Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS06545

Experiment: Galactan from Potato 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS06555 and HMPREF1058_RS06550 overlap by 8 nucleotidesHMPREF1058_RS06550 and HMPREF1058_RS06545 are separated by 359 nucleotidesHMPREF1058_RS06545 and HMPREF1058_RS06540 are separated by 108 nucleotidesHMPREF1058_RS06540 and HMPREF1058_RS06535 are separated by 55 nucleotidesHMPREF1058_RS06535 and HMPREF1058_RS06530 are separated by 85 nucleotides HMPREF1058_RS06555: HMPREF1058_RS06555 - nucleotidyltransferase domain-containing protein, at 451,721 to 452,014 _RS06555 HMPREF1058_RS06550: HMPREF1058_RS06550 - DUF86 domain-containing protein, at 452,007 to 452,381 _RS06550 HMPREF1058_RS06545: HMPREF1058_RS06545 - transcriptional regulator, at 452,741 to 453,838 _RS06545 HMPREF1058_RS06540: HMPREF1058_RS06540 - hypothetical protein, at 453,947 to 454,168 _RS06540 HMPREF1058_RS06535: HMPREF1058_RS06535 - hypothetical protein, at 454,224 to 454,433 _RS06535 HMPREF1058_RS06530: HMPREF1058_RS06530 - flippase, at 454,519 to 455,991 _RS06530 Position (kb) 452 453 454Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 451.742 kb on - strandat 451.874 kb on - strand, within HMPREF1058_RS06555at 451.874 kb on - strand, within HMPREF1058_RS06555at 451.892 kb on - strand, within HMPREF1058_RS06555at 452.006 kb on + strandat 452.006 kb on + strandat 452.006 kb on + strandat 452.007 kb on - strandat 452.007 kb on - strandat 452.010 kb on + strandat 452.067 kb on + strand, within HMPREF1058_RS06550at 452.074 kb on + strand, within HMPREF1058_RS06550at 452.074 kb on + strand, within HMPREF1058_RS06550at 452.074 kb on + strand, within HMPREF1058_RS06550at 452.075 kb on - strand, within HMPREF1058_RS06550at 452.075 kb on - strand, within HMPREF1058_RS06550at 452.075 kb on - strand, within HMPREF1058_RS06550at 452.173 kb on + strand, within HMPREF1058_RS06550at 452.204 kb on - strand, within HMPREF1058_RS06550at 452.226 kb on + strand, within HMPREF1058_RS06550at 452.226 kb on + strand, within HMPREF1058_RS06550at 452.228 kb on + strand, within HMPREF1058_RS06550at 452.250 kb on - strand, within HMPREF1058_RS06550at 452.250 kb on - strand, within HMPREF1058_RS06550at 452.253 kb on + strand, within HMPREF1058_RS06550at 452.254 kb on - strand, within HMPREF1058_RS06550at 452.254 kb on - strand, within HMPREF1058_RS06550at 452.258 kb on + strand, within HMPREF1058_RS06550at 452.258 kb on + strand, within HMPREF1058_RS06550at 452.288 kb on + strand, within HMPREF1058_RS06550at 452.288 kb on + strand, within HMPREF1058_RS06550at 452.289 kb on - strand, within HMPREF1058_RS06550at 452.306 kb on - strand, within HMPREF1058_RS06550at 452.308 kb on + strand, within HMPREF1058_RS06550at 452.312 kb on + strand, within HMPREF1058_RS06550at 452.312 kb on + strand, within HMPREF1058_RS06550at 452.313 kb on - strand, within HMPREF1058_RS06550at 452.319 kb on - strand, within HMPREF1058_RS06550at 452.335 kb on + strand, within HMPREF1058_RS06550at 452.336 kb on - strand, within HMPREF1058_RS06550at 452.369 kb on + strandat 452.413 kb on + strandat 452.475 kb on + strandat 452.486 kb on + strandat 452.518 kb on + strandat 452.532 kb on - strandat 452.655 kb on - strandat 452.818 kb on + strandat 452.837 kb on + strandat 452.965 kb on + strand, within HMPREF1058_RS06545at 452.967 kb on + strand, within HMPREF1058_RS06545at 453.011 kb on + strand, within HMPREF1058_RS06545at 453.011 kb on + strand, within HMPREF1058_RS06545at 453.012 kb on - strand, within HMPREF1058_RS06545at 453.015 kb on + strand, within HMPREF1058_RS06545at 453.016 kb on - strand, within HMPREF1058_RS06545at 453.188 kb on + strand, within HMPREF1058_RS06545at 453.192 kb on + strand, within HMPREF1058_RS06545at 453.192 kb on + strand, within HMPREF1058_RS06545at 453.193 kb on - strand, within HMPREF1058_RS06545at 453.193 kb on - strand, within HMPREF1058_RS06545at 453.399 kb on + strand, within HMPREF1058_RS06545at 453.399 kb on + strand, within HMPREF1058_RS06545at 453.399 kb on + strand, within HMPREF1058_RS06545at 453.399 kb on + strand, within HMPREF1058_RS06545at 453.399 kb on + strand, within HMPREF1058_RS06545at 453.399 kb on + strand, within HMPREF1058_RS06545at 453.400 kb on - strand, within HMPREF1058_RS06545at 453.400 kb on - strandat 453.400 kb on - strand, within HMPREF1058_RS06545at 453.400 kb on - strand, within HMPREF1058_RS06545at 453.400 kb on - strand, within HMPREF1058_RS06545at 453.400 kb on - strand, within HMPREF1058_RS06545at 453.401 kb on + strand, within HMPREF1058_RS06545at 453.424 kb on + strand, within HMPREF1058_RS06545at 453.424 kb on + strand, within HMPREF1058_RS06545at 453.567 kb on - strand, within HMPREF1058_RS06545at 453.587 kb on + strand, within HMPREF1058_RS06545at 453.587 kb on + strand, within HMPREF1058_RS06545at 453.589 kb on + strand, within HMPREF1058_RS06545at 453.589 kb on + strand, within HMPREF1058_RS06545at 453.590 kb on - strand, within HMPREF1058_RS06545at 453.590 kb on - strand, within HMPREF1058_RS06545at 453.592 kb on + strand, within HMPREF1058_RS06545at 453.592 kb on + strand, within HMPREF1058_RS06545at 453.593 kb on - strand, within HMPREF1058_RS06545at 453.643 kb on + strand, within HMPREF1058_RS06545at 453.722 kb on + strand, within HMPREF1058_RS06545at 453.722 kb on + strand, within HMPREF1058_RS06545at 453.722 kb on + strand, within HMPREF1058_RS06545at 453.723 kb on - strand, within HMPREF1058_RS06545at 453.816 kb on - strandat 453.850 kb on - strandat 453.939 kb on + strandat 454.052 kb on + strand, within HMPREF1058_RS06540at 454.053 kb on - strand, within HMPREF1058_RS06540at 454.053 kb on - strand, within HMPREF1058_RS06540at 454.085 kb on - strand, within HMPREF1058_RS06540at 454.157 kb on + strandat 454.158 kb on - strandat 454.159 kb on + strandat 454.171 kb on + strandat 454.171 kb on + strandat 454.171 kb on + strandat 454.172 kb on - strandat 454.200 kb on + strandat 454.257 kb on - strand, within HMPREF1058_RS06535at 454.262 kb on - strand, within HMPREF1058_RS06535at 454.262 kb on - strand, within