Experiment: Galactan from Potato 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS06435 and HMPREF1058_RS06430 are separated by 43 nucleotides HMPREF1058_RS06430 and HMPREF1058_RS06425 are separated by 156 nucleotides HMPREF1058_RS06425 and HMPREF1058_RS06420 are separated by 154 nucleotides HMPREF1058_RS06420 and HMPREF1058_RS06415 are separated by 39 nucleotides
HMPREF1058_RS06435: HMPREF1058_RS06435 - D-2-hydroxyacid dehydrogenase, at 480,049 to 481,005
_RS06435
HMPREF1058_RS06430: HMPREF1058_RS06430 - C-GCAxxG-C-C family protein, at 481,049 to 481,552
_RS06430
HMPREF1058_RS06425: HMPREF1058_RS06425 - winged helix-turn-helix domain-containing protein, at 481,709 to 481,912
_RS06425
HMPREF1058_RS06420: HMPREF1058_RS06420 - type II toxin-antitoxin system HicA family toxin, at 482,067 to 482,255
_RS06420
HMPREF1058_RS06415: HMPREF1058_RS06415 - antitoxin HicB, at 482,295 to 482,687
_RS06415
Position (kb) 481
482 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 480.057 kb on - strand at 480.136 kb on + strand at 480.195 kb on + strand, within HMPREF1058_RS06435 at 480.250 kb on + strand, within HMPREF1058_RS06435 at 480.276 kb on + strand, within HMPREF1058_RS06435 at 480.277 kb on - strand, within HMPREF1058_RS06435 at 480.279 kb on + strand, within HMPREF1058_RS06435 at 480.329 kb on + strand, within HMPREF1058_RS06435 at 480.330 kb on - strand, within HMPREF1058_RS06435 at 480.338 kb on - strand, within HMPREF1058_RS06435 at 480.375 kb on + strand, within HMPREF1058_RS06435 at 480.377 kb on + strand, within HMPREF1058_RS06435 at 480.377 kb on + strand, within HMPREF1058_RS06435 at 480.406 kb on + strand, within HMPREF1058_RS06435 at 480.566 kb on + strand, within HMPREF1058_RS06435 at 480.566 kb on + strand, within HMPREF1058_RS06435 at 480.575 kb on - strand, within HMPREF1058_RS06435 at 480.576 kb on + strand, within HMPREF1058_RS06435 at 480.577 kb on - strand, within HMPREF1058_RS06435 at 480.720 kb on + strand, within HMPREF1058_RS06435 at 480.855 kb on + strand, within HMPREF1058_RS06435 at 480.855 kb on + strand, within HMPREF1058_RS06435 at 480.855 kb on + strand, within HMPREF1058_RS06435 at 480.856 kb on - strand, within HMPREF1058_RS06435 at 481.067 kb on - strand at 481.141 kb on + strand, within HMPREF1058_RS06430 at 481.141 kb on + strand, within HMPREF1058_RS06430 at 481.141 kb on + strand, within HMPREF1058_RS06430 at 481.141 kb on + strand, within HMPREF1058_RS06430 at 481.142 kb on - strand, within HMPREF1058_RS06430 at 481.142 kb on - strand, within HMPREF1058_RS06430 at 481.469 kb on + strand, within HMPREF1058_RS06430 at 481.472 kb on + strand, within HMPREF1058_RS06430 at 481.472 kb on + strand, within HMPREF1058_RS06430 at 481.575 kb on + strand at 481.626 kb on + strand at 481.861 kb on + strand, within HMPREF1058_RS06425 at 481.861 kb on + strand, within HMPREF1058_RS06425 at 481.911 kb on - strand at 481.987 kb on + strand at 481.999 kb on - strand at 482.074 kb on - strand at 482.122 kb on + strand, within HMPREF1058_RS06420 at 482.122 kb on + strand, within HMPREF1058_RS06420 at 482.220 kb on + strand, within HMPREF1058_RS06420 at 482.220 kb on + strand, within HMPREF1058_RS06420 at 482.220 kb on + strand, within HMPREF1058_RS06420 at 482.220 kb on + strand, within HMPREF1058_RS06420 at 482.221 kb on - strand, within HMPREF1058_RS06420 at 482.221 kb on - strand, within HMPREF1058_RS06420 at 482.519 kb on + strand, within HMPREF1058_RS06415
Per-strain Table
Position Strand Gene LocusTag Fraction Galactan from Potato 2.5 mg/ml (C) remove 480,057 - -0.8 480,136 + -1.8 480,195 + HMPREF1058_RS06435 0.15 +0.2 480,250 + HMPREF1058_RS06435 0.21 +0.0 480,276 + HMPREF1058_RS06435 0.24 -0.5 480,277 - HMPREF1058_RS06435 0.24 -0.8 480,279 + HMPREF1058_RS06435 0.24 +3.4 480,329 + HMPREF1058_RS06435 0.29 -0.5 480,330 - HMPREF1058_RS06435 0.29 -0.6 480,338 - HMPREF1058_RS06435 0.30 -0.6 480,375 + HMPREF1058_RS06435 0.34 +1.1 480,377 + HMPREF1058_RS06435 0.34 +0.5 480,377 + HMPREF1058_RS06435 0.34 +2.0 480,406 + HMPREF1058_RS06435 0.37 -0.7 480,566 + HMPREF1058_RS06435 0.54 +1.0 480,566 + HMPREF1058_RS06435 0.54 -0.9 480,575 - HMPREF1058_RS06435 0.55 -2.1 480,576 + HMPREF1058_RS06435 0.55 -0.7 480,577 - HMPREF1058_RS06435 0.55 +2.4 480,720 + HMPREF1058_RS06435 0.70 -0.5 480,855 + HMPREF1058_RS06435 0.84 -0.9 480,855 + HMPREF1058_RS06435 0.84 -1.2 480,855 + HMPREF1058_RS06435 0.84 +0.1 480,856 - HMPREF1058_RS06435 0.84 -3.3 481,067 - -1.0 481,141 + HMPREF1058_RS06430 0.18 +1.4 481,141 + HMPREF1058_RS06430 0.18 +1.2 481,141 + HMPREF1058_RS06430 0.18 +2.6 481,141 + HMPREF1058_RS06430 0.18 -1.2 481,142 - HMPREF1058_RS06430 0.18 -0.2 481,142 - HMPREF1058_RS06430 0.18 -1.7 481,469 + HMPREF1058_RS06430 0.83 -1.1 481,472 + HMPREF1058_RS06430 0.84 +1.6 481,472 + HMPREF1058_RS06430 0.84 -1.2 481,575 + +0.1 481,626 + -0.5 481,861 + HMPREF1058_RS06425 0.75 -0.0 481,861 + HMPREF1058_RS06425 0.75 -0.2 481,911 - +1.6 481,987 + +0.4 481,999 - -0.2 482,074 - -1.8 482,122 + HMPREF1058_RS06420 0.29 +1.3 482,122 + HMPREF1058_RS06420 0.29 -0.1 482,220 + HMPREF1058_RS06420 0.81 +0.6 482,220 + HMPREF1058_RS06420 0.81 +1.3 482,220 + HMPREF1058_RS06420 0.81 -0.3 482,220 + HMPREF1058_RS06420 0.81 +1.2 482,221 - HMPREF1058_RS06420 0.81 -0.5 482,221 - HMPREF1058_RS06420 0.81 +0.0 482,519 + HMPREF1058_RS06415 0.57 +1.6
Or see this region's nucleotide sequence