Experiment: Galactan from Potato 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS06520 and HMPREF1058_RS06515 are separated by 29 nucleotides HMPREF1058_RS06515 and HMPREF1058_RS06510 are separated by 2 nucleotides HMPREF1058_RS06510 and HMPREF1058_RS06505 are separated by 12 nucleotides
HMPREF1058_RS06520: HMPREF1058_RS06520 - capsular polysaccharide synthesis protein, at 459,385 to 460,344
_RS06520
HMPREF1058_RS06515: HMPREF1058_RS06515 - aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme, at 460,374 to 462,185
_RS06515
HMPREF1058_RS06510: HMPREF1058_RS06510 - ornithine cyclodeaminase, at 462,188 to 463,150
_RS06510
HMPREF1058_RS06505: HMPREF1058_RS06505 - LicD family protein, at 463,163 to 463,990
_RS06505
Position (kb) 460
461
462
463 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 459.381 kb on + strand at 459.381 kb on + strand at 459.382 kb on - strand at 459.429 kb on + strand at 459.680 kb on + strand, within HMPREF1058_RS06520 at 459.681 kb on - strand, within HMPREF1058_RS06520 at 459.750 kb on + strand, within HMPREF1058_RS06520 at 459.763 kb on + strand, within HMPREF1058_RS06520 at 459.768 kb on - strand, within HMPREF1058_RS06520 at 459.781 kb on + strand, within HMPREF1058_RS06520 at 459.782 kb on - strand, within HMPREF1058_RS06520 at 459.782 kb on - strand, within HMPREF1058_RS06520 at 459.783 kb on + strand at 459.783 kb on + strand, within HMPREF1058_RS06520 at 459.784 kb on - strand, within HMPREF1058_RS06520 at 459.802 kb on - strand, within HMPREF1058_RS06520 at 459.802 kb on - strand, within HMPREF1058_RS06520 at 459.819 kb on + strand, within HMPREF1058_RS06520 at 459.837 kb on - strand, within HMPREF1058_RS06520 at 459.863 kb on - strand, within HMPREF1058_RS06520 at 459.873 kb on - strand, within HMPREF1058_RS06520 at 459.873 kb on - strand, within HMPREF1058_RS06520 at 459.906 kb on + strand, within HMPREF1058_RS06520 at 459.907 kb on - strand, within HMPREF1058_RS06520 at 459.916 kb on - strand, within HMPREF1058_RS06520 at 460.005 kb on - strand, within HMPREF1058_RS06520 at 460.054 kb on + strand, within HMPREF1058_RS06520 at 460.263 kb on - strand at 460.263 kb on - strand at 460.288 kb on - strand at 460.319 kb on + strand at 460.335 kb on - strand at 460.370 kb on - strand at 460.371 kb on + strand at 460.373 kb on + strand at 460.439 kb on + strand at 460.439 kb on + strand at 460.464 kb on - strand at 460.472 kb on + strand at 460.479 kb on - strand at 460.523 kb on + strand at 460.525 kb on + strand at 460.525 kb on + strand at 460.531 kb on + strand at 460.560 kb on + strand, within HMPREF1058_RS06515 at 460.560 kb on + strand, within HMPREF1058_RS06515 at 460.560 kb on + strand, within HMPREF1058_RS06515 at 460.560 kb on + strand, within HMPREF1058_RS06515 at 460.562 kb on + strand, within HMPREF1058_RS06515 at 460.564 kb on + strand, within HMPREF1058_RS06515 at 460.565 kb on - strand, within HMPREF1058_RS06515 at 460.583 kb on + strand, within HMPREF1058_RS06515 at 460.595 kb on - strand, within HMPREF1058_RS06515 at 460.595 kb on - strand, within HMPREF1058_RS06515 at 460.601 