Experiment: Galactan from Potato 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS06525 and HMPREF1058_RS0119790 overlap by 13 nucleotides HMPREF1058_RS0119790 and HMPREF1058_RS06520 are separated by 13 nucleotides HMPREF1058_RS06520 and HMPREF1058_RS06515 are separated by 29 nucleotides
HMPREF1058_RS06525: HMPREF1058_RS06525 - hypothetical protein, at 457,384 to 458,661
_RS06525
HMPREF1058_RS0119790: HMPREF1058_RS0119790 - glycosyltransferase, at 458,649 to 459,371
_RS0119790
HMPREF1058_RS06520: HMPREF1058_RS06520 - capsular polysaccharide synthesis protein, at 459,385 to 460,344
_RS06520
HMPREF1058_RS06515: HMPREF1058_RS06515 - aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme, at 460,374 to 462,185
_RS06515
Position (kb) 459
460
461 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 458.388 kb on + strand, within HMPREF1058_RS06525 at 458.389 kb on - strand at 458.389 kb on - strand, within HMPREF1058_RS06525 at 458.389 kb on - strand, within HMPREF1058_RS06525 at 458.389 kb on - strand, within HMPREF1058_RS06525 at 458.430 kb on + strand, within HMPREF1058_RS06525 at 458.430 kb on + strand, within HMPREF1058_RS06525 at 458.431 kb on - strand, within HMPREF1058_RS06525 at 458.432 kb on + strand, within HMPREF1058_RS06525 at 458.433 kb on - strand, within HMPREF1058_RS06525 at 458.448 kb on + strand, within HMPREF1058_RS06525 at 458.460 kb on - strand, within HMPREF1058_RS06525 at 458.463 kb on + strand, within HMPREF1058_RS06525 at 458.464 kb on - strand, within HMPREF1058_RS06525 at 458.464 kb on - strand, within HMPREF1058_RS06525 at 458.491 kb on + strand, within HMPREF1058_RS06525 at 458.493 kb on + strand, within HMPREF1058_RS06525 at 458.493 kb on + strand, within HMPREF1058_RS06525 at 458.557 kb on - strand at 458.581 kb on - strand at 458.613 kb on + strand at 458.621 kb on - strand at 458.648 kb on + strand at 458.668 kb on + strand at 458.681 kb on + strand at 458.734 kb on - strand, within HMPREF1058_RS0119790 at 458.734 kb on - strand, within HMPREF1058_RS0119790 at 458.750 kb on + strand, within HMPREF1058_RS0119790 at 458.777 kb on + strand, within HMPREF1058_RS0119790 at 458.786 kb on - strand, within HMPREF1058_RS0119790 at 458.786 kb on - strand, within HMPREF1058_RS0119790 at 458.795 kb on - strand, within HMPREF1058_RS0119790 at 458.911 kb on + strand, within HMPREF1058_RS0119790 at 458.912 kb on - strand, within HMPREF1058_RS0119790 at 458.996 kb on - strand, within HMPREF1058_RS0119790 at 459.036 kb on - strand, within HMPREF1058_RS0119790 at 459.036 kb on - strand, within HMPREF1058_RS0119790 at 459.047 kb on - strand, within HMPREF1058_RS0119790 at 459.088 kb on + strand, within HMPREF1058_RS0119790 at 459.124 kb on + strand, within HMPREF1058_RS0119790 at 459.125 kb on - strand, within HMPREF1058_RS0119790 at 459.164 kb on + strand, within HMPREF1058_RS0119790 at 459.165 kb on - strand, within HMPREF1058_RS0119790 at 459.170 kb on + strand, within HMPREF1058_RS0119790 at 459.171 kb on - strand, within HMPREF1058_RS0119790 at 459.171 kb on - strand, within HMPREF1058_RS0119790 at 459.192 kb on - strand, within HMPREF1058_RS0119790 at 459.282 kb on - strand, within HMPREF1058_RS0119790 at 459.326 kb on + strand at 459.326 kb on + strand at 459.327 kb on - strand at 459.327 kb on - strand at 459.327 kb