Experiment: Galactan from Potato 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS06515 and HMPREF1058_RS06510 are separated by 2 nucleotides HMPREF1058_RS06510 and HMPREF1058_RS06505 are separated by 12 nucleotides HMPREF1058_RS06505 and HMPREF1058_RS06500 are separated by 47 nucleotides
HMPREF1058_RS06515: HMPREF1058_RS06515 - aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme, at 460,374 to 462,185
_RS06515
HMPREF1058_RS06510: HMPREF1058_RS06510 - ornithine cyclodeaminase, at 462,188 to 463,150
_RS06510
HMPREF1058_RS06505: HMPREF1058_RS06505 - LicD family protein, at 463,163 to 463,990
_RS06505
HMPREF1058_RS06500: HMPREF1058_RS06500 - acyltransferase, at 464,038 to 465,057
_RS06500
Position (kb) 462
463
464 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 461.188 kb on - strand, within HMPREF1058_RS06515 at 461.240 kb on + strand, within HMPREF1058_RS06515 at 461.329 kb on - strand, within HMPREF1058_RS06515 at 461.329 kb on - strand, within HMPREF1058_RS06515 at 461.407 kb on + strand, within HMPREF1058_RS06515 at 461.407 kb on + strand, within HMPREF1058_RS06515 at 461.408 kb on - strand, within HMPREF1058_RS06515 at 461.408 kb on - strand, within HMPREF1058_RS06515 at 461.408 kb on - strand, within HMPREF1058_RS06515 at 461.409 kb on + strand, within HMPREF1058_RS06515 at 461.415 kb on - strand, within HMPREF1058_RS06515 at 461.432 kb on + strand, within HMPREF1058_RS06515 at 461.433 kb on - strand, within HMPREF1058_RS06515 at 461.433 kb on - strand, within HMPREF1058_RS06515 at 461.624 kb on - strand, within HMPREF1058_RS06515 at 461.631 kb on - strand, within HMPREF1058_RS06515 at 461.667 kb on - strand, within HMPREF1058_RS06515 at 461.687 kb on + strand, within HMPREF1058_RS06515 at 461.705 kb on + strand, within HMPREF1058_RS06515 at 461.708 kb on - strand, within HMPREF1058_RS06515 at 461.708 kb on - strand, within HMPREF1058_RS06515 at 461.885 kb on + strand, within HMPREF1058_RS06515 at 461.902 kb on - strand, within HMPREF1058_RS06515 at 461.903 kb on + strand, within HMPREF1058_RS06515 at 461.963 kb on + strand, within HMPREF1058_RS06515 at 461.970 kb on + strand, within HMPREF1058_RS06515 at 462.000 kb on + strand, within HMPREF1058_RS06515 at 462.016 kb on + strand at 462.024 kb on - strand at 462.027 kb on + strand at 462.030 kb on - strand at 462.030 kb on - strand at 462.074 kb on - strand at 462.074 kb on - strand at 462.077 kb on + strand at 462.081 kb on - strand at 462.113 kb on + strand at 462.114 kb on - strand at 462.114 kb on - strand at 462.118 kb on + strand at 462.121 kb on + strand at 462.127 kb on + strand at 462.128 kb on - strand at 462.149 kb on + strand at 462.168 kb on - strand at 462.170 kb on - strand at 462.172 kb on + strand at 462.172 kb on + strand at 462.172 kb on + strand at 462.172 kb on + strand at 462.223 kb on + strand at 