HMPREF1058_RS06535at 454.292 kb on - strand, within HMPREF1058_RS06535at 454.294 kb on + strand, within HMPREF1058_RS06535at 454.294 kb on + strand, within HMPREF1058_RS06535at 454.295 kb on - strand, within HMPREF1058_RS06535at 454.316 kb on + strand, within HMPREF1058_RS06535at 454.393 kb on + strand, within HMPREF1058_RS06535at 454.393 kb on + strand, within HMPREF1058_RS06535at 454.393 kb on + strand, within HMPREF1058_RS06535at 454.394 kb on - strandat 454.394 kb on - strand, within HMPREF1058_RS06535at 454.423 kb on + strandat 454.501 kb on - strandat 454.507 kb on + strandat 454.507 kb on + strandat 454.509 kb on + strandat 454.510 kb on - strandat 454.511 kb on + strandat 454.511 kb on + strandat 454.512 kb on - strandat 454.533 kb on - strandat 454.544 kb on - strandat 454.706 kb on - strand, within HMPREF1058_RS06530at 454.706 kb on - strand, within HMPREF1058_RS06530at 454.706 kb on - strand, within HMPREF1058_RS06530at 454.706 kb on - strand, within HMPREF1058_RS06530at 454.706 kb on - strand, within HMPREF1058_RS06530at 454.706 kb on - strand, within HMPREF1058_RS06530at 454.712 kb on + strand, within HMPREF1058_RS06530at 454.782 kb on - strand, within HMPREF1058_RS06530at 454.795 kb on - strand, within HMPREF1058_RS06530at 454.810 kb on - strand, within HMPREF1058_RS06530

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Per-strain Table

Position Strand Gene LocusTag Fraction Galactan from Potato 2.5 mg/ml (C)
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451,742 - -0.4
451,874 - HMPREF1058_RS06555 0.52 -2.5
451,874 - HMPREF1058_RS06555 0.52 -0.4
451,892 - HMPREF1058_RS06555 0.58 -1.6
452,006 + +0.1
452,006 + -1.4
452,006 + +0.1
452,007 - -0.4
452,007 - -1.1
452,010 + -1.6
452,067 + HMPREF1058_RS06550 0.16 +1.0
452,074 + HMPREF1058_RS06550 0.18 -0.7
452,074 + HMPREF1058_RS06550 0.18 +0.0
452,074 + HMPREF1058_RS06550 0.18 +1.0
452,075 - HMPREF1058_RS06550 0.18 -0.2
452,075 - HMPREF1058_RS06550 0.18 -1.9
452,075 - HMPREF1058_RS06550 0.18 -1.9
452,173 + HMPREF1058_RS06550 0.44 +1.0
452,204 - HMPREF1058_RS06550 0.53 -0.6
452,226 + HMPREF1058_RS06550 0.58 +0.2
452,226 + HMPREF1058_RS06550 0.58 +0.2
452,228 + HMPREF1058_RS06550 0.59 -1.8
452,250 - HMPREF1058_RS06550 0.65 -1.1
452,250 - HMPREF1058_RS06550 0.65 -3.6
452,253 + HMPREF1058_RS06550 0.66 +0.6
452,254 - HMPREF1058_RS06550 0.66 -2.3
452,254 - HMPREF1058_RS06550 0.66 +0.7
452,258 + HMPREF1058_RS06550 0.67 -0.2
452,258 + HMPREF1058_RS06550 0.67 -1.5
452,288 + HMPREF1058_RS06550 0.75 -0.2
452,288 + HMPREF1058_RS06550 0.75 -0.4
452,289 - HMPREF1058_RS06550 0.75 -1.6
452,306 - HMPREF1058_RS06550 0.80 -1.1
452,308 + HMPREF1058_RS06550 0.80 +0.6
452,312 + HMPREF1058_RS06550 0.81 +0.6
452,312 + HMPREF1058_RS06550 0.81 -0.7
452,313 - HMPREF1058_RS06550 0.82 +0.3
452,319 - HMPREF1058_RS06550 0.83 +1.3
452,335 + HMPREF1058_RS06550 0.87 +0.5
452,336 - HMPREF1058_RS06550 0.88 -2.9
452,369 + -1.0
452,413 + -1.0
452,475 + +3.1
452,486 + +0.8
452,518 + -0.9
452,532 - -1.1
452,655 - +0.8
452,818 + +0.5
