Experiment: Galactan from Potato 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS06260 and HMPREF1058_RS06255 are separated by 38 nucleotides HMPREF1058_RS06255 and HMPREF1058_RS06250 are separated by 253 nucleotides
HMPREF1058_RS06260: HMPREF1058_RS06260 - DUF3943 domain-containing protein, at 522,458 to 523,930
_RS06260
HMPREF1058_RS06255: HMPREF1058_RS06255 - hypothetical protein, at 523,969 to 525,354
_RS06255
HMPREF1058_RS06250: HMPREF1058_RS06250 - AMP-binding protein, at 525,608 to 527,266
_RS06250
Position (kb) 523
524
525
526 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 523.094 kb on - strand, within HMPREF1058_RS06260 at 523.188 kb on - strand, within HMPREF1058_RS06260 at 523.230 kb on + strand, within HMPREF1058_RS06260 at 523.433 kb on + strand, within HMPREF1058_RS06260 at 523.447 kb on + strand, within HMPREF1058_RS06260 at 523.447 kb on + strand, within HMPREF1058_RS06260 at 523.533 kb on - strand, within HMPREF1058_RS06260 at 523.550 kb on - strand, within HMPREF1058_RS06260 at 523.563 kb on + strand, within HMPREF1058_RS06260 at 523.585 kb on + strand, within HMPREF1058_RS06260 at 523.739 kb on + strand, within HMPREF1058_RS06260 at 523.838 kb on - strand at 523.840 kb on - strand at 523.890 kb on - strand at 523.922 kb on + strand at 523.942 kb on + strand at 523.947 kb on + strand at 524.026 kb on - strand at 524.121 kb on - strand, within HMPREF1058_RS06255 at 524.121 kb on - strand, within HMPREF1058_RS06255 at 524.164 kb on + strand, within HMPREF1058_RS06255 at 524.179 kb on + strand, within HMPREF1058_RS06255 at 524.180 kb on - strand, within HMPREF1058_RS06255 at 524.191 kb on + strand, within HMPREF1058_RS06255 at 524.298 kb on + strand, within HMPREF1058_RS06255 at 524.317 kb on - strand, within HMPREF1058_RS06255 at 524.391 kb on + strand, within HMPREF1058_RS06255 at 524.392 kb on - strand, within HMPREF1058_RS06255 at 524.506 kb on + strand, within HMPREF1058_RS06255 at 524.506 kb on + strand, within HMPREF1058_RS06255 at 524.507 kb on - strand, within HMPREF1058_RS06255 at 524.507 kb on - strand, within HMPREF1058_RS06255 at 524.520 kb on - strand, within HMPREF1058_RS06255 at 524.698 kb on + strand, within HMPREF1058_RS06255 at 524.705 kb on - strand, within HMPREF1058_RS06255 at 524.800 kb on + strand, within HMPREF1058_RS06255 at 524.800 kb on + strand, within HMPREF1058_RS06255 at 524.801 kb on - strand, within HMPREF1058_RS06255 at 524.932 kb on + strand, within HMPREF1058_RS06255 at 525.133 kb on + strand, within HMPREF1058_RS06255 at 525.134 kb on - strand, within HMPREF1058_RS06255 at 525.180 kb on + strand, within HMPREF1058_RS06255 at 525.404 kb on - strand at 525.405 kb on + strand at 525.416 kb on + strand at 525.461 kb on - strand at 525.461 kb on - strand at 525.497 kb on + strand at 525.498 kb on - strand at 525.498 kb on - strand at 525.498 kb on - strand at 525.509 kb on + strand at 525.510 kb on - strand at 525.510 kb on - strand at 525.518 kb on + strand at 525.527 kb on + strand at 525.563 kb on + strand at 525.565 kb on + strand at 525.565 kb on + strand at 525.570 kb on + strand at 525.571 kb on - strand at 525.573 kb on - strand at 525.573 kb on - strand at 525.574 kb on + strand at 525.575 kb on - strand at 525.575 kb on - strand at 525.626 kb on + strand at 525.626 kb on + strand at 525.627 kb on - strand at 525.839 kb on + strand, within HMPREF1058_RS06250 at 525.840 kb on - strand, within HMPREF1058_RS06250 at 525.872 kb on - strand, within HMPREF1058_RS06250 at 525.905 kb on - strand, within HMPREF1058_RS06250 