Experiment: Galactan from Potato 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS06245 and HMPREF1058_RS06240 are separated by 13 nucleotides HMPREF1058_RS06240 and HMPREF1058_RS06235 are separated by 33 nucleotides HMPREF1058_RS06235 and HMPREF1058_RS06230 are separated by 95 nucleotides
HMPREF1058_RS06245: HMPREF1058_RS06245 - dihydroorotate dehydrogenase-like protein, at 527,443 to 528,417
_RS06245
HMPREF1058_RS06240: HMPREF1058_RS06240 - YggS family pyridoxal phosphate-dependent enzyme, at 528,431 to 529,099
_RS06240
HMPREF1058_RS06235: HMPREF1058_RS06235 - DUF4494 domain-containing protein, at 529,133 to 529,615
_RS06235
HMPREF1058_RS06230: HMPREF1058_RS06230 - fucose isomerase, at 529,711 to 530,946
_RS06230
Position (kb) 528
529
530 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 527.479 kb on - strand at 527.479 kb on - strand at 527.589 kb on + strand, within HMPREF1058_RS06245 at 527.589 kb on + strand, within HMPREF1058_RS06245 at 527.590 kb on - strand, within HMPREF1058_RS06245 at 527.802 kb on - strand, within HMPREF1058_RS06245 at 527.802 kb on - strand, within HMPREF1058_RS06245 at 527.835 kb on - strand, within HMPREF1058_RS06245 at 527.965 kb on + strand, within HMPREF1058_RS06245 at 528.000 kb on - strand, within HMPREF1058_RS06245 at 528.168 kb on + strand, within HMPREF1058_RS06245 at 528.169 kb on - strand, within HMPREF1058_RS06245 at 528.193 kb on + strand, within HMPREF1058_RS06245 at 528.194 kb on - strand, within HMPREF1058_RS06245 at 528.194 kb on - strand, within HMPREF1058_RS06245 at 528.197 kb on + strand, within HMPREF1058_RS06245 at 528.197 kb on + strand at 528.197 kb on + strand, within HMPREF1058_RS06245 at 528.197 kb on + strand, within HMPREF1058_RS06245 at 528.197 kb on + strand, within HMPREF1058_RS06245 at 528.198 kb on - strand, within HMPREF1058_RS06245 at 528.198 kb on - strand, within HMPREF1058_RS06245 at 528.198 kb on - strand, within HMPREF1058_RS06245 at 528.198 kb on - strand, within HMPREF1058_RS06245 at 528.198 kb on - strand, within HMPREF1058_RS06245 at 528.198 kb on - strand, within HMPREF1058_RS06245 at 528.209 kb on + strand, within HMPREF1058_RS06245 at 528.233 kb on + strand, within HMPREF1058_RS06245 at 528.234 kb on - strand, within HMPREF1058_RS06245 at 528.237 kb on + strand, within HMPREF1058_RS06245 at 528.406 kb on + strand at 528.417 kb on + strand at 528.419 kb on + strand at 528.424 kb on - strand at 528.427 kb on - strand at 528.435 kb on + strand at 528.478 kb on + strand at 528.517 kb on + strand, within HMPREF1058_RS06240 at 528.591 kb on - strand, within HMPREF1058_RS06240 at 528.758 kb on + strand, within HMPREF1058_RS06240 at 528.759 kb on - strand, within HMPREF1058_RS06240 at 528.759 kb on - strand, within HMPREF1058_RS06240 at 528.827 kb on - strand, within HMPREF1058_RS06240 at 528.845 kb on + strand, within HMPREF1058_RS06240 at 528.845 kb on + strand, within HMPREF1058_RS06240 at 528.845 kb on + strand, within HMPREF1058_RS06240 at 528.846 kb on - strand, within HMPREF1058_RS06240 at 528.851 kb on - strand, within HMPREF1058_RS06240 at 528.851 kb on - strand, within HMPREF1058_RS06240 at 528.858 kb on + strand, within HMPREF1058_RS06240 at 528.859 kb on - strand, within HMPREF1058_RS06240 at 528.870 kb on + strand, within HMPREF1058_RS06240 at 528.871 kb on - strand, within HMPREF1058_RS06240 at 528.993 kb on + strand, within HMPREF1058_RS06240 at 528.993 kb on + strand, within HMPREF1058_RS06240 at 528.993 kb on + strand, within HMPREF1058_RS06240 at 528.993 kb on + strand, within HMPREF1058_RS06240 at 528.994 kb on - strand, within HMPREF1058_RS06240 at 528.994 kb on - strand, within HMPREF1058_RS06240 at 528.994 kb on - strand, within HMPREF1058_RS06240 at 529.109 kb on + strand at 529.587 kb on - strand at 529.607 kb on - strand at 529.666 kb on - strand at 529.689 kb on - strand at 529.778 kb on - strand at 529.780 kb on + strand at 529.780 kb on + strand at 529.812 kb on + strand at 529.812 kb on + strand at 529.818 kb on - strand at 529.818 kb on - strand at 529.976 kb on - strand, within HMPREF1058_RS06230 at 530.046 kb on + strand, within HMPREF1058_RS06230
Per-strain Table
Position Strand Gene LocusTag Fraction Galactan from Potato 2.5 mg/ml (C) remove 527,479 - +0.1 527,479 - -0.3 527,589 + HMPREF1058_RS06245 0.15 -1.0 527,589 + HMPREF1058_RS06245 0.15 -0.7 527,590 - HMPREF1058_RS06245 0.15 +1.1 527,802 - HMPREF1058_RS06245 0.37 -0.4 527,802 - HMPREF1058_RS06245 0.37 +1.9 527,835 - HMPREF1058_RS06245 0.40 -0.3 527,965 + HMPREF1058_RS06245 0.54 -1.5 528,000 - HMPREF1058_RS06245 0.57 +0.4 528,168 + HMPREF1058_RS06245 0.74 -0.8 528,169 - HMPREF1058_RS06245 0.74 -0.4 528,193 + HMPREF1058_RS06245 0.77 -0.7 528,194 - HMPREF1058_RS06245 0.77 -1.3 528,194 - HMPREF1058_RS06245 0.77 -0.1 528,197 + HMPREF1058_RS06245 0.77 -1.6 528,197 + +1.6 528,197 + HMPREF1058_RS06245 0.77 +1.6 528,197 + HMPREF1058_RS06245 0.77 -1.8 528,197 + HMPREF1058_RS06245 0.77 -0.2 528,198 - HMPREF1058_RS06245 0.77 +1.2 528,198 - HMPREF1058_RS06245 0.77 +2.2 528,198 - HMPREF1058_RS06245 0.77 +1.0 528,198 - HMPREF1058_RS06245 0.77 +0.4 528,198 - HMPREF1058_RS06245 0.77 -0.1 528,198 - HMPREF1058_RS06245 0.77 +0.4 528,209 + HMPREF1058_RS06245 0.79 -1.4 528,233 + HMPREF1058_RS06245 0.81 -0.3 528,234 - HMPREF1058_RS06245 0.81 +0.2 528,237 + HMPREF1058_RS06245 0.81 -2.3 528,406 + +0.0 528,417 + -1.1 528,419 + -1.2 528,424 - +0.2 528,427 - -0.6 528,435 + -1.2 528,478 + +1.0 528,517 + HMPREF1058_RS06240 0.13 +1.8 528,591 - HMPREF1058_RS06240 0.24 +1.1 528,758 + HMPREF1058_RS06240 0.49 +1.3 528,759 - HMPREF1058_RS06240 0.49 +1.4 528,759 - HMPREF1058_RS06240 0.49 -0.8 528,827 - HMPREF1058_RS06240 0.59 +1.5 528,845 + HMPREF1058_RS06240 0.62 -0.8 528,845 + HMPREF1058_RS06240 0.62 +0.6 528,845 + HMPREF1058_RS06240 0.62 +1.3 528,846 - HMPREF1058_RS06240 0.62 +0.2 528,851 - HMPREF1058_RS06240 0.63 -2.5 528,851 - HMPREF1058_RS06240 0.63 +0.5 528,858 + HMPREF1058_RS06240 0.64 -1.5 528,859 - HMPREF1058_RS06240 0.64 -3.4 528,870 + HMPREF1058_RS06240 0.66 +0.8 528,871 - HMPREF1058_RS06240 0.66 +0.8 528,993 + HMPREF1058_RS06240 0.84 +1.9 528,993 + HMPREF1058_RS06240 0.84 +0.0 528,993 + HMPREF1058_RS06240 0.84 +1.6 528,993 + HMPREF1058_RS06240 0.84 +0.6 528,994 - HMPREF1058_RS06240 0.84 -0.0 528,994 - HMPREF1058_RS06240 0.84 +0.8 528,994 - HMPREF1058_RS06240 0.84 -0.1 529,109 + -0.2 529,587 - -1.1 529,607 - -1.4 529,666 - +0.0 529,689 - -0.2 529,778 - -1.2 529,780 + +1.9 529,780 + -0.6 529,812 + -1.5 529,812 + -2.0 529,818 - -1.1 529,818 - -1.9 529,976 - HMPREF1058_RS06230 0.21 +0.0 530,046 + HMPREF1058_RS06230 0.27 -1.5
Or see this region's nucleotide sequence