kb on + strand, within HMPREF1058_RS06515 at 460.605 kb on - strand, within HMPREF1058_RS06515 at 460.617 kb on + strand, within HMPREF1058_RS06515 at 460.634 kb on + strand, within HMPREF1058_RS06515 at 460.638 kb on + strand, within HMPREF1058_RS06515 at 460.652 kb on - strand, within HMPREF1058_RS06515 at 460.652 kb on - strand, within HMPREF1058_RS06515 at 460.667 kb on - strand, within HMPREF1058_RS06515 at 460.793 kb on + strand, within HMPREF1058_RS06515 at 460.820 kb on + strand, within HMPREF1058_RS06515 at 460.820 kb on + strand, within HMPREF1058_RS06515 at 460.821 kb on - strand, within HMPREF1058_RS06515 at 460.826 kb on - strand, within HMPREF1058_RS06515 at 460.875 kb on + strand, within HMPREF1058_RS06515 at 460.875 kb on + strand, within HMPREF1058_RS06515 at 460.879 kb on - strand at 460.879 kb on - strand, within HMPREF1058_RS06515 at 460.880 kb on + strand, within HMPREF1058_RS06515 at 460.892 kb on + strand, within HMPREF1058_RS06515 at 460.896 kb on + strand, within HMPREF1058_RS06515 at 460.929 kb on + strand, within HMPREF1058_RS06515 at 460.929 kb on + strand, within HMPREF1058_RS06515 at 460.933 kb on + strand, within HMPREF1058_RS06515 at 460.970 kb on + strand, within HMPREF1058_RS06515 at 461.046 kb on - strand, within HMPREF1058_RS06515 at 461.058 kb on + strand, within HMPREF1058_RS06515 at 461.065 kb on + strand, within HMPREF1058_RS06515 at 461.097 kb on - strand, within HMPREF1058_RS06515 at 461.099 kb on + strand, within HMPREF1058_RS06515 at 461.101 kb on + strand, within HMPREF1058_RS06515 at 461.111 kb on + strand, within HMPREF1058_RS06515 at 461.112 kb on - strand, within HMPREF1058_RS06515 at 461.118 kb on - strand, within HMPREF1058_RS06515 at 461.120 kb on - strand, within HMPREF1058_RS06515 at 461.139 kb on - strand, within HMPREF1058_RS06515 at 461.188 kb on - strand, within HMPREF1058_RS06515 at 461.240 kb on + strand, within HMPREF1058_RS06515 at 461.329 kb on - strand, within HMPREF1058_RS06515 at 461.329 kb on - strand, within HMPREF1058_RS06515 at 461.407 kb on + strand, within HMPREF1058_RS06515 at 461.407 kb on + strand, within HMPREF1058_RS06515 at 461.408 kb on - strand, within HMPREF1058_RS06515 at 461.408 kb on - strand, within HMPREF1058_RS06515 at 461.408 kb on - strand, within HMPREF1058_RS06515 at 461.409 kb on + strand, within HMPREF1058_RS06515 at 461.415 kb on - strand, within HMPREF1058_RS06515 at 461.432 kb on + strand, within HMPREF1058_RS06515 at 461.433 kb on - strand, within HMPREF1058_RS06515 at 461.433 kb on - strand, within HMPREF1058_RS06515 at 461.624 kb on - strand, within HMPREF1058_RS06515 at 461.631 kb on - strand, within HMPREF1058_RS06515 at 461.667 kb on - strand, within HMPREF1058_RS06515 at 461.687 kb on + strand, within HMPREF1058_RS06515 at 461.705 kb on + strand, within HMPREF1058_RS06515 at 461.708 kb on - strand, within HMPREF1058_RS06515 at 461.708 kb on - strand, within HMPREF1058_RS06515 at 461.885 kb on + strand, within HMPREF1058_RS06515 at 461.902 kb on - strand, within HMPREF1058_RS06515 at 461.903 kb on + strand, within HMPREF1058_RS06515 