at 526.016 kb on + strand, within HMPREF1058_RS06250 at 526.050 kb on + strand, within HMPREF1058_RS06250 at 526.062 kb on - strand, within HMPREF1058_RS06250 at 526.066 kb on + strand, within HMPREF1058_RS06250 at 526.080 kb on - strand, within HMPREF1058_RS06250 at 526.080 kb on - strand, within HMPREF1058_RS06250 at 526.083 kb on - strand, within HMPREF1058_RS06250 at 526.091 kb on + strand, within HMPREF1058_RS06250 at 526.092 kb on - strand, within HMPREF1058_RS06250 at 526.095 kb on - strand, within HMPREF1058_RS06250 at 526.095 kb on - strand, within HMPREF1058_RS06250 at 526.096 kb on + strand, within HMPREF1058_RS06250 at 526.244 kb on - strand, within HMPREF1058_RS06250 at 526.262 kb on + strand, within HMPREF1058_RS06250 at 526.290 kb on - strand, within HMPREF1058_RS06250
Per-strain Table
Position Strand Gene LocusTag Fraction Galactan from Potato 2.5 mg/ml (C) remove 523,094 - HMPREF1058_RS06260 0.43 +2.4 523,188 - HMPREF1058_RS06260 0.50 +2.4 523,230 + HMPREF1058_RS06260 0.52 +0.9 523,433 + HMPREF1058_RS06260 0.66 +2.4 523,447 + HMPREF1058_RS06260 0.67 +2.2 523,447 + HMPREF1058_RS06260 0.67 +2.6 523,533 - HMPREF1058_RS06260 0.73 +3.3 523,550 - HMPREF1058_RS06260 0.74 +1.6 523,563 + HMPREF1058_RS06260 0.75 +1.0 523,585 + HMPREF1058_RS06260 0.77 +2.9 523,739 + HMPREF1058_RS06260 0.87 +1.1 523,838 - +3.9 523,840 - +2.4 523,890 - +1.8 523,922 + +1.1 523,942 + +0.4 523,947 + +2.3 524,026 - +1.0 524,121 - HMPREF1058_RS06255 0.11 +1.6 524,121 - HMPREF1058_RS06255 0.11 +0.7 524,164 + HMPREF1058_RS06255 0.14 +1.2 524,179 + HMPREF1058_RS06255 0.15 +1.4 524,180 - HMPREF1058_RS06255 0.15 +2.7 524,191 + HMPREF1058_RS06255 0.16 +1.9 524,298 + HMPREF1058_RS06255 0.24 +1.6 524,317 - HMPREF1058_RS06255 0.25 +1.9 524,391 + HMPREF1058_RS06255 0.30 +1.7 524,392 - HMPREF1058_RS06255 0.31 +2.0 524,506 + HMPREF1058_RS06255 0.39 +1.4 524,506 + HMPREF1058_RS06255 0.39 +2.5 524,507 - HMPREF1058_RS06255 0.39 +2.2 524,507 - HMPREF1058_RS06255 0.39 +3.5 524,520 - HMPREF1058_RS06255 0.40 +1.9 524,698 + HMPREF1058_RS06255 0.53 +3.3 524,705 - HMPREF1058_RS06255 0.53 +3.4 524,800 + HMPREF1058_RS06255 0.60 +1.8 524,800 + HMPREF1058_RS06255 0.60 +2.7 524,801 - HMPREF1058_RS06255 0.60 +3.5 524,932 + HMPREF1058_RS06255 0.69 +3.2 525,133 + HMPREF1058_RS06255 0.84 +5.0 525,134 - HMPREF1058_RS06255 0.84 +1.3 525,180 + HMPREF1058_RS06255 0.87 -0.0 525,404 - +2.5 525,405 + +2.4 525,416 + +0.5 525,461 - +0.7 525,461 - +0.6 525,497 + +1.1 525,498 - -1.0 525,498 - +0.2 525,498 - -0.8 525,509 + +0.3 525,510 - -1.1 525,510 - +0.2 525,518 + +0.8 525,527 + -0.6 525,563 + -1.3 525,565 + -0.2 525,565 + +0.2 525,570 + +0.1 525,571 - -0.4 525,573 - -0.1 525,573 - +0.0 525,574 + +1.9 525,575 - -1.4 525,575 - +1.2 525,626 + +0.4 525,626 + -0.7 525,627 - +1.5 525,839 + HMPREF1058_RS06250 0.14 +0.9 525,840 - HMPREF1058_RS06250 0.14 +1.2 525,872 - HMPREF1058_RS06250 0.16 +1.0 525,905 - HMPREF1058_RS06250 0.18 -0.3 526,016 + HMPREF1058_RS06250 0.25 -0.6 526,050 + HMPREF1058_RS06250 0.27 -1.0 526,062 - HMPREF1058_RS06250 0.27 +0.9 526,066 + HMPREF1058_RS06250 0.28 -1.1 526,080 - HMPREF1058_RS06250 0.28 +0.8 526,080 - HMPREF1058_RS06250 0.28 -0.2 526,083 - HMPREF1058_RS06250 0.29 +0.4 526,091 + HMPREF1058_RS06250 0.29 -0.9 526,092 - HMPREF1058_RS06250 0.29 -2.0 526,095 - HMPREF1058_RS06250 0.29 +1.9 526,095 - HMPREF1058_RS06250 0.29 -0.5 526,096 + HMPREF1058_RS06250 0.29 -0.7 526,244 - HMPREF1058_RS06250 0.38 -0.2 526,262 + HMPREF1058_RS06250 0.39 -1.8 526,290 - HMPREF1058_RS06250 0.41 -0.5
Or see this region's nucleotide sequence