462.223 kb on + strand at 462.223 kb on + strand at 462.225 kb on + strand at 462.225 kb on + strand at 462.225 kb on + strand at 462.225 kb on + strand at 462.225 kb on + strand at 462.225 kb on + strand at 462.226 kb on - strand at 462.226 kb on - strand at 462.226 kb on - strand at 462.226 kb on - strand at 462.227 kb on + strand at 462.228 kb on - strand at 462.228 kb on - strand at 462.236 kb on - strand at 462.236 kb on - strand at 462.240 kb on + strand at 462.240 kb on + strand at 462.286 kb on - strand, within HMPREF1058_RS06510 at 462.286 kb on - strand, within HMPREF1058_RS06510 at 462.294 kb on + strand, within HMPREF1058_RS06510 at 462.295 kb on - strand, within HMPREF1058_RS06510 at 462.399 kb on + strand, within HMPREF1058_RS06510 at 462.400 kb on - strand, within HMPREF1058_RS06510 at 462.400 kb on - strand at 462.406 kb on + strand, within HMPREF1058_RS06510 at 462.411 kb on + strand, within HMPREF1058_RS06510 at 462.412 kb on - strand, within HMPREF1058_RS06510 at 462.452 kb on + strand, within HMPREF1058_RS06510 at 462.453 kb on - strand at 462.486 kb on + strand, within HMPREF1058_RS06510 at 462.487 kb on - strand, within HMPREF1058_RS06510 at 462.557 kb on - strand, within HMPREF1058_RS06510 at 462.572 kb on + strand, within HMPREF1058_RS06510 at 462.595 kb on + strand, within HMPREF1058_RS06510 at 462.671 kb on - strand, within HMPREF1058_RS06510 at 462.692 kb on - strand, within HMPREF1058_RS06510 at 462.693 kb on + strand, within HMPREF1058_RS06510 at 462.744 kb on + strand, within HMPREF1058_RS06510 at 462.784 kb on + strand, within HMPREF1058_RS06510 at 462.785 kb on - strand, within HMPREF1058_RS06510 at 462.826 kb on - strand, within HMPREF1058_RS06510 at 462.902 kb on + strand, within HMPREF1058_RS06510 at 462.952 kb on + strand, within HMPREF1058_RS06510 at 462.985 kb on - strand, within HMPREF1058_RS06510 at 462.985 kb on - strand, within HMPREF1058_RS06510 at 462.985 kb on - strand, within HMPREF1058_RS06510 at 463.031 kb on + strand, within HMPREF1058_RS06510 at 463.034 kb on - strand, within HMPREF1058_RS06510 at 463.038 kb on + strand, within HMPREF1058_RS06510 at 463.063 kb on - strand at 463.063 kb on - strand at 463.078 kb on - strand at 463.105 kb on + strand at 463.106 kb on - strand at 463.115 kb on - strand at 463.120 kb on - strand at 463.162 kb on + strand at 463.173 kb on + strand at 463.174 kb on - strand at 463.231 kb on - strand at 463.244 kb on - strand at 463.258 kb on - strand, within HMPREF1058_RS06505 at 463.258 kb on - strand, within HMPREF1058_RS06505 at 463.279 kb on - strand, within HMPREF1058_RS06505 at 463.327 kb on + strand, within HMPREF1058_RS06505 at 463.360 kb on - strand, within HMPREF1058_RS06505 at 463.457 kb on - strand, within HMPREF1058_RS06505 at 463.469 kb on - strand, within HMPREF1058_RS06505 at 463.522 kb on + strand, within