at 461.963 kb on + strand, within HMPREF1058_RS06515 at 461.970 kb on + strand, within HMPREF1058_RS06515 at 462.000 kb on + strand, within HMPREF1058_RS06515 at 462.016 kb on + strand at 462.024 kb on - strand at 462.027 kb on + strand at 462.030 kb on - strand at 462.030 kb on - strand at 462.074 kb on - strand at 462.074 kb on - strand at 462.077 kb on + strand at 462.081 kb on - strand at 462.113 kb on + strand at 462.114 kb on - strand at 462.114 kb on - strand at 462.118 kb on + strand at 462.121 kb on + strand at 462.127 kb on + strand at 462.128 kb on - strand at 462.149 kb on + strand at 462.168 kb on - strand at 462.170 kb on - strand at 462.172 kb on + strand at 462.172 kb on + strand at 462.172 kb on + strand at 462.172 kb on + strand at 462.223 kb on + strand at 462.223 kb on + strand at 462.223 kb on + strand at 462.225 kb on + strand at 462.225 kb on + strand at 462.225 kb on + strand at 462.225 kb on + strand at 462.225 kb on + strand at 462.225 kb on + strand at 462.226 kb on - strand at 462.226 kb on - strand at 462.226 kb on - strand at 462.226 kb on - strand at 462.227 kb on + strand at 462.228 kb on - strand at 462.228 kb on - strand at 462.236 kb on - strand at 462.236 kb on - strand at 462.240 kb on + strand at 462.240 kb on + strand at 462.286 kb on - strand, within HMPREF1058_RS06510 at 462.286 kb on - strand, within HMPREF1058_RS06510 at 462.294 kb on + strand, within HMPREF1058_RS06510 at 462.295 kb on - strand, within HMPREF1058_RS06510 at 462.399 kb on + strand, within HMPREF1058_RS06510 at 462.400 kb on - strand, within HMPREF1058_RS06510 at 462.400 kb on - strand at 462.406 kb on + strand, within HMPREF1058_RS06510 at 462.411 kb on + strand, within HMPREF1058_RS06510 at 462.412 kb on - strand, within HMPREF1058_RS06510 at 462.452 kb on + strand, within HMPREF1058_RS06510 at 462.453 kb on - strand at 462.486 kb on + strand, within HMPREF1058_RS06510 at 462.487 kb on - strand, within HMPREF1058_RS06510 at 462.557 kb on - strand, within HMPREF1058_RS06510 at 462.572 kb on + strand, within HMPREF1058_RS06510 at 462.595 kb on + strand, within HMPREF1058_RS06510 at 462.671 kb on - strand, within HMPREF1058_RS06510 at 462.692 kb on - strand, within HMPREF1058_RS06510 at 462.693 kb on + strand, within HMPREF1058_RS06510 at 462.744 kb on + strand, within HMPREF1058_RS06510 at 462.784 kb on + strand, within HMPREF1058_RS06510 at 462.785 kb on - strand, within HMPREF1058_RS06510 at 462.826 kb on - strand, within HMPREF1058_RS06510 at 462.902 kb on + strand, within HMPREF1058_RS06510 at 462.952 kb on + strand, within HMPREF1058_RS06510 at 462.985 kb on - strand, within HMPREF1058_RS06510 at 462.985 kb on - strand, within HMPREF1058_RS06510 at 462.985 kb on - strand, within HMPREF1058_RS06510 at 463.031 kb on + strand, within HMPREF1058_RS06510 at 463.034 kb on - strand, within HMPREF1058_RS06510 at 463.038 kb on + strand, within HMPREF1058_RS06510 at 463.063 kb on - strand at 463.063 kb on - strand at 463.078 kb on - strand at 463.105 kb on + strand at 463.106 kb on - strand at 463.115 kb on - strand at 463.120 kb