0.67 +2.3 435,073 - HMPREF1058_RS06625 0.74 -1.8 435,157 - HMPREF1058_RS06625 0.80 -1.6 435,157 - HMPREF1058_RS06625 0.80 +1.6 435,157 - HMPREF1058_RS06625 0.80 -1.2 435,226 - HMPREF1058_RS06625 0.85 -0.6 435,257 - HMPREF1058_RS06625 0.88 -1.0 435,281 - HMPREF1058_RS06625 0.89 +2.5 435,396 - -1.2 435,400 - -0.2 435,463 - -2.5 435,470 - -2.4
Or see this region's nucleotide sequence