HMPREF1058_RS06505 at 463.580 kb on + strand, within HMPREF1058_RS06505 at 463.580 kb on + strand, within HMPREF1058_RS06505 at 463.580 kb on + strand, within HMPREF1058_RS06505 at 463.581 kb on - strand, within HMPREF1058_RS06505 at 463.689 kb on - strand, within HMPREF1058_RS06505 at 463.691 kb on - strand, within HMPREF1058_RS06505 at 463.698 kb on + strand, within HMPREF1058_RS06505 at 463.742 kb on - strand, within HMPREF1058_RS06505 at 463.880 kb on - strand, within HMPREF1058_RS06505 at 463.897 kb on - strand, within HMPREF1058_RS06505 at 463.910 kb on + strand at 463.910 kb on + strand at 463.911 kb on - strand at 463.919 kb on + strand at 463.919 kb on + strand at 463.919 kb on + strand at 463.920 kb on - strand at 463.920 kb on - strand at 463.920 kb on - strand at 463.950 kb on + strand at 463.964 kb on + strand at 463.964 kb on + strand at 463.973 kb on + strand at 464.006 kb on - strand at 464.010 kb on - strand at 464.010 kb on - strand at 464.015 kb on + strand at 464.043 kb on + strand at 464.043 kb on + strand at 464.044 kb on - strand at 464.044 kb on - strand at 464.116 kb on - strand at 464.136 kb on - strand at 464.142 kb on + strand, within HMPREF1058_RS06500 at 464.142 kb on + strand, within HMPREF1058_RS06500 at 464.143 kb on - strand, within HMPREF1058_RS06500
Per-strain Table
Position Strand Gene LocusTag Fraction Galactan from Potato 2.5 mg/ml (C) remove 461,188 - HMPREF1058_RS06515 0.45 +1.6 461,240 + HMPREF1058_RS06515 0.48 +0.0 461,329 - HMPREF1058_RS06515 0.53 +1.7 461,329 - HMPREF1058_RS06515 0.53 -1.3 461,407 + HMPREF1058_RS06515 0.57 +1.7 461,407 + HMPREF1058_RS06515 0.57 +1.0 461,408 - HMPREF1058_RS06515 0.57 +3.1 461,408 - HMPREF1058_RS06515 0.57 +0.5 461,408 - HMPREF1058_RS06515 0.57 +1.3 461,409 + HMPREF1058_RS06515 0.57 +1.7 461,415 - HMPREF1058_RS06515 0.57 +0.5 461,432 + HMPREF1058_RS06515 0.58 +1.0 461,433 - HMPREF1058_RS06515 0.58 +1.8 461,433 - HMPREF1058_RS06515 0.58 +1.9 461,624 - HMPREF1058_RS06515 0.69 +2.2 461,631 - HMPREF1058_RS06515 0.69 +1.5 461,667 - HMPREF1058_RS06515 0.71 +1.3 461,687 + HMPREF1058_RS06515 0.72 +1.2 461,705 + HMPREF1058_RS06515 0.73 +0.4 461,708 - HMPREF1058_RS06515 0.74 -1.0 461,708 - HMPREF1058_RS06515 0.74 +1.2 461,885 + HMPREF1058_RS06515 0.83 -0.6 461,902 - HMPREF1058_RS06515 0.84 +0.4 461,903 + HMPREF1058_RS06515 0.84 +0.4 461,963 + HMPREF1058_RS06515 0.88 +0.0 461,970 + HMPREF1058_RS06515 0.88 +2.0 462,000 + HMPREF1058_RS06515 0.90 -1.0 462,016 + +2.2 462,024 - -0.1 462,027 + -0.7 462,030 - -0.2 462,030 - +1.2 462,074 - +2.6 462,074 - +0.9 462,077 + +0.1 462,081 - +1.7 462,113 + +0.4 462,114 - +0.4 462,114 - -0.6 462,118 + +1.0 462,121 + +0.2 462,127 + +1.8 462,128 - +3.1 462,149 + +0.4 462,168 - +0.2 462,170 - +0.7 462,172 + +0.6 462,172 + +1.4 462,172 + +1.0 462,172 + +1.0 462,223 + +2.3 462,223 + +1.0 462,223 + -0.6 462,225 + +2.0 462,225 + +0.0 462,225 + -0.8 462,225 + +2.9 462,225 + +2.6 462,225 + +0.8 462,226 - +0.0 462,226 - -1.7 462,226 - +0.6 462,226 - -3.7 462,227 + +0.0 462,228 - +0.4 462,228 - +0.7 462,236 - -1.9 462,236 - +2.4 462,240 + +1.0 462,240 + +0.9 462,286 - HMPREF1058_RS06510 0.10 +1.3 462,286 - HMPREF1058_RS06510 0.10 +3.1 462,294 + HMPREF1058_RS06510 0.11 +0.7 462,295 - HMPREF1058_RS06510 0.11 +1.4 462,399 + HMPREF1058_RS06510 0.22 +3.6 462,400 - HMPREF1058_RS06510 0.22 +3.6 462,400 - -0.2 462,406 + HMPREF1058_RS06510 0.23 +0.9 462,411 + HMPREF1058_RS06510 0.23 +1.2 462,412 - HMPREF1058_RS06510 0.23 +2.2 462,452 + HMPREF1058_RS06510 0.27 +1.2 462,453 - -1.6 462,486 + HMPREF1058_RS06510 0.31 +1.8 462,487 - HMPREF1058_RS06510 0.31 -1.4 462,557 - HMPREF1058_RS06510 0.38 -1.7 462,572 + HMPREF1058_RS06510 0.40 +2.5 462,595 + HMPREF1058_RS06510 0.42 +2.6 462,671 - HMPREF1058_RS06510 0.50 +1.8 462,692 - HMPREF1058_RS06510 0.52 +1.7 462,693 + HMPREF1058_RS06510 0.52 +1.0 462,744 + HMPREF1058_RS06510 0.58 +0.6 462,784 + HMPREF1058_RS06510 0.62 +0.2 462,785 - HMPREF1058_RS06510 0.62 +2.6 462,826 - HMPREF1058_RS06510 0.66 -2.3 462,902 + HMPREF1058_RS06510 0.74 -0.2 462,952 + HMPREF1058_RS06510 0.79 +0.6 462,985 - HMPREF1058_RS06510 0.83 +0.1 462,985 - HMPREF1058_RS06510 0.83 +0.8 462,985 - HMPREF1058_RS06510 0.83 -0.4 463,031 + HMPREF1058_RS06510 0.88 -0.8 463,034 - HMPREF1058_RS06510 0.88 -0.4 463,038 + HMPREF1058_RS06510 0.88 -0.4 463,063 - +0.9 463,063 - +1.4 463,078 - +4.4 463,105 + +0.5 463,106 - +0.3 463,115 - +0.1 463,120 - +0.3 463,162 + +0.6 463,173 + -0.7 463,174 - +0.3 463,231 - +0.2 463,244 - +1.1 463,258 - HMPREF1058_RS06505 0.11 +1.3 463,258 - HMPREF1058_RS06505 0.11 -0.7 463,279 - HMPREF1058_RS06505 0.14 -1.3 463,327 + HMPREF1058_RS06505 0.20 -1.3 463,360 - HMPREF1058_RS06505 0.24 +0.6 463,457 - HMPREF1058_RS06505 0.36 -0.4 463,469 - HMPREF1058_RS06505 0.37 -3.1 463,522 + HMPREF1058_RS06505 0.43 -0.5 463,580 + HMPREF1058_RS06505 0.50 -0.4 463,580 + HMPREF1058_RS06505 0.50 -1.2 463,580 + HMPREF1058_RS06505 0.50 -0.2 463,581 - HMPREF1058_RS06505 0.50 -0.8 463,689 - HMPREF1058_RS06505 0.64 +2.2 463,691 - HMPREF1058_RS06505 0.64 -0.3 463,698 + HMPREF1058_RS06505 0.65 +1.0 463,742 - HMPREF1058_RS06505 0.70 +1.4 463,880 - HMPREF1058_RS06505 0.87 +0.4 463,897 - HMPREF1058_RS06505 0.89 -1.6 463,910 + -0.0 463,910 + +0.7 463,911 - +1.5 463,919 + -0.1 463,919 + +0.4 463,919 + +0.7 463,920 - -0.6 463,920 - -0.6 463,920 - +0.6 463,950 + +0.2 463,964 + +0.3 463,964 + -1.8 463,973 + -0.8 464,006 - +1.5 464,010 - +2.4 464,010 - +0.0 464,015 + +2.3 464,043 + +1.3 464,043 + -0.2 464,044 - +1.4 464,044 - +0.1 464,116 - +2.4 464,136 - +0.8 464,142 + HMPREF1058_RS06500 0.10 +1.4 464,142 + HMPREF1058_RS06500 0.10 -0.8 464,143 - HMPREF1058_RS06500 0.10 +0.0
Or see this region's nucleotide sequence