on - strand at 463.162 kb on + strand at 463.173 kb on + strand at 463.174 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Galactan from Potato 2.5 mg/ml (C) remove 459,381 + +0.8 459,381 + +0.4 459,382 - +0.8 459,429 + +0.3 459,680 + HMPREF1058_RS06520 0.31 -0.2 459,681 - HMPREF1058_RS06520 0.31 +0.1 459,750 + HMPREF1058_RS06520 0.38 -0.2 459,763 + HMPREF1058_RS06520 0.39 +2.6 459,768 - HMPREF1058_RS06520 0.40 +1.1 459,781 + HMPREF1058_RS06520 0.41 +0.4 459,782 - HMPREF1058_RS06520 0.41 +2.6 459,782 - HMPREF1058_RS06520 0.41 +2.4 459,783 + +1.8 459,783 + HMPREF1058_RS06520 0.41 +0.9 459,784 - HMPREF1058_RS06520 0.42 -0.5 459,802 - HMPREF1058_RS06520 0.43 +0.4 459,802 - HMPREF1058_RS06520 0.43 +1.1 459,819 + HMPREF1058_RS06520 0.45 -1.5 459,837 - HMPREF1058_RS06520 0.47 -0.4 459,863 - HMPREF1058_RS06520 0.50 -0.8 459,873 - HMPREF1058_RS06520 0.51 +1.4 459,873 - HMPREF1058_RS06520 0.51 +1.6 459,906 + HMPREF1058_RS06520 0.54 -1.2 459,907 - HMPREF1058_RS06520 0.54 +1.3 459,916 - HMPREF1058_RS06520 0.55 +1.8 460,005 - HMPREF1058_RS06520 0.65 +1.6 460,054 + HMPREF1058_RS06520 0.70 +1.2 460,263 - -0.2 460,263 - +2.0 460,288 - +0.4 460,319 + +1.4 460,335 - -1.1 460,370 - +1.2 460,371 + +0.4 460,373 + +0.2 460,439 + +0.5 460,439 + +1.2 460,464 - +0.3 460,472 + +2.9 460,479 - +1.4 460,523 + +0.9 460,525 + +0.5 460,525 + +1.0 460,531 + +2.2 460,560 + HMPREF1058_RS06515 0.10 -0.9 460,560 + HMPREF1058_RS06515 0.10 -1.2 460,560 + HMPREF1058_RS06515 0.10 +0.2 460,560 + HMPREF1058_RS06515 0.10 +1.8 460,562 + HMPREF1058_RS06515 0.10 +2.0 460,564 + HMPREF1058_RS06515 0.10 +1.2 460,565 - HMPREF1058_RS06515 0.11 +0.0 460,583 + HMPREF1058_RS06515 0.12 +0.0 460,595 - HMPREF1058_RS06515 0.12 -0.4 460,595 - HMPREF1058_RS06515 0.12 -0.8 460,601 + HMPREF1058_RS06515 0.13 -0.0 460,605 - HMPREF1058_RS06515 0.13 +0.1 460,617 + HMPREF1058_RS06515 0.13 +2.7 460,634 + HMPREF1058_RS06515 0.14 +0.4 460,638 + HMPREF1058_RS06515 0.15 -0.1 460,652 - HMPREF1058_RS06515 0.15 -0.1 460,652 - HMPREF1058_RS06515 0.15 +0.4 460,667 - HMPREF1058_RS06515 0.16 +1.8 460,793 + HMPREF1058_RS06515 0.23 -0.1 460,820 + HMPREF1058_RS06515 0.25 +2.0 460,820 + HMPREF1058_RS06515 0.25 +0.8 460,821 - HMPREF1058_RS06515 0.25 -0.8 460,826 - HMPREF1058_RS06515 0.25 -0.4 460,875 + HMPREF1058_RS06515 0.28 +2.3 460,875 + HMPREF1058_RS06515 0.28 +0.5 460,879 - +1.0 460,879 - HMPREF1058_RS06515 0.28 -0.7 460,880 + HMPREF1058_RS06515 0.28 +0.5 460,892 + HMPREF1058_RS06515 0.29 +0.3 460,896 + HMPREF1058_RS06515 0.29 +1.5 460,929 + HMPREF1058_RS06515 0.31 -0.3 460,929 + HMPREF1058_RS06515 0.31 +1.5 460,933 + HMPREF1058_RS06515 0.31 +1.0 460,970 + HMPREF1058_RS06515 0.33 +2.9 461,046 - HMPREF1058_RS06515 0.37 +0.3 461,058 + HMPREF1058_RS06515 0.38 +0.1 461,065 + HMPREF1058_RS06515 0.38 +1.2 461,097 - HMPREF1058_RS06515 0.40 +2.3 461,099 + HMPREF1058_RS06515 0.40 +0.8 461,101 + HMPREF1058_RS06515 0.40 +1.8 461,111 + HMPREF1058_RS06515 0.41 +0.7 461,112 - HMPREF1058_RS06515 0.41 +1.7 461,118 - HMPREF1058_RS06515 0.41 +0.2 461,120 - HMPREF1058_RS06515 0.41 +0.6 461,139 - HMPREF1058_RS06515 0.42 +1.9 