on - strand at 459.328 kb on + strand at 459.328 kb on + strand at 459.328 kb on + strand at 459.329 kb on - strand at 459.329 kb on - strand at 459.329 kb on - strand at 459.331 kb on - strand at 459.331 kb on - strand at 459.331 kb on - strand at 459.338 kb on - strand at 459.338 kb on - strand at 459.364 kb on + strand at 459.365 kb on - strand at 459.370 kb on - strand at 459.381 kb on + strand at 459.381 kb on + strand at 459.382 kb on - strand at 459.429 kb on + strand at 459.680 kb on + strand, within HMPREF1058_RS06520 at 459.681 kb on - strand, within HMPREF1058_RS06520 at 459.750 kb on + strand, within HMPREF1058_RS06520 at 459.763 kb on + strand, within HMPREF1058_RS06520 at 459.768 kb on - strand, within HMPREF1058_RS06520 at 459.781 kb on + strand, within HMPREF1058_RS06520 at 459.782 kb on - strand, within HMPREF1058_RS06520 at 459.782 kb on - strand, within HMPREF1058_RS06520 at 459.783 kb on + strand at 459.783 kb on + strand, within HMPREF1058_RS06520 at 459.784 kb on - strand, within HMPREF1058_RS06520 at 459.802 kb on - strand, within HMPREF1058_RS06520 at 459.802 kb on - strand, within HMPREF1058_RS06520 at 459.819 kb on + strand, within HMPREF1058_RS06520 at 459.837 kb on - strand, within HMPREF1058_RS06520 at 459.863 kb on - strand, within HMPREF1058_RS06520 at 459.873 kb on - strand, within HMPREF1058_RS06520 at 459.873 kb on - strand, within HMPREF1058_RS06520 at 459.906 kb on + strand, within HMPREF1058_RS06520 at 459.907 kb on - strand, within HMPREF1058_RS06520 at 459.916 kb on - strand, within HMPREF1058_RS06520 at 460.005 kb on - strand, within HMPREF1058_RS06520 at 460.054 kb on + strand, within HMPREF1058_RS06520 at 460.263 kb on - strand at 460.263 kb on - strand at 460.288 kb on - strand at 460.319 kb on + strand at 460.335 kb on - strand at 460.370 kb on - strand at 460.371 kb on + strand at 460.373 kb on + strand at 460.439 kb on + strand at 460.439 kb on + strand at 460.464 kb on - strand at 460.472 kb on + strand at 460.479 kb on - strand at 460.523 kb on + strand at 460.525 kb on + strand at 460.525 kb on + strand at 460.531 kb on + strand at 460.560 kb on + strand, within HMPREF1058_RS06515 at 460.560 kb on + strand, within HMPREF1058_RS06515 at 460.560 kb on + strand, within HMPREF1058_RS06515 at 460.560 kb on + strand, within HMPREF1058_RS06515 at 460.562 kb on + strand, within HMPREF1058_RS06515 at 460.564 kb on + strand, within HMPREF1058_RS06515 at 460.565 kb on - strand, within HMPREF1058_RS06515 at 460.583 kb on + strand, within HMPREF1058_RS06515 at 460.595 kb on - strand, within HMPREF1058_RS06515 at 460.595 kb on - strand, within HMPREF1058_RS06515 at 460.601 kb on + strand, within HMPREF1058_RS06515 at 460.605 kb on - strand, within HMPREF1058_RS06515 at 460.617 kb on + strand, within HMPREF1058_RS06515 at 460.634 kb on + strand, within HMPREF1058_RS06515 at 460.638 kb on + strand, within HMPREF1058_RS06515 at 460.652 kb on - strand, within HMPREF1058_RS06515 at 460.652 kb on - strand, within HMPREF1058_RS06515 at 460.667 kb on - strand, within HMPREF1058_RS06515 at 460.793 kb on + strand, within HMPREF1058_RS06515 at 460.820 kb on + strand, within HMPREF1058_RS06515 at 460.820 kb on + strand, within HMPREF1058_RS06515 at 460.821 kb on - strand, within HMPREF1058_RS06515 at 460.826 kb on - strand, within HMPREF1058_RS06515 at 460.875 kb on + strand, within HMPREF1058_RS06515 at 460.875 kb on + strand, within HMPREF1058_RS06515 at 460.879 kb on - strand at 460.879 kb on - strand, within HMPREF1058_RS06515 at 460.880 kb on + strand, within HMPREF1058_RS06515 at 460.892 kb on + strand, within HMPREF1058_RS06515 at 460.896 kb on + strand, within HMPREF1058_RS06515 at 460.929 kb on + strand, within HMPREF1058_RS06515 at 460.929 kb on + strand, within HMPREF1058_RS06515 at 460.933 kb on + strand, within HMPREF1058_RS06515 at 460.970 kb on + strand, within HMPREF1058_RS06515 at 461.046 kb on - strand, within HMPREF1058_RS06515 at 461.058 kb on + strand, within HMPREF1058_RS06515 at 461.065 kb on + strand, within HMPREF1058_RS06515 at 461.097 kb on - strand, within HMPREF1058_RS06515 at 461.099 kb on + strand, within HMPREF1058_RS06515 at 461.101 kb on + strand, within HMPREF1058_RS06515 at 461.111 kb on + strand, within HMPREF1058_RS06515 at 461.112 kb on - strand, within HMPREF1058_RS06515 at 461.118 kb on - strand, within HMPREF1058_RS06515 at 461.120 kb on - strand, within HMPREF1058_RS06515 at 461.139 kb on - strand, within HMPREF1058_RS06515 at 461.188 kb on - strand, within HMPREF1058_RS06515 at 461.240 kb on + strand, within HMPREF1058_RS06515 at 461.329 kb on - strand, within HMPREF1058_RS06515 at 461.329 kb on - strand, within HMPREF1058_RS06515
Per-strain Table
Position Strand Gene LocusTag Fraction Galactan from Potato 2.5 mg/ml (C) remove 458,388 + HMPREF1058_RS06525 0.79 +1.6 458,389 - -0.4 458,389 - HMPREF1058_RS06525 0.79 -0.3 458,389 - HMPREF1058_RS06525 0.79 -0.6 458,389 - HMPREF1058_RS06525 0.79 +1.1 458,430 + HMPREF1058_RS06525 0.82 +0.0 458,430 + HMPREF1058_RS06525 0.82 -2.2 458,431 - HMPREF1058_RS06525 0.82 +1.4 458,432 + HMPREF1058_RS06525 0.82 +0.2 458,433 - HMPREF1058_RS06525 0.82 -0.8 458,448 + HMPREF1058_RS06525 0.83 -1.4 458,460 - HMPREF1058_RS06525 0.84 +1.5 458,463 + HMPREF1058_RS06525 0.84 -0.4 458,464 - HMPREF1058_RS06525 0.85 +2.0 458,464 - HMPREF1058_RS06525 0.85 -0.1 458,491 + HMPREF1058_RS06525 0.87 -0.6 458,493 + HMPREF1058_RS06525 0.87 -1.8 458,493 + HMPREF1058_RS06525 0.87 -0.9 458,557 - -1.4 458,581 - -0.6 458,613 + -1.3 458,621 - +1.7 458,648 + -0.5 458,668 + -0.8 458,681 + -1.4 458,734 - HMPREF1058_RS0119790 0.12 +1.6 458,734 - HMPREF1058_RS0119790 0.12 -1.3 458,750 + HMPREF1058_RS0119790 0.14 -2.3 458,777 + HMPREF1058_RS0119790 0.18 +0.3 458,786 - HMPREF1058_RS0119790 0.19 +0.2 458,786 - HMPREF1058_RS0119790 0.19 +0.4 458,795 - HMPREF1058_RS0119790 0.20 +0.5 458,911 + HMPREF1058_RS0119790 0.36 +0.4 458,912 - HMPREF1058_RS0119790 0.36 +0.7 458,996 - HMPREF1058_RS0119790 0.48 +1.6 459,036 - HMPREF1058_RS0119790 0.54 +0.7 459,036 - HMPREF1058_RS0119790 0.54 +0.3 459,047 - HMPREF1058_RS0119790 0.55 -0.6 459,088 + HMPREF1058_RS0119790 0.61 +0.8 459,124 + HMPREF1058_RS0119790 0.66 -1.2 459,125 - HMPREF1058_RS0119790 0.66 -0.6 459,164 + HMPREF1058_RS0119790 0.71 +0.0 459,165 - HMPREF1058_RS0119790 0.71 -0.2 459,170 + HMPREF1058_RS0119790 0.72 -1.0 459,171 - HMPREF1058_RS0119790 0.72 -1.3 459,171 - HMPREF1058_RS0119790 0.72 -0.7 459,192 - HMPREF1058_RS0119790 0.75 +0.6 459,282 - HMPREF1058_RS0119790 0.88 -0.4 459,326 + +2.5 459,326 + +1.8 459,327 - -1.0 459,327 - +0.6 459,327 - +2.3 459,328 + +1.9 459,328 + -1.0 459,328 + -0.6 459,329 - +1.0 459,329 - +1.4 459,329 - +1.6 459,331 - +1.5 459,331 - +1.3 459,331 - +1.4 459,338 - +0.1 459,338 - +1.9 459,364 + -0.4 459,365 - +0.9 459,370 - +2.1 459,381 + +0.8 459,381 + +0.4 459,382 - +0.8 459,429 + +0.3 459,680 + HMPREF1058_RS06520 0.31 -0.2 459,681 - HMPREF1058_RS06520 0.31 +0.1 459,750 + HMPREF1058_RS06520 0.38 -0.2 459,763 + HMPREF1058_RS06520 0.39 +2.6 459,768 - HMPREF1058_RS06520 0.40 +1.1 459,781 + HMPREF1058_RS06520 0.41 +0.4 459,782 - HMPREF1058_RS06520 0.41 +2.6 459,782 - HMPREF1058_RS06520 0.41 +2.4 459,783 + +1.8 459,783 + HMPREF1058_RS06520 0.41 +0.9 459,784 - HMPREF1058_RS06520 0.42 -0.5 459,802 - HMPREF1058_RS06520 0.43 +0.4 459,802 - HMPREF1058_RS06520 0.43 +1.1 459,819 + HMPREF1058_RS06520 0.45 -1.5 459,837 - HMPREF1058_RS06520 0.47 -0.4 459,863 - HMPREF1058_RS06520 0.50 -0.8 459,873 - HMPREF1058_RS06520 0.51 +1.4 459,873 - HMPREF1058_RS06520 0.51 +1.6 459,906 + HMPREF1058_RS06520 0.54 -1.2 459,907 - HMPREF1058_RS06520 0.54 +1.3 459,916 - HMPREF1058_RS06520 0.55 +1.8 460,005 - HMPREF1058_RS06520 0.65 +1.6 460,054 + HMPREF1058_RS06520 0.70 +1.2 460,263 - -0.2 460,263 - +2.0 460,288 - +0.4 460,319 + +1.4 460,335 - -1.1 460,370 - +1.2 460,371 + +0.4 460,373 + +0.2 460,439 + +0.5 460,439 + +1.2 460,464 - +0.3 460,472 + +2.9 460,479 - +1.4 460,523 + +0.9 460,525 + +0.5 460,525 + +1.0 460,531 + +2.2 460,560 + HMPREF1058_RS06515 0.10 -0.9 460,560 + HMPREF1058_RS06515 0.10 -1.2 460,560 + HMPREF1058_RS06515 0.10 +0.2 460,560 + HMPREF1058_RS06515 0.10 +1.8 460,562 + HMPREF1058_RS06515 0.10 +2.0 460,564 + HMPREF1058_RS06515 0.10 +1.2 460,565 - HMPREF1058_RS06515 0.11 +0.0 460,583 + HMPREF1058_RS06515 0.12 +0.0 460,595 - HMPREF1058_RS06515 0.12 -0.4 460,595 - HMPREF1058_RS06515 0.12 -0.8 460,601 + HMPREF1058_RS06515 0.13 -0.0 460,605 - HMPREF1058_RS06515 0.13 +0.1 460,617 + HMPREF1058_RS06515 0.13 +2.7 460,634 + HMPREF1058_RS06515 0.14 +0.4 460,638 + HMPREF1058_RS06515 0.15 -0.1 460,652 - HMPREF1058_RS06515 0.15 -0.1 460,652 - HMPREF1058_RS06515 0.15 +0.4 460,667 - HMPREF1058_RS06515 0.16 +1.8 460,793 + HMPREF1058_RS06515 0.23 -0.1 460,820 + HMPREF1058_RS06515 0.25 +2.0 460,820 + HMPREF1058_RS06515 0.25 +0.8 460,821 - HMPREF1058_RS06515 0.25 -0.8 460,826 - HMPREF1058_RS06515 0.25 -0.4 460,875 + HMPREF1058_RS06515 0.28 +2.3 460,875 + HMPREF1058_RS06515 0.28 +0.5 460,879 - +1.0 460,879 - HMPREF1058_RS06515 0.28 -0.7 460,880 + HMPREF1058_RS06515 0.28 +0.5 460,892 + HMPREF1058_RS06515 0.29 +0.3 460,896 + HMPREF1058_RS06515 0.29 +1.5 460,929 + HMPREF1058_RS06515 0.31 -0.3 460,929 + HMPREF1058_RS06515 0.31 +1.5 460,933 + HMPREF1058_RS06515 0.31 +1.0 460,970 + HMPREF1058_RS06515 0.33 +2.9 461,046 - HMPREF1058_RS06515 0.37 +0.3 461,058 + HMPREF1058_RS06515 0.38 +0.1 461,065 + HMPREF1058_RS06515 0.38 +1.2 461,097 - HMPREF1058_RS06515 0.40 +2.3 461,099 + HMPREF1058_RS06515 0.40 +0.8 461,101 + HMPREF1058_RS06515 0.40 +1.8 461,111 + HMPREF1058_RS06515 0.41 +0.7 461,112 - HMPREF1058_RS06515 0.41 +1.7 461,118 - HMPREF1058_RS06515 0.41 +0.2 461,120 - HMPREF1058_RS06515 0.41 +0.6 461,139 - HMPREF1058_RS06515 0.42 +1.9 461,188 - HMPREF1058_RS06515 0.45 +1.6 461,240 + HMPREF1058_RS06515 0.48 +0.0 461,329 - HMPREF1058_RS06515 0.53 +1.7 461,329 - HMPREF1058_RS06515 0.53 -1.3
Or see this region's nucleotide sequence