452,837 + +0.4
452,965 + HMPREF1058_RS06545 0.20 +0.9
452,967 + HMPREF1058_RS06545 0.21 -0.3
453,011 + HMPREF1058_RS06545 0.25 +2.4
453,011 + HMPREF1058_RS06545 0.25 +0.9
453,012 - HMPREF1058_RS06545 0.25 +0.7
453,015 + HMPREF1058_RS06545 0.25 -1.9
453,016 - HMPREF1058_RS06545 0.25 +2.2
453,188 + HMPREF1058_RS06545 0.41 -0.4
453,192 + HMPREF1058_RS06545 0.41 +1.9
453,192 + HMPREF1058_RS06545 0.41 -0.0
453,193 - HMPREF1058_RS06545 0.41 +0.6
453,193 - HMPREF1058_RS06545 0.41 +1.0
453,399 + HMPREF1058_RS06545 0.60 +0.1
453,399 + HMPREF1058_RS06545 0.60 -0.1
453,399 + HMPREF1058_RS06545 0.60 +1.5
453,399 + HMPREF1058_RS06545 0.60 +3.0
453,399 + HMPREF1058_RS06545 0.60 +0.7
453,399 + HMPREF1058_RS06545 0.60 +0.2
453,400 - HMPREF1058_RS06545 0.60 -1.6
453,400 - +1.3
453,400 - HMPREF1058_RS06545 0.60 +0.2
453,400 - HMPREF1058_RS06545 0.60 -1.7
453,400 - HMPREF1058_RS06545 0.60 +0.2
453,400 - HMPREF1058_RS06545 0.60 +2.6
453,401 + HMPREF1058_RS06545 0.60 +0.6
453,424 + HMPREF1058_RS06545 0.62 +2.1
453,424 + HMPREF1058_RS06545 0.62 +0.1
453,567 - HMPREF1058_RS06545 0.75 +1.5
453,587 + HMPREF1058_RS06545 0.77 -1.8
453,587 + HMPREF1058_RS06545 0.77 +0.1
453,589 + HMPREF1058_RS06545 0.77 +0.6
453,589 + HMPREF1058_RS06545 0.77 -0.6
453,590 - HMPREF1058_RS06545 0.77 -2.0
453,590 - HMPREF1058_RS06545 0.77 +2.4
453,592 + HMPREF1058_RS06545 0.78 +1.2
453,592 + HMPREF1058_RS06545 0.78 +1.4
453,593 - HMPREF1058_RS06545 0.78 +0.0
453,643 + HMPREF1058_RS06545 0.82 +2.6
453,722 + HMPREF1058_RS06545 0.89 +1.0
453,722 + HMPREF1058_RS06545 0.89 -0.4
453,722 + HMPREF1058_RS06545 0.89 +0.2
453,723 - HMPREF1058_RS06545 0.89 +0.5
453,816 - +2.6
453,850 - +2.7
453,939 + +2.3
454,052 + HMPREF1058_RS06540 0.47 -1.3
454,053 - HMPREF1058_RS06540 0.48 -0.2
454,053 - HMPREF1058_RS06540 0.48 -0.6
454,085 - HMPREF1058_RS06540 0.62 +1.3
454,157 + -1.2
454,158 - +1.1
454,159 + +0.6
454,171 + -1.4
454,171 + -0.6
454,171 + +0.3
454,172 - -0.4
454,200 + +0.6
454,257 - HMPREF1058_RS06535 0.16 +1.8
454,262 - HMPREF1058_RS06535 0.18 -1.0
454,262 - HMPREF1058_RS06535 0.18 +3.5
454,292 - HMPREF1058_RS06535 0.32 -0.1
454,294 + HMPREF1058_RS06535 0.33 +0.6
454,294 + HMPREF1058_RS06535 0.33 -0.7
454,295 - HMPREF1058_RS06535 0.34 +1.1
454,316 + HMPREF1058_RS06535 0.44 -0.0
454,393 + HMPREF1058_RS06535 0.80 -0.6
454,393 + HMPREF1058_RS06535 0.80 -2.7
454,393 + HMPREF1058_RS06535 0.80 +0.2
454,394 - -0.2
454,394 - HMPREF1058_RS06535 0.81 +0.6
454,423 + +0.1
454,501 - +2.6
454,507 + +1.3
454,507 + -0.8
454,509 + +1.1
454,510 - -0.7
454,511 + -0.2
454,511 + +1.2
454,512 - +1.0
454,533 - +2.2
454,544 - -0.3
454,706 - HMPREF1058_RS06530 0.13 +0.9
454,706 - HMPREF1058_RS06530 0.13 +1.7
454,706 - HMPREF1058_RS06530 0.13 +1.8
454,706 - HMPREF1058_RS06530 0.13 -1.1
454,706 - HMPREF1058_RS06530 0.13 -0.8
454,706 - HMPREF1058_RS06530 0.13 +0.2
454,712 + HMPREF1058_RS06530 0.13 -0.9
454,782 - HMPREF1058_RS06530 0.18 +0.2
454,795 - HMPREF1058_RS06530 0.19 -1.4
454,810 - HMPREF1058_RS06530 0.20 -0.4

Or see this region's nucleotide sequence