461,188 - HMPREF1058_RS06515 0.45 +1.6 461,240 + HMPREF1058_RS06515 0.48 +0.0 461,329 - HMPREF1058_RS06515 0.53 +1.7 461,329 - HMPREF1058_RS06515 0.53 -1.3 461,407 + HMPREF1058_RS06515 0.57 +1.7 461,407 + HMPREF1058_RS06515 0.57 +1.0 461,408 - HMPREF1058_RS06515 0.57 +3.1 461,408 - HMPREF1058_RS06515 0.57 +0.5 461,408 - HMPREF1058_RS06515 0.57 +1.3 461,409 + HMPREF1058_RS06515 0.57 +1.7 461,415 - HMPREF1058_RS06515 0.57 +0.5 461,432 + HMPREF1058_RS06515 0.58 +1.0 461,433 - HMPREF1058_RS06515 0.58 +1.8 461,433 - HMPREF1058_RS06515 0.58 +1.9 461,624 - HMPREF1058_RS06515 0.69 +2.2 461,631 - HMPREF1058_RS06515 0.69 +1.5 461,667 - HMPREF1058_RS06515 0.71 +1.3 461,687 + HMPREF1058_RS06515 0.72 +1.2 461,705 + HMPREF1058_RS06515 0.73 +0.4 461,708 - HMPREF1058_RS06515 0.74 -1.0 461,708 - HMPREF1058_RS06515 0.74 +1.2 461,885 + HMPREF1058_RS06515 0.83 -0.6 461,902 - HMPREF1058_RS06515 0.84 +0.4 461,903 + HMPREF1058_RS06515 0.84 +0.4 461,963 + HMPREF1058_RS06515 0.88 +0.0 461,970 + HMPREF1058_RS06515 0.88 +2.0 462,000 + HMPREF1058_RS06515 0.90 -1.0 462,016 + +2.2 462,024 - -0.1 462,027 + -0.7 462,030 - -0.2 462,030 - +1.2 462,074 - +2.6 462,074 - +0.9 462,077 + +0.1 462,081 - +1.7 462,113 + +0.4 462,114 - +0.4 462,114 - -0.6 462,118 + +1.0 462,121 + +0.2 462,127 + +1.8 462,128 - +3.1 462,149 + +0.4 462,168 - +0.2 462,170 - +0.7 462,172 + +0.6 462,172 + +1.4 462,172 + +1.0 462,172 + +1.0 462,223 + +2.3 462,223 + +1.0 462,223 + -0.6 462,225 + +2.0 462,225 + +0.0 462,225 + -0.8 462,225 + +2.9 462,225 + +2.6 462,225 + +0.8 462,226 - +0.0 462,226 - -1.7 462,226 - +0.6 462,226 - -3.7 462,227 + +0.0 462,228 - +0.4 462,228 - +0.7 462,236 - -1.9 462,236 - +2.4 462,240 + +1.0 462,240 + +0.9 462,286 - HMPREF1058_RS06510 0.10 +1.3 462,286 - HMPREF1058_RS06510 0.10 +3.1 462,294 + HMPREF1058_RS06510 0.11 +0.7 462,295 - HMPREF1058_RS06510 0.11 +1.4 462,399 + HMPREF1058_RS06510 0.22 +3.6 462,400 - HMPREF1058_RS06510 0.22 +3.6 462,400 - -0.2 462,406 + HMPREF1058_RS06510 0.23 +0.9 462,411 + HMPREF1058_RS06510 0.23 +1.2 462,412 - HMPREF1058_RS06510 0.23 +2.2 462,452 + HMPREF1058_RS06510 0.27 +1.2 462,453 - -1.6 462,486 + HMPREF1058_RS06510 0.31 +1.8 462,487 - HMPREF1058_RS06510 0.31 -1.4 462,557 - HMPREF1058_RS06510 0.38 -1.7 462,572 + HMPREF1058_RS06510 0.40 +2.5 462,595 + HMPREF1058_RS06510 0.42 +2.6 462,671 - HMPREF1058_RS06510 0.50 +1.8 462,692 - HMPREF1058_RS06510 0.52 +1.7 462,693 + HMPREF1058_RS06510 0.52 +1.0 462,744 + HMPREF1058_RS06510 0.58 +0.6 462,784 + HMPREF1058_RS06510 0.62 +0.2 462,785 - HMPREF1058_RS06510 0.62 +2.6 462,826 - HMPREF1058_RS06510 0.66 -2.3 462,902 + HMPREF1058_RS06510 0.74 -0.2 462,952 + HMPREF1058_RS06510 0.79 +0.6 462,985 - HMPREF1058_RS06510 0.83 +0.1 462,985 - HMPREF1058_RS06510 0.83 +0.8 462,985 - HMPREF1058_RS06510 0.83 -0.4 463,031 + HMPREF1058_RS06510 0.88 -0.8 463,034 - HMPREF1058_RS06510 0.88 -0.4 463,038 + HMPREF1058_RS06510 0.88 -0.4 463,063 - +0.9 463,063 - +1.4 463,078 - +4.4 463,105 + +0.5 463,106 - +0.3 463,115 - +0.1 463,120 - +0.3 463,162 + +0.6 463,173 + -0.7 463,174 - +0.3
Or see this